RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 PLCH2O75038 1416 aa18.94■□□□□ 0.62
TPM1-209ENST00000558072 MYOM3Q5VTT5 1437 aa18.94■□□□□ 0.62
TPM1-209ENST00000558072 TRIM26Q12899 539 aaPredicted RBP18.93■□□□□ 0.62
TPM1-209ENST00000558072 FANCAO15360 1455 aa18.92■□□□□ 0.62
TPM1-209ENST00000558072 ZNF644Q9H582 1327 aaPredicted RBP18.92■□□□□ 0.62
TPM1-209ENST00000558072 MIA2Q96PC5 1412 aa18.91■□□□□ 0.62
TPM1-209ENST00000558072 ZNF777Q9ULD5 760 aaPredicted RBP18.91■□□□□ 0.62
TPM1-209ENST00000558072 PTPN23Q9H3S7 1636 aa18.9■□□□□ 0.62
TPM1-209ENST00000558072 CAMSAP2Q08AD1 1489 aa18.9■□□□□ 0.62
TPM1-209ENST00000558072 FGD6Q6ZV73 1430 aa18.89■□□□□ 0.61
TPM1-209ENST00000558072 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.88■□□□□ 0.61
TPM1-209ENST00000558072 ABCC1P33527 1531 aa18.88■□□□□ 0.61
TPM1-209ENST00000558072 ARAP3Q8WWN8 1544 aa18.88■□□□□ 0.61
TPM1-209ENST00000558072 SYCP2Q9BX26 1530 aa18.88■□□□□ 0.61
TPM1-209ENST00000558072 CFAP74Q9C0B2 1584 aa18.87■□□□□ 0.61
TPM1-209ENST00000558072 ARHGEF12Q9NZN5 1544 aa18.87■□□□□ 0.61
TPM1-209ENST00000558072 CFDP1Q9UEE9 299 aaPredicted RBP18.87■□□□□ 0.61
TPM1-209ENST00000558072 RRBP1Q9P2E9 1410 aaKnown RBP18.86■□□□□ 0.61
TPM1-209ENST00000558072 TEX14Q8IWB6 1497 aa18.84■□□□□ 0.61
TPM1-209ENST00000558072 COL17A1Q9UMD9 1497 aaPredicted RBP18.84■□□□□ 0.61
TPM1-209ENST00000558072 AKNAQ7Z591 1439 aa18.84■□□□□ 0.61
TPM1-209ENST00000558072 FRMPD1Q5SYB0 1578 aa18.84■□□□□ 0.61
TPM1-209ENST00000558072 ADGRL1O94910 1474 aa18.84■□□□□ 0.61
TPM1-209ENST00000558072 EFCAB2Q5VUJ9 269 aa18.83■□□□□ 0.6
TPM1-209ENST00000558072 NEO1Q92859 1461 aa18.83■□□□□ 0.6
TPM1-209ENST00000558072 TCOF1Q13428 1488 aaKnown RBP18.81■□□□□ 0.6
TPM1-209ENST00000558072 PLEKHH2Q8IVE3 1493 aa18.8■□□□□ 0.6
TPM1-209ENST00000558072 RSPH4AQ5TD94 716 aa18.8■□□□□ 0.6
TPM1-209ENST00000558072 KDM6BO15054 1643 aa18.8■□□□□ 0.6
TPM1-209ENST00000558072 SCAPERQ9BY12 1400 aa18.8■□□□□ 0.6
TPM1-209ENST00000558072 TRAPPC8Q9Y2L5 1435 aa18.8■□□□□ 0.6
TPM1-209ENST00000558072 RICTORQ6R327 1708 aa18.8■□□□□ 0.6
TPM1-209ENST00000558072 HNRNPMP52272 730 aaKnown RBP eCLIP18.79■□□□□ 0.6
TPM1-209ENST00000558072 FAM50AQ14320 339 aaKnown RBP18.79■□□□□ 0.6
TPM1-209ENST00000558072 CROCC2H7BZ55 1655 aa18.77■□□□□ 0.6
TPM1-209ENST00000558072 RAPGEF3O95398 923 aa18.76■□□□□ 0.59
TPM1-209ENST00000558072 MBD5Q9P267 1494 aa18.76■□□□□ 0.59
TPM1-209ENST00000558072 POGZQ7Z3K3 1410 aa18.75■□□□□ 0.59
TPM1-209ENST00000558072 DNMT1P26358 1616 aaKnown RBP18.75■□□□□ 0.59
TPM1-209ENST00000558072 DENND4BO75064 1496 aaPredicted RBP18.74■□□□□ 0.59
TPM1-209ENST00000558072 ITGAEP38570 1179 aa18.73■□□□□ 0.59
TPM1-209ENST00000558072 KIAA1107Q9UPP5 1409 aa18.73■□□□□ 0.59
TPM1-209ENST00000558072 ARHGEF5Q12774 1597 aa18.72■□□□□ 0.59
TPM1-209ENST00000558072 AFAP1Q8N556 730 aa18.71■□□□□ 0.59
TPM1-209ENST00000558072 ABCC5O15440 1437 aa18.71■□□□□ 0.59
TPM1-209ENST00000558072 DAPK1P53355 1430 aa18.71■□□□□ 0.59
TPM1-209ENST00000558072 PTPRKQ15262 1439 aa18.71■□□□□ 0.59
TPM1-209ENST00000558072 CCDC141Q6ZP82 1450 aa18.71■□□□□ 0.59
TPM1-209ENST00000558072 KDM5CP41229 1560 aa18.7■□□□□ 0.58
TPM1-209ENST00000558072 INO80Q9ULG1 1556 aaPredicted RBP18.68■□□□□ 0.58
TPM1-209ENST00000558072 ZFYVE16Q7Z3T8 1539 aa18.68■□□□□ 0.58
TPM1-209ENST00000558072 HECW2Q9P2P5 1572 aa18.68■□□□□ 0.58
TPM1-209ENST00000558072 ABCA6Q8N139 1617 aa18.67■□□□□ 0.58
TPM1-209ENST00000558072 ZNF518AQ6AHZ1 1483 aa18.67■□□□□ 0.58
TPM1-209ENST00000558072 TSPY4P0CV99 314 aa18.67■□□□□ 0.58
TPM1-209ENST00000558072 TSPY10P0CW01 314 aa18.67■□□□□ 0.58
TPM1-209ENST00000558072 KIDINS220Q9ULH0 1771 aa18.67■□□□□ 0.58
TPM1-209ENST00000558072 YEATS2Q9ULM3 1422 aa18.66■□□□□ 0.58
TPM1-209ENST00000558072 ZMYM4Q5VZL5 1548 aa18.66■□□□□ 0.58
TPM1-209ENST00000558072 PCGF6Q9BYE7 350 aa18.66■□□□□ 0.58
TPM1-209ENST00000558072 CHIC2Q9UKJ5 165 aa18.66■□□□□ 0.58
TPM1-209ENST00000558072 ATP7AQ04656 1500 aa18.65■□□□□ 0.58
TPM1-209ENST00000558072 ADGBQ8N7X0 1667 aa18.64■□□□□ 0.57
TPM1-209ENST00000558072 SIGLEC1Q9BZZ2 1709 aa18.64■□□□□ 0.57
TPM1-209ENST00000558072 ACIN1Q9UKV3 1341 aaKnown RBP18.64■□□□□ 0.57
TPM1-209ENST00000558072 C9orf84Q5VXU9 1444 aa18.64■□□□□ 0.57
TPM1-209ENST00000558072 DIP2CQ9Y2E4 1556 aa18.63■□□□□ 0.57
TPM1-209ENST00000558072 MAST1Q9Y2H9 1570 aa18.63■□□□□ 0.57
TPM1-209ENST00000558072 ARHGEF40Q8TER5 1519 aa18.62■□□□□ 0.57
TPM1-209ENST00000558072 SHANK2Q9UPX8 1470 aa18.6■□□□□ 0.57
TPM1-209ENST00000558072 SPAG9O60271 1321 aaKnown RBP18.6■□□□□ 0.57
TPM1-209ENST00000558072 MYT1LQ9UL68 1186 aa18.6■□□□□ 0.57
TPM1-209ENST00000558072 ROCK1Q13464 1354 aa18.58■□□□□ 0.57
TPM1-209ENST00000558072 PLXNC1O60486 1568 aa18.57■□□□□ 0.56
TPM1-209ENST00000558072 MLH3Q9UHC1 1453 aa18.57■□□□□ 0.56
TPM1-209ENST00000558072 ANKRD30AQ9BXX3 1397 aa18.56■□□□□ 0.56
TPM1-209ENST00000558072 RRP7BPQ9NSQ0 103 aa18.56■□□□□ 0.56
TPM1-209ENST00000558072 RTEL1-TNFRSF6BF6WH68 1400 aa18.55■□□□□ 0.56
TPM1-209ENST00000558072 ADGRL2O95490 1459 aa18.54■□□□□ 0.56
TPM1-209ENST00000558072 HRCP23327 699 aa18.52■□□□□ 0.56
TPM1-209ENST00000558072 GCC2Q8IWJ2 1684 aa18.52■□□□□ 0.56
TPM1-209ENST00000558072 KIF15Q9NS87 1388 aa18.51■□□□□ 0.55
TPM1-209ENST00000558072 NCOA1Q15788 1441 aa18.5■□□□□ 0.55
TPM1-209ENST00000558072 HFM1A2PYH4 1435 aa18.49■□□□□ 0.55
TPM1-209ENST00000558072 MAGI2Q86UL8 1455 aa18.49■□□□□ 0.55
TPM1-209ENST00000558072 A2MP01023 1474 aa18.48■□□□□ 0.55
TPM1-209ENST00000558072 SETD5Q9C0A6 1442 aa18.48■□□□□ 0.55
TPM1-209ENST00000558072 ATP10AO60312 1499 aa18.47■□□□□ 0.55
TPM1-209ENST00000558072 NAIPQ13075 1403 aa18.46■□□□□ 0.55
TPM1-209ENST00000558072 DUOX2Q9NRD8 1548 aa18.45■□□□□ 0.54
TPM1-209ENST00000558072 REREQ9P2R6 1566 aa18.42■□□□□ 0.54
TPM1-209ENST00000558072 MROH1Q8NDA8 1641 aa18.41■□□□□ 0.54
TPM1-209ENST00000558072 DHX29Q7Z478 1369 aaKnown RBP18.41■□□□□ 0.54
TPM1-209ENST00000558072 ANKRD50Q9ULJ7 1429 aa18.4■□□□□ 0.54
TPM1-209ENST00000558072 EIF2AK4Q9P2K8 1649 aaKnown RBP18.39■□□□□ 0.53
TPM1-209ENST00000558072 MLECQ14165 292 aa18.39■□□□□ 0.53
TPM1-209ENST00000558072 ERBINQ96RT1 1412 aa18.38■□□□□ 0.53
TPM1-209ENST00000558072 ARID4BQ4LE39 1312 aaPredicted RBP18.37■□□□□ 0.53
TPM1-209ENST00000558072 RAB3GAP2Q9H2M9 1393 aa18.37■□□□□ 0.53
TPM1-209ENST00000558072 RNF17Q9BXT8 1623 aaKnown RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms