RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 DENND4BO75064 1496 aaPredicted RBP19.77■□□□□ 0.76
SLIRP-209ENST00000557342 FRMPD1Q5SYB0 1578 aa19.75■□□□□ 0.75
SLIRP-209ENST00000557342 ADGRL1O94910 1474 aa19.75■□□□□ 0.75
SLIRP-209ENST00000557342 RAPGEF3O95398 923 aa19.74■□□□□ 0.75
SLIRP-209ENST00000557342 MAP3K1Q13233 1512 aa19.74■□□□□ 0.75
SLIRP-209ENST00000557342 SUPT6HQ7KZ85 1726 aaKnown RBP19.73■□□□□ 0.75
SLIRP-209ENST00000557342 ITSN2Q9NZM3 1697 aa19.71■□□□□ 0.75
SLIRP-209ENST00000557342 SCAPERQ9BY12 1400 aa19.71■□□□□ 0.75
SLIRP-209ENST00000557342 AEBP2Q6ZN18 517 aaPredicted RBP19.69■□□□□ 0.74
SLIRP-209ENST00000557342 ZMYM4Q5VZL5 1548 aa19.69■□□□□ 0.74
SLIRP-209ENST00000557342 GPATCH8Q9UKJ3 1502 aaKnown RBP19.69■□□□□ 0.74
SLIRP-209ENST00000557342 CCNB3Q8WWL7 1395 aa19.69■□□□□ 0.74
SLIRP-209ENST00000557342 POGZQ7Z3K3 1410 aa19.68■□□□□ 0.74
SLIRP-209ENST00000557342 LRRC9Q6ZRR7 1453 aa19.67■□□□□ 0.74
SLIRP-209ENST00000557342 APLP2Q06481 763 aa19.67■□□□□ 0.74
SLIRP-209ENST00000557342 ABCC1P33527 1531 aa19.66■□□□□ 0.74
SLIRP-209ENST00000557342 ZNF518AQ6AHZ1 1483 aa19.65■□□□□ 0.74
SLIRP-209ENST00000557342 MAGI2Q86UL8 1455 aa19.65■□□□□ 0.74
SLIRP-209ENST00000557342 ARHGEF40Q8TER5 1519 aa19.64■□□□□ 0.73
SLIRP-209ENST00000557342 SAMD9LQ8IVG5 1584 aa19.63■□□□□ 0.73
SLIRP-209ENST00000557342 NCOA2Q15596 1464 aa19.63■□□□□ 0.73
SLIRP-209ENST00000557342 CFDP1Q9UEE9 299 aaPredicted RBP19.63■□□□□ 0.73
SLIRP-209ENST00000557342 ZFYVE16Q7Z3T8 1539 aa19.62■□□□□ 0.73
SLIRP-209ENST00000557342 KDM5CP41229 1560 aa19.61■□□□□ 0.73
SLIRP-209ENST00000557342 PLEKHH2Q8IVE3 1493 aa19.61■□□□□ 0.73
SLIRP-209ENST00000557342 ZNF777Q9ULD5 760 aaPredicted RBP19.61■□□□□ 0.73
SLIRP-209ENST00000557342 HECW2Q9P2P5 1572 aa19.58■□□□□ 0.73
SLIRP-209ENST00000557342 ARHGEF12Q9NZN5 1544 aa19.58■□□□□ 0.73
SLIRP-209ENST00000557342 SYCP2Q9BX26 1530 aa19.57■□□□□ 0.72
SLIRP-209ENST00000557342 KANK4Q5T7N3 995 aaPredicted RBP19.57■□□□□ 0.72
SLIRP-209ENST00000557342 KIAA1107Q9UPP5 1409 aa19.57■□□□□ 0.72
SLIRP-209ENST00000557342 KDM4FA0A1W2PPD8 638 aa19.56■□□□□ 0.72
SLIRP-209ENST00000557342 AFAP1Q8N556 730 aa19.56■□□□□ 0.72
SLIRP-209ENST00000557342 YEATS2Q9ULM3 1422 aa19.55■□□□□ 0.72
SLIRP-209ENST00000557342 TRAPPC8Q9Y2L5 1435 aa19.55■□□□□ 0.72
SLIRP-209ENST00000557342 MLH3Q9UHC1 1453 aa19.54■□□□□ 0.72
SLIRP-209ENST00000557342 MYT1LQ9UL68 1186 aa19.53■□□□□ 0.72
SLIRP-209ENST00000557342 ATP10AO60312 1499 aa19.52■□□□□ 0.72
SLIRP-209ENST00000557342 BCORL1Q5H9F3 1711 aa19.51■□□□□ 0.71
SLIRP-209ENST00000557342 HNRNPMP52272 730 aaKnown RBP eCLIP19.51■□□□□ 0.715e-9■■■■■ 34.7
SLIRP-209ENST00000557342 KIDINS220Q9ULH0 1771 aa19.51■□□□□ 0.71
SLIRP-209ENST00000557342 C9orf84Q5VXU9 1444 aa19.51■□□□□ 0.71
SLIRP-209ENST00000557342 ARID4BQ4LE39 1312 aaPredicted RBP19.51■□□□□ 0.71
SLIRP-209ENST00000557342 DIP2CQ9Y2E4 1556 aa19.49■□□□□ 0.71
SLIRP-209ENST00000557342 CAMSAP2Q08AD1 1489 aa19.48■□□□□ 0.71
SLIRP-209ENST00000557342 ABCA6Q8N139 1617 aa19.48■□□□□ 0.71
SLIRP-209ENST00000557342 ADAMTSL3P82987 1691 aa19.48■□□□□ 0.71
SLIRP-209ENST00000557342 MYOM3Q5VTT5 1437 aa19.48■□□□□ 0.71
SLIRP-209ENST00000557342 REREQ9P2R6 1566 aa19.48■□□□□ 0.71
SLIRP-209ENST00000557342 ZNF644Q9H582 1327 aaPredicted RBP19.48■□□□□ 0.71
SLIRP-209ENST00000557342 MIA2Q96PC5 1412 aa19.47■□□□□ 0.71
SLIRP-209ENST00000557342 SIGLEC1Q9BZZ2 1709 aa19.47■□□□□ 0.71
SLIRP-209ENST00000557342 SPAG9O60271 1321 aaKnown RBP19.47■□□□□ 0.71
SLIRP-209ENST00000557342 RSPH4AQ5TD94 716 aa19.46■□□□□ 0.71
SLIRP-209ENST00000557342 MBD5Q9P267 1494 aa19.46■□□□□ 0.71
SLIRP-209ENST00000557342 INO80Q9ULG1 1556 aaPredicted RBP19.45■□□□□ 0.7
SLIRP-209ENST00000557342 ATP7AQ04656 1500 aa19.45■□□□□ 0.7
SLIRP-209ENST00000557342 ARHGEF5Q12774 1597 aa19.44■□□□□ 0.7
SLIRP-209ENST00000557342 CCDC141Q6ZP82 1450 aa19.43■□□□□ 0.7
SLIRP-209ENST00000557342 ADGBQ8N7X0 1667 aa19.41■□□□□ 0.7
SLIRP-209ENST00000557342 MADDQ8WXG6 1647 aa19.4■□□□□ 0.7
SLIRP-209ENST00000557342 RTEL1-TNFRSF6BF6WH68 1400 aa19.4■□□□□ 0.7
SLIRP-209ENST00000557342 PTPN23Q9H3S7 1636 aa19.4■□□□□ 0.7
SLIRP-209ENST00000557342 FER1L4A9Z1Z3 1794 aa19.39■□□□□ 0.7
SLIRP-209ENST00000557342 AGLP35573 1532 aa19.39■□□□□ 0.69
SLIRP-209ENST00000557342 RIMS1Q86UR5 1692 aaKnown RBP19.37■□□□□ 0.69
SLIRP-209ENST00000557342 FGD6Q6ZV73 1430 aa19.36■□□□□ 0.69
SLIRP-209ENST00000557342 TSPY4P0CV99 314 aa19.36■□□□□ 0.69
SLIRP-209ENST00000557342 TSPY10P0CW01 314 aa19.36■□□□□ 0.69
SLIRP-209ENST00000557342 MLECQ14165 292 aa19.35■□□□□ 0.69
SLIRP-209ENST00000557342 MAST1Q9Y2H9 1570 aa19.34■□□□□ 0.69
SLIRP-209ENST00000557342 A2MP01023 1474 aa19.34■□□□□ 0.69
SLIRP-209ENST00000557342 PTPRMP28827 1452 aa19.34■□□□□ 0.69
SLIRP-209ENST00000557342 PLXNC1O60486 1568 aa19.33■□□□□ 0.69
SLIRP-209ENST00000557342 TCOF1Q13428 1488 aaKnown RBP19.33■□□□□ 0.68
SLIRP-209ENST00000557342 CROCC2H7BZ55 1655 aa19.32■□□□□ 0.68
SLIRP-209ENST00000557342 DNMT1P26358 1616 aaKnown RBP19.29■□□□□ 0.68
SLIRP-209ENST00000557342 DHX29Q7Z478 1369 aaKnown RBP19.27■□□□□ 0.68
SLIRP-209ENST00000557342 SHANK2Q9UPX8 1470 aa19.27■□□□□ 0.67
SLIRP-209ENST00000557342 ESF1Q9H501 851 aaKnown RBP19.25■□□□□ 0.67
SLIRP-209ENST00000557342 ABCC5O15440 1437 aa19.25■□□□□ 0.67
SLIRP-209ENST00000557342 DAPK1P53355 1430 aa19.25■□□□□ 0.67
SLIRP-209ENST00000557342 CNTLNQ9NXG0 1405 aa19.23■□□□□ 0.67
SLIRP-209ENST00000557342 MROH2AA6NES4 1674 aa19.22■□□□□ 0.67
SLIRP-209ENST00000557342 FAM50AQ14320 339 aaKnown RBP19.22■□□□□ 0.67
SLIRP-209ENST00000557342 PPARGC1BQ86YN6 1023 aaKnown RBP19.21■□□□□ 0.67
SLIRP-209ENST00000557342 C3P01024 1663 aa19.2■□□□□ 0.66
SLIRP-209ENST00000557342 PPP6R1Q9UPN7 881 aa19.2■□□□□ 0.66
SLIRP-209ENST00000557342 EIF2AK4Q9P2K8 1649 aaKnown RBP19.2■□□□□ 0.66
SLIRP-209ENST00000557342 DUOX2Q9NRD8 1548 aa19.2■□□□□ 0.66
SLIRP-209ENST00000557342 CLTCQ00610 1675 aaKnown RBP19.19■□□□□ 0.66
SLIRP-209ENST00000557342 GGT6Q6P531 493 aa19.18■□□□□ 0.66
SLIRP-209ENST00000557342 KIF3BO15066 747 aa19.17■□□□□ 0.66
SLIRP-209ENST00000557342 PLPPR3Q6T4P5 718 aa19.17■□□□□ 0.66
SLIRP-209ENST00000557342 SETD1BQ9UPS6 1966 aaKnown RBP19.17■□□□□ 0.66
SLIRP-209ENST00000557342 FAM135AQ9P2D6 1515 aa19.16■□□□□ 0.66
SLIRP-209ENST00000557342 ANKRD30AQ9BXX3 1397 aa19.16■□□□□ 0.66
SLIRP-209ENST00000557342 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.15■□□□□ 0.66
SLIRP-209ENST00000557342 KIF15Q9NS87 1388 aa19.15■□□□□ 0.66
SLIRP-209ENST00000557342 RNF17Q9BXT8 1623 aaKnown RBP19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms