RNA–Protein interactions for RNA: ENST00000557644.5

NEDD1-213, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 1 (best) BASIC

Gene NEDD1, Length 2,367 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-213ENST00000557644 CFDP1Q9UEE9 299 aaPredicted RBP23.66■■□□□ 1.38
NEDD1-213ENST00000557644 TEX14Q8IWB6 1497 aa23.65■■□□□ 1.38
NEDD1-213ENST00000557644 EFCAB2Q5VUJ9 269 aa23.64■■□□□ 1.37
NEDD1-213ENST00000557644 ZNF777Q9ULD5 760 aaPredicted RBP23.64■■□□□ 1.37
NEDD1-213ENST00000557644 ARAP3Q8WWN8 1544 aa23.63■■□□□ 1.37
NEDD1-213ENST00000557644 MYOM3Q5VTT5 1437 aa23.63■■□□□ 1.37
NEDD1-213ENST00000557644 ZNF644Q9H582 1327 aaPredicted RBP23.61■■□□□ 1.37
NEDD1-213ENST00000557644 ITSN2Q9NZM3 1697 aa23.6■■□□□ 1.37
NEDD1-213ENST00000557644 AKNAQ7Z591 1439 aa23.59■■□□□ 1.37
NEDD1-213ENST00000557644 NEO1Q92859 1461 aa23.59■■□□□ 1.37
NEDD1-213ENST00000557644 COL17A1Q9UMD9 1497 aaPredicted RBP23.55■■□□□ 1.36
NEDD1-213ENST00000557644 SAMD9LQ8IVG5 1584 aa23.55■■□□□ 1.36
NEDD1-213ENST00000557644 FGD6Q6ZV73 1430 aa23.55■■□□□ 1.36
NEDD1-213ENST00000557644 CFAP74Q9C0B2 1584 aa23.55■■□□□ 1.36
NEDD1-213ENST00000557644 ADGRL1O94910 1474 aa23.54■■□□□ 1.36
NEDD1-213ENST00000557644 MIA2Q96PC5 1412 aa23.54■■□□□ 1.36
NEDD1-213ENST00000557644 SCAPERQ9BY12 1400 aa23.52■■□□□ 1.36
NEDD1-213ENST00000557644 ARHGEF12Q9NZN5 1544 aa23.51■■□□□ 1.35
NEDD1-213ENST00000557644 CAMSAP2Q08AD1 1489 aa23.51■■□□□ 1.35
NEDD1-213ENST00000557644 RAPGEF3O95398 923 aa23.51■■□□□ 1.35
NEDD1-213ENST00000557644 HNRNPMP52272 730 aaKnown RBP eCLIP23.51■■□□□ 1.35
NEDD1-213ENST00000557644 ABCC1P33527 1531 aa23.5■■□□□ 1.35
NEDD1-213ENST00000557644 SYCP2Q9BX26 1530 aa23.48■■□□□ 1.35
NEDD1-213ENST00000557644 PTPN23Q9H3S7 1636 aa23.48■■□□□ 1.35
NEDD1-213ENST00000557644 KDM6BO15054 1643 aa23.47■■□□□ 1.35
NEDD1-213ENST00000557644 DENND4BO75064 1496 aaPredicted RBP23.46■■□□□ 1.35
NEDD1-213ENST00000557644 FAM50AQ14320 339 aaKnown RBP23.46■■□□□ 1.35
NEDD1-213ENST00000557644 AFAP1Q8N556 730 aa23.46■■□□□ 1.35
NEDD1-213ENST00000557644 TRAPPC8Q9Y2L5 1435 aa23.46■■□□□ 1.35
NEDD1-213ENST00000557644 KIAA1107Q9UPP5 1409 aa23.45■■□□□ 1.35
NEDD1-213ENST00000557644 PLEKHH2Q8IVE3 1493 aa23.45■■□□□ 1.34
NEDD1-213ENST00000557644 MBD5Q9P267 1494 aa23.44■■□□□ 1.34
NEDD1-213ENST00000557644 TCOF1Q13428 1488 aaKnown RBP23.44■■□□□ 1.34
NEDD1-213ENST00000557644 POGZQ7Z3K3 1410 aa23.43■■□□□ 1.34
NEDD1-213ENST00000557644 RRBP1Q9P2E9 1410 aaKnown RBP23.41■■□□□ 1.34
NEDD1-213ENST00000557644 FRMPD1Q5SYB0 1578 aa23.41■■□□□ 1.34
NEDD1-213ENST00000557644 RICTORQ6R327 1708 aa23.39■■□□□ 1.34
NEDD1-213ENST00000557644 ZNF518AQ6AHZ1 1483 aa23.39■■□□□ 1.33
NEDD1-213ENST00000557644 CCDC141Q6ZP82 1450 aa23.35■■□□□ 1.33
NEDD1-213ENST00000557644 ARHGEF5Q12774 1597 aa23.34■■□□□ 1.33
NEDD1-213ENST00000557644 ABCC5O15440 1437 aa23.33■■□□□ 1.33
NEDD1-213ENST00000557644 KDM5CP41229 1560 aa23.33■■□□□ 1.33
NEDD1-213ENST00000557644 RSPH4AQ5TD94 716 aa23.33■■□□□ 1.33
NEDD1-213ENST00000557644 ITGAEP38570 1179 aa23.33■■□□□ 1.32
NEDD1-213ENST00000557644 DAPK1P53355 1430 aa23.32■■□□□ 1.32
NEDD1-213ENST00000557644 MYT1LQ9UL68 1186 aa23.32■■□□□ 1.32
NEDD1-213ENST00000557644 SPAG9O60271 1321 aaKnown RBP23.31■■□□□ 1.32
NEDD1-213ENST00000557644 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.31■■□□□ 1.32
NEDD1-213ENST00000557644 DNMT1P26358 1616 aaKnown RBP23.3■■□□□ 1.32
NEDD1-213ENST00000557644 ZMYM4Q5VZL5 1548 aa23.29■■□□□ 1.32
NEDD1-213ENST00000557644 TSPY4P0CV99 314 aa23.29■■□□□ 1.32
NEDD1-213ENST00000557644 TSPY10P0CW01 314 aa23.29■■□□□ 1.32
NEDD1-213ENST00000557644 YEATS2Q9ULM3 1422 aa23.28■■□□□ 1.32
NEDD1-213ENST00000557644 CHIC2Q9UKJ5 165 aa23.28■■□□□ 1.32
NEDD1-213ENST00000557644 PTPRKQ15262 1439 aa23.28■■□□□ 1.32
NEDD1-213ENST00000557644 MLH3Q9UHC1 1453 aa23.27■■□□□ 1.32
NEDD1-213ENST00000557644 HECW2Q9P2P5 1572 aa23.26■■□□□ 1.31
NEDD1-213ENST00000557644 C9orf84Q5VXU9 1444 aa23.26■■□□□ 1.31
NEDD1-213ENST00000557644 ZFYVE16Q7Z3T8 1539 aa23.25■■□□□ 1.31
NEDD1-213ENST00000557644 ATP7AQ04656 1500 aa23.24■■□□□ 1.31
NEDD1-213ENST00000557644 KIDINS220Q9ULH0 1771 aa23.24■■□□□ 1.31
NEDD1-213ENST00000557644 MAGI2Q86UL8 1455 aa23.24■■□□□ 1.31
NEDD1-213ENST00000557644 INO80Q9ULG1 1556 aaPredicted RBP23.23■■□□□ 1.31
NEDD1-213ENST00000557644 CROCC2H7BZ55 1655 aa23.23■■□□□ 1.31
NEDD1-213ENST00000557644 SHANK2Q9UPX8 1470 aa23.22■■□□□ 1.31
NEDD1-213ENST00000557644 RTEL1-TNFRSF6BF6WH68 1400 aa23.21■■□□□ 1.31
NEDD1-213ENST00000557644 MAST1Q9Y2H9 1570 aa23.19■■□□□ 1.3
NEDD1-213ENST00000557644 ABCA6Q8N139 1617 aa23.19■■□□□ 1.3
NEDD1-213ENST00000557644 ARHGEF40Q8TER5 1519 aa23.19■■□□□ 1.3
NEDD1-213ENST00000557644 DIP2CQ9Y2E4 1556 aa23.18■■□□□ 1.3
NEDD1-213ENST00000557644 RRP7BPQ9NSQ0 103 aa23.18■■□□□ 1.3
NEDD1-213ENST00000557644 NCOA1Q15788 1441 aa23.15■■□□□ 1.3
NEDD1-213ENST00000557644 ATP10AO60312 1499 aa23.15■■□□□ 1.3
NEDD1-213ENST00000557644 ANKRD30AQ9BXX3 1397 aa23.14■■□□□ 1.29
NEDD1-213ENST00000557644 ADGRL2O95490 1459 aa23.13■■□□□ 1.29
NEDD1-213ENST00000557644 KIF15Q9NS87 1388 aa23.13■■□□□ 1.29
NEDD1-213ENST00000557644 PLXNC1O60486 1568 aa23.11■■□□□ 1.29
NEDD1-213ENST00000557644 A2MP01023 1474 aa23.1■■□□□ 1.29
NEDD1-213ENST00000557644 ROCK1Q13464 1354 aa23.1■■□□□ 1.29
NEDD1-213ENST00000557644 ADGBQ8N7X0 1667 aa23.1■■□□□ 1.29
NEDD1-213ENST00000557644 TRIM26Q12899 539 aaPredicted RBP23.09■■□□□ 1.29
NEDD1-213ENST00000557644 SIGLEC1Q9BZZ2 1709 aa23.09■■□□□ 1.29
NEDD1-213ENST00000557644 DHX29Q7Z478 1369 aaKnown RBP23.08■■□□□ 1.28
NEDD1-213ENST00000557644 ARID4BQ4LE39 1312 aaPredicted RBP23.06■■□□□ 1.28
NEDD1-213ENST00000557644 REREQ9P2R6 1566 aa23.04■■□□□ 1.28
NEDD1-213ENST00000557644 DUOX2Q9NRD8 1548 aa23.04■■□□□ 1.28
NEDD1-213ENST00000557644 NAIPQ13075 1403 aa23.01■■□□□ 1.27
NEDD1-213ENST00000557644 KIF3BO15066 747 aa23.01■■□□□ 1.27
NEDD1-213ENST00000557644 ANKRD50Q9ULJ7 1429 aa23.01■■□□□ 1.27
NEDD1-213ENST00000557644 MLECQ14165 292 aa23■■□□□ 1.27
NEDD1-213ENST00000557644 HFM1A2PYH4 1435 aa23■■□□□ 1.27
NEDD1-213ENST00000557644 AGLP35573 1532 aa22.98■■□□□ 1.27
NEDD1-213ENST00000557644 ERBINQ96RT1 1412 aa22.98■■□□□ 1.27
NEDD1-213ENST00000557644 GGT6Q6P531 493 aa22.96■■□□□ 1.27
NEDD1-213ENST00000557644 GCC2Q8IWJ2 1684 aa22.93■■□□□ 1.26
NEDD1-213ENST00000557644 EIF2AK4Q9P2K8 1649 aaKnown RBP22.91■■□□□ 1.26
NEDD1-213ENST00000557644 PCGF6Q9BYE7 350 aa22.91■■□□□ 1.26
NEDD1-213ENST00000557644 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.9■■□□□ 1.26
NEDD1-213ENST00000557644 SETD5Q9C0A6 1442 aa22.9■■□□□ 1.26
NEDD1-213ENST00000557644 BCORL1Q5H9F3 1711 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms