RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 PREX2Q70Z35 1606 aa32.91■■■□□ 2.86
CASC4-204ENST00000557945 ARAP3Q8WWN8 1544 aa32.9■■■□□ 2.86
CASC4-204ENST00000557945 CDC42BPBQ9Y5S2 1711 aa32.88■■■□□ 2.85
CASC4-204ENST00000557945 ZNF777Q9ULD5 760 aaPredicted RBP32.87■■■□□ 2.85
CASC4-204ENST00000557945 ITSN2Q9NZM3 1697 aa32.86■■■□□ 2.85
CASC4-204ENST00000557945 NEO1Q92859 1461 aa32.86■■■□□ 2.85
CASC4-204ENST00000557945 PHLDB1Q86UU1 1377 aa32.86■■■□□ 2.85
CASC4-204ENST00000557945 CFAP74Q9C0B2 1584 aa32.84■■■□□ 2.85
CASC4-204ENST00000557945 MYOM3Q5VTT5 1437 aa32.83■■■□□ 2.85
CASC4-204ENST00000557945 AKNAQ7Z591 1439 aa32.83■■■□□ 2.85
CASC4-204ENST00000557945 ADGRL1O94910 1474 aa32.76■■■□□ 2.83
CASC4-204ENST00000557945 ZNF644Q9H582 1327 aaPredicted RBP32.75■■■□□ 2.83
CASC4-204ENST00000557945 MIA2Q96PC5 1412 aa32.73■■■□□ 2.83
CASC4-204ENST00000557945 SCAPERQ9BY12 1400 aa32.72■■■□□ 2.83
CASC4-204ENST00000557945 SAMD9LQ8IVG5 1584 aa32.72■■■□□ 2.83
CASC4-204ENST00000557945 KDM6BO15054 1643 aa32.71■■■□□ 2.83
CASC4-204ENST00000557945 FGD6Q6ZV73 1430 aa32.71■■■□□ 2.83
CASC4-204ENST00000557945 COL17A1Q9UMD9 1497 aaPredicted RBP32.7■■■□□ 2.83
CASC4-204ENST00000557945 CAMSAP2Q08AD1 1489 aa32.68■■■□□ 2.82
CASC4-204ENST00000557945 PLEKHH2Q8IVE3 1493 aa32.68■■■□□ 2.82
CASC4-204ENST00000557945 ABCC1P33527 1531 aa32.68■■■□□ 2.82
CASC4-204ENST00000557945 DENND4BO75064 1496 aaPredicted RBP32.67■■■□□ 2.82
CASC4-204ENST00000557945 RAPGEF3O95398 923 aa32.67■■■□□ 2.82
CASC4-204ENST00000557945 HNRNPMP52272 730 aaKnown RBP eCLIP32.66■■■□□ 2.82
CASC4-204ENST00000557945 SYCP2Q9BX26 1530 aa32.64■■■□□ 2.82
CASC4-204ENST00000557945 PTPN23Q9H3S7 1636 aa32.63■■■□□ 2.81
CASC4-204ENST00000557945 ARHGEF12Q9NZN5 1544 aa32.63■■■□□ 2.81
CASC4-204ENST00000557945 KIAA1107Q9UPP5 1409 aa32.63■■■□□ 2.81
CASC4-204ENST00000557945 FAM50AQ14320 339 aaKnown RBP32.61■■■□□ 2.81
CASC4-204ENST00000557945 POGZQ7Z3K3 1410 aa32.6■■■□□ 2.81
CASC4-204ENST00000557945 AFAP1Q8N556 730 aa32.58■■■□□ 2.81
CASC4-204ENST00000557945 TRAPPC8Q9Y2L5 1435 aa32.58■■■□□ 2.81
CASC4-204ENST00000557945 TCOF1Q13428 1488 aaKnown RBP32.57■■■□□ 2.8
CASC4-204ENST00000557945 ZNF518AQ6AHZ1 1483 aa32.55■■■□□ 2.8
CASC4-204ENST00000557945 MBD5Q9P267 1494 aa32.54■■■□□ 2.8
CASC4-204ENST00000557945 RICTORQ6R327 1708 aa32.54■■■□□ 2.8
CASC4-204ENST00000557945 FRMPD1Q5SYB0 1578 aa32.53■■■□□ 2.8
CASC4-204ENST00000557945 RSPH4AQ5TD94 716 aa32.51■■■□□ 2.79
CASC4-204ENST00000557945 MYT1LQ9UL68 1186 aa32.51■■■□□ 2.79
CASC4-204ENST00000557945 RRBP1Q9P2E9 1410 aaKnown RBP32.49■■■□□ 2.79
CASC4-204ENST00000557945 CCDC141Q6ZP82 1450 aa32.49■■■□□ 2.79
CASC4-204ENST00000557945 ARHGEF5Q12774 1597 aa32.47■■■□□ 2.79
CASC4-204ENST00000557945 SPAG9O60271 1321 aaKnown RBP32.45■■■□□ 2.79
CASC4-204ENST00000557945 KDM5CP41229 1560 aa32.44■■■□□ 2.78
CASC4-204ENST00000557945 TSPY4P0CV99 314 aa32.44■■■□□ 2.78
CASC4-204ENST00000557945 TSPY10P0CW01 314 aa32.44■■■□□ 2.78
CASC4-204ENST00000557945 ZMYM4Q5VZL5 1548 aa32.43■■■□□ 2.78
CASC4-204ENST00000557945 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.41■■■□□ 2.787e-7■■■■■ 52.8
CASC4-204ENST00000557945 ABCC5O15440 1437 aa32.4■■■□□ 2.78
CASC4-204ENST00000557945 DAPK1P53355 1430 aa32.4■■■□□ 2.78
CASC4-204ENST00000557945 DNMT1P26358 1616 aaKnown RBP32.38■■■□□ 2.77
CASC4-204ENST00000557945 HECW2Q9P2P5 1572 aa32.38■■■□□ 2.77
CASC4-204ENST00000557945 MAGI2Q86UL8 1455 aa32.38■■■□□ 2.77
CASC4-204ENST00000557945 ITGAEP38570 1179 aa32.38■■■□□ 2.77
CASC4-204ENST00000557945 MLH3Q9UHC1 1453 aa32.37■■■□□ 2.77
CASC4-204ENST00000557945 ZFYVE16Q7Z3T8 1539 aa32.36■■■□□ 2.77
CASC4-204ENST00000557945 YEATS2Q9ULM3 1422 aa32.35■■■□□ 2.77
CASC4-204ENST00000557945 C9orf84Q5VXU9 1444 aa32.33■■■□□ 2.77
CASC4-204ENST00000557945 ATP7AQ04656 1500 aa32.33■■■□□ 2.77
CASC4-204ENST00000557945 CHIC2Q9UKJ5 165 aa32.32■■■□□ 2.76
CASC4-204ENST00000557945 INO80Q9ULG1 1556 aaPredicted RBP32.31■■■□□ 2.76
CASC4-204ENST00000557945 RTEL1-TNFRSF6BF6WH68 1400 aa32.31■■■□□ 2.76
CASC4-204ENST00000557945 CROCC2H7BZ55 1655 aa32.3■■■□□ 2.76
CASC4-204ENST00000557945 KIDINS220Q9ULH0 1771 aa32.3■■■□□ 2.76
CASC4-204ENST00000557945 SHANK2Q9UPX8 1470 aa32.29■■■□□ 2.76
CASC4-204ENST00000557945 ARHGEF40Q8TER5 1519 aa32.29■■■□□ 2.76
CASC4-204ENST00000557945 MAST1Q9Y2H9 1570 aa32.27■■■□□ 2.76
CASC4-204ENST00000557945 PTPRKQ15262 1439 aa32.25■■■□□ 2.75
CASC4-204ENST00000557945 ABCA6Q8N139 1617 aa32.25■■■□□ 2.75
CASC4-204ENST00000557945 ATP10AO60312 1499 aa32.24■■■□□ 2.75
CASC4-204ENST00000557945 DIP2CQ9Y2E4 1556 aa32.23■■■□□ 2.75
CASC4-204ENST00000557945 ANKRD30AQ9BXX3 1397 aa32.2■■■□□ 2.75
CASC4-204ENST00000557945 RRP7BPQ9NSQ0 103 aa32.19■■■□□ 2.74
CASC4-204ENST00000557945 PLXNC1O60486 1568 aa32.15■■■□□ 2.74
CASC4-204ENST00000557945 A2MP01023 1474 aa32.15■■■□□ 2.74
CASC4-204ENST00000557945 KIF15Q9NS87 1388 aa32.15■■■□□ 2.74
CASC4-204ENST00000557945 ADGBQ8N7X0 1667 aa32.14■■■□□ 2.74
CASC4-204ENST00000557945 ADGRL2O95490 1459 aa32.14■■■□□ 2.74
CASC4-204ENST00000557945 NCOA1Q15788 1441 aa32.14■■■□□ 2.74
CASC4-204ENST00000557945 ARID4BQ4LE39 1312 aaPredicted RBP32.14■■■□□ 2.74
CASC4-204ENST00000557945 ROCK1Q13464 1354 aa32.11■■■□□ 2.73
CASC4-204ENST00000557945 DHX29Q7Z478 1369 aaKnown RBP32.11■■■□□ 2.73
CASC4-204ENST00000557945 REREQ9P2R6 1566 aa32.08■■■□□ 2.73
CASC4-204ENST00000557945 DUOX2Q9NRD8 1548 aa32.06■■■□□ 2.72
CASC4-204ENST00000557945 SIGLEC1Q9BZZ2 1709 aa32.03■■■□□ 2.72
CASC4-204ENST00000557945 TRIM26Q12899 539 aaPredicted RBP32.03■■■□□ 2.72
CASC4-204ENST00000557945 MLECQ14165 292 aa32.01■■■□□ 2.71
CASC4-204ENST00000557945 AGLP35573 1532 aa32■■■□□ 2.71
CASC4-204ENST00000557945 KIF3BO15066 747 aa32■■■□□ 2.71
CASC4-204ENST00000557945 ERBINQ96RT1 1412 aa31.98■■■□□ 2.71
CASC4-204ENST00000557945 ANKRD50Q9ULJ7 1429 aa31.98■■■□□ 2.71
CASC4-204ENST00000557945 GGT6Q6P531 493 aa31.94■■■□□ 2.7
CASC4-204ENST00000557945 NAIPQ13075 1403 aa31.93■■■□□ 2.7
CASC4-204ENST00000557945 HFM1A2PYH4 1435 aa31.93■■■□□ 2.7
CASC4-204ENST00000557945 EIF2AK4Q9P2K8 1649 aaKnown RBP31.9■■■□□ 2.7
CASC4-204ENST00000557945 BCORL1Q5H9F3 1711 aa31.88■■■□□ 2.69
CASC4-204ENST00000557945 GCC2Q8IWJ2 1684 aa31.87■■■□□ 2.69
CASC4-204ENST00000557945 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.84■■■□□ 2.691e-6■■■□□ 16.9
CASC4-204ENST00000557945 ESF1Q9H501 851 aaKnown RBP31.81■■■□□ 2.68
CASC4-204ENST00000557945 RNF17Q9BXT8 1623 aaKnown RBP31.81■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms