RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 PREX2Q70Z35 1606 aa21.33■■□□□ 1
SHMT2-234ENST00000557703 KANK4Q5T7N3 995 aaPredicted RBP21.32■■□□□ 1
SHMT2-234ENST00000557703 ARHGAP5Q13017 1502 aa21.32■■□□□ 1
SHMT2-234ENST00000557703 NCOA2Q15596 1464 aa21.32■■□□□ 1
SHMT2-234ENST00000557703 CFDP1Q9UEE9 299 aaPredicted RBP21.31■■□□□ 1
SHMT2-234ENST00000557703 DENND4BO75064 1496 aaPredicted RBP21.29■■□□□ 1
SHMT2-234ENST00000557703 PLEKHH2Q8IVE3 1493 aa21.29■■□□□ 1
SHMT2-234ENST00000557703 COL17A1Q9UMD9 1497 aaPredicted RBP21.29■■□□□ 1
SHMT2-234ENST00000557703 CDC42BPAQ5VT25 1732 aa21.29■■□□□ 1
SHMT2-234ENST00000557703 CDC42BPBQ9Y5S2 1711 aa21.29■■□□□ 1
SHMT2-234ENST00000557703 ADGRL1O94910 1474 aa21.28■■□□□ 1
SHMT2-234ENST00000557703 ITSN2Q9NZM3 1697 aa21.28■■□□□ 1
SHMT2-234ENST00000557703 KIAA1107Q9UPP5 1409 aa21.27■■□□□ 1
SHMT2-234ENST00000557703 SCAPERQ9BY12 1400 aa21.26■□□□□ 0.99
SHMT2-234ENST00000557703 RSPH4AQ5TD94 716 aa21.25■□□□□ 0.99
SHMT2-234ENST00000557703 MIA2Q96PC5 1412 aa21.24■□□□□ 0.99
SHMT2-234ENST00000557703 ZNF518AQ6AHZ1 1483 aa21.22■□□□□ 0.99
SHMT2-234ENST00000557703 MAGI2Q86UL8 1455 aa21.22■□□□□ 0.99
SHMT2-234ENST00000557703 MYOM3Q5VTT5 1437 aa21.21■□□□□ 0.99
SHMT2-234ENST00000557703 POGZQ7Z3K3 1410 aa21.21■□□□□ 0.99
SHMT2-234ENST00000557703 RAPGEF3O95398 923 aa21.2■□□□□ 0.98
SHMT2-234ENST00000557703 ABCC1P33527 1531 aa21.19■□□□□ 0.98
SHMT2-234ENST00000557703 ZNF777Q9ULD5 760 aaPredicted RBP21.18■□□□□ 0.98
SHMT2-234ENST00000557703 ZMYM4Q5VZL5 1548 aa21.17■□□□□ 0.98
SHMT2-234ENST00000557703 RICTORQ6R327 1708 aa21.17■□□□□ 0.98
SHMT2-234ENST00000557703 SAMD9LQ8IVG5 1584 aa21.14■□□□□ 0.98
SHMT2-234ENST00000557703 KDM5CP41229 1560 aa21.13■□□□□ 0.97
SHMT2-234ENST00000557703 FRMPD1Q5SYB0 1578 aa21.12■□□□□ 0.97
SHMT2-234ENST00000557703 MLH3Q9UHC1 1453 aa21.12■□□□□ 0.97
SHMT2-234ENST00000557703 AFAP1Q8N556 730 aa21.11■□□□□ 0.97
SHMT2-234ENST00000557703 ARHGEF12Q9NZN5 1544 aa21.1■□□□□ 0.97
SHMT2-234ENST00000557703 MBD5Q9P267 1494 aa21.1■□□□□ 0.97
SHMT2-234ENST00000557703 CAMSAP2Q08AD1 1489 aa21.09■□□□□ 0.97
SHMT2-234ENST00000557703 HNRNPMP52272 730 aaKnown RBP eCLIP21.09■□□□□ 0.97
SHMT2-234ENST00000557703 FGD6Q6ZV73 1430 aa21.09■□□□□ 0.97
SHMT2-234ENST00000557703 TRAPPC8Q9Y2L5 1435 aa21.09■□□□□ 0.97
SHMT2-234ENST00000557703 SYCP2Q9BX26 1530 aa21.09■□□□□ 0.97
SHMT2-234ENST00000557703 ZNF644Q9H582 1327 aaPredicted RBP21.07■□□□□ 0.96
SHMT2-234ENST00000557703 RTEL1-TNFRSF6BF6WH68 1400 aa21.07■□□□□ 0.96
SHMT2-234ENST00000557703 SPAG9O60271 1321 aaKnown RBP21.06■□□□□ 0.96
SHMT2-234ENST00000557703 ARHGEF5Q12774 1597 aa21.06■□□□□ 0.96
SHMT2-234ENST00000557703 TSPY4P0CV99 314 aa21.06■□□□□ 0.96
SHMT2-234ENST00000557703 TSPY10P0CW01 314 aa21.06■□□□□ 0.96
SHMT2-234ENST00000557703 ZFYVE16Q7Z3T8 1539 aa21.05■□□□□ 0.96
SHMT2-234ENST00000557703 TCOF1Q13428 1488 aaKnown RBP21.05■□□□□ 0.96
SHMT2-234ENST00000557703 CCDC141Q6ZP82 1450 aa21.05■□□□□ 0.96
SHMT2-234ENST00000557703 HECW2Q9P2P5 1572 aa21.04■□□□□ 0.96
SHMT2-234ENST00000557703 ARHGEF40Q8TER5 1519 aa21.04■□□□□ 0.96
SHMT2-234ENST00000557703 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.03■□□□□ 0.96
SHMT2-234ENST00000557703 ATP10AO60312 1499 aa21.02■□□□□ 0.96
SHMT2-234ENST00000557703 PTPN23Q9H3S7 1636 aa21.01■□□□□ 0.95
SHMT2-234ENST00000557703 MYT1LQ9UL68 1186 aa21.01■□□□□ 0.95
SHMT2-234ENST00000557703 REREQ9P2R6 1566 aa20.98■□□□□ 0.95
SHMT2-234ENST00000557703 C9orf84Q5VXU9 1444 aa20.98■□□□□ 0.95
SHMT2-234ENST00000557703 YEATS2Q9ULM3 1422 aa20.98■□□□□ 0.95
SHMT2-234ENST00000557703 ATP7AQ04656 1500 aa20.97■□□□□ 0.95
SHMT2-234ENST00000557703 KIDINS220Q9ULH0 1771 aa20.96■□□□□ 0.95
SHMT2-234ENST00000557703 SHANK2Q9UPX8 1470 aa20.95■□□□□ 0.94
SHMT2-234ENST00000557703 INO80Q9ULG1 1556 aaPredicted RBP20.95■□□□□ 0.94
SHMT2-234ENST00000557703 MAST1Q9Y2H9 1570 aa20.93■□□□□ 0.94
SHMT2-234ENST00000557703 FAM50AQ14320 339 aaKnown RBP20.92■□□□□ 0.94
SHMT2-234ENST00000557703 RRBP1Q9P2E9 1410 aaKnown RBP20.92■□□□□ 0.94
SHMT2-234ENST00000557703 AGLP35573 1532 aa20.92■□□□□ 0.94
SHMT2-234ENST00000557703 DIP2CQ9Y2E4 1556 aa20.92■□□□□ 0.94
SHMT2-234ENST00000557703 ABCC5O15440 1437 aa20.91■□□□□ 0.94
SHMT2-234ENST00000557703 DNMT1P26358 1616 aaKnown RBP20.91■□□□□ 0.94
SHMT2-234ENST00000557703 DAPK1P53355 1430 aa20.91■□□□□ 0.94
SHMT2-234ENST00000557703 ARID4BQ4LE39 1312 aaPredicted RBP20.9■□□□□ 0.94
SHMT2-234ENST00000557703 PPARGC1BQ86YN6 1023 aaKnown RBP20.9■□□□□ 0.94
SHMT2-234ENST00000557703 DHX29Q7Z478 1369 aaKnown RBP20.88■□□□□ 0.93
SHMT2-234ENST00000557703 PPP6R1Q9UPN7 881 aa20.88■□□□□ 0.93
SHMT2-234ENST00000557703 ADGBQ8N7X0 1667 aa20.88■□□□□ 0.93
SHMT2-234ENST00000557703 ABCA6Q8N139 1617 aa20.88■□□□□ 0.93
SHMT2-234ENST00000557703 A2MP01023 1474 aa20.88■□□□□ 0.93
SHMT2-234ENST00000557703 ANKRD30AQ9BXX3 1397 aa20.85■□□□□ 0.93
SHMT2-234ENST00000557703 PLXNC1O60486 1568 aa20.85■□□□□ 0.93
SHMT2-234ENST00000557703 CROCC2H7BZ55 1655 aa20.83■□□□□ 0.93
SHMT2-234ENST00000557703 ADGRL2O95490 1459 aa20.82■□□□□ 0.92
SHMT2-234ENST00000557703 ROCK1Q13464 1354 aa20.82■□□□□ 0.92
SHMT2-234ENST00000557703 NCOA1Q15788 1441 aa20.81■□□□□ 0.92
SHMT2-234ENST00000557703 KDM4FA0A1W2PPD8 638 aa20.81■□□□□ 0.92
SHMT2-234ENST00000557703 BCORL1Q5H9F3 1711 aa20.81■□□□□ 0.92
SHMT2-234ENST00000557703 DUOX2Q9NRD8 1548 aa20.8■□□□□ 0.92
SHMT2-234ENST00000557703 KIF15Q9NS87 1388 aa20.79■□□□□ 0.92
SHMT2-234ENST00000557703 ADAMTSL3P82987 1691 aa20.77■□□□□ 0.92
SHMT2-234ENST00000557703 ERBINQ96RT1 1412 aa20.77■□□□□ 0.91
SHMT2-234ENST00000557703 FAM135AQ9P2D6 1515 aa20.75■□□□□ 0.91
SHMT2-234ENST00000557703 AEBP2Q6ZN18 517 aaPredicted RBP20.75■□□□□ 0.91
SHMT2-234ENST00000557703 ESF1Q9H501 851 aaKnown RBP20.75■□□□□ 0.91
SHMT2-234ENST00000557703 CNTLNQ9NXG0 1405 aa20.75■□□□□ 0.91
SHMT2-234ENST00000557703 RRP7BPQ9NSQ0 103 aa20.74■□□□□ 0.91
SHMT2-234ENST00000557703 CHIC2Q9UKJ5 165 aa20.74■□□□□ 0.91
SHMT2-234ENST00000557703 EIF2AK4Q9P2K8 1649 aaKnown RBP20.74■□□□□ 0.91
SHMT2-234ENST00000557703 KIF3BO15066 747 aa20.73■□□□□ 0.91
SHMT2-234ENST00000557703 SIGLEC1Q9BZZ2 1709 aa20.73■□□□□ 0.91
SHMT2-234ENST00000557703 PTPRKQ15262 1439 aa20.7■□□□□ 0.9
SHMT2-234ENST00000557703 MLECQ14165 292 aa20.7■□□□□ 0.9
SHMT2-234ENST00000557703 GGT6Q6P531 493 aa20.69■□□□□ 0.9
SHMT2-234ENST00000557703 ACIN1Q9UKV3 1341 aaKnown RBP20.68■□□□□ 0.9
SHMT2-234ENST00000557703 ANKRD50Q9ULJ7 1429 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 132.8 ms