RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 ECM2O94769 699 aaPredicted RBP10.38□□□□□ -0.75
SRP54-212ENST00000556992 FBXO22Q8NEZ5 403 aa10.37□□□□□ -0.75
SRP54-212ENST00000556992 STK25O00506 426 aa10.36□□□□□ -0.75
SRP54-212ENST00000556992 VARS2Q5ST30 1063 aaKnown RBP10.36□□□□□ -0.75
SRP54-212ENST00000556992 RGL2O15211 777 aa10.35□□□□□ -0.75
SRP54-212ENST00000556992 MFRPQ9BY79 579 aa10.35□□□□□ -0.75
SRP54-212ENST00000556992 NLRP6P59044 892 aa10.34□□□□□ -0.75
SRP54-212ENST00000556992 RIMBP2O15034 1052 aa10.33□□□□□ -0.76
SRP54-212ENST00000556992 PKD2Q13563 968 aa10.33□□□□□ -0.76
SRP54-212ENST00000556992 KHSRPQ92945 711 aaKnown RBP eCLIP10.33□□□□□ -0.76
SRP54-212ENST00000556992 ARSIQ5FYB1 569 aa10.31□□□□□ -0.76
SRP54-212ENST00000556992 GPR153Q6NV75 609 aa10.31□□□□□ -0.76
SRP54-212ENST00000556992 TAOK2Q9UL54 1235 aa10.26□□□□□ -0.77
SRP54-212ENST00000556992 C2orf72A6NCS6 295 aa10.25□□□□□ -0.77
SRP54-212ENST00000556992 ZSWIM6Q9HCJ5 1215 aa10.25□□□□□ -0.77
SRP54-212ENST00000556992 PPP1R37O75864 691 aa10.22□□□□□ -0.77
SRP54-212ENST00000556992 KIF3CO14782 793 aa10.21□□□□□ -0.77
SRP54-212ENST00000556992 ZNF687Q8N1G0 1237 aa10.21□□□□□ -0.77
SRP54-212ENST00000556992 ZNF316A6NFI3 1004 aaPredicted RBP10.18□□□□□ -0.78
SRP54-212ENST00000556992 NUDT7P0C024 238 aa10.18□□□□□ -0.78
SRP54-212ENST00000556992 RNF166Q96A37 237 aaPredicted RBP10.17□□□□□ -0.78
SRP54-212ENST00000556992 ANKRD13DQ6ZTN6 518 aa10.15□□□□□ -0.78
SRP54-212ENST00000556992 TMC2Q8TDI7 906 aa10.13□□□□□ -0.79
SRP54-212ENST00000556992 MYT1LQ9UL68 1186 aa10.13□□□□□ -0.79
SRP54-212ENST00000556992 LHX6Q9UPM6 363 aa10.12□□□□□ -0.79
SRP54-212ENST00000556992 AXIN2Q9Y2T1 843 aa10.12□□□□□ -0.79
SRP54-212ENST00000556992 PCDHGA4Q9Y5G9 962 aa10.12□□□□□ -0.79
SRP54-212ENST00000556992 POTEEQ6S8J3 1075 aa10.09□□□□□ -0.79
SRP54-212ENST00000556992 LSM11P83369 360 aaKnown RBP eCLIP10.06□□□□□ -0.8
SRP54-212ENST00000556992 SLC34A2O95436 690 aa10.04□□□□□ -0.8
SRP54-212ENST00000556992 CHGAP10645 457 aaKnown RBP10.04□□□□□ -0.8
SRP54-212ENST00000556992 HS6ST3Q8IZP7 471 aa10.03□□□□□ -0.8
SRP54-212ENST00000556992 PLPP6Q8IY26 295 aa10□□□□□ -0.81
SRP54-212ENST00000556992 DSG2Q14126 1118 aa9.99□□□□□ -0.81
SRP54-212ENST00000556992 NKX1-1Q15270 411 aaPredicted RBP9.99□□□□□ -0.81
SRP54-212ENST00000556992 KDM4FA0A1W2PPD8 638 aa9.96□□□□□ -0.82
SRP54-212ENST00000556992 PTGER2P43116 358 aa9.96□□□□□ -0.82
SRP54-212ENST00000556992 FOXK1P85037 733 aa9.96□□□□□ -0.82
SRP54-212ENST00000556992 GPHNQ9NQX3 736 aaPredicted RBP9.96□□□□□ -0.82
SRP54-212ENST00000556992 PBX2P40425 430 aa9.95□□□□□ -0.82
SRP54-212ENST00000556992 PSEN2P49810 448 aa9.95□□□□□ -0.82
SRP54-212ENST00000556992 PTCD2Q8WV60 388 aaKnown RBP9.95□□□□□ -0.82
SRP54-212ENST00000556992 DMRTA1Q5VZB9 504 aa9.94□□□□□ -0.82
SRP54-212ENST00000556992 ADGRD1Q6QNK2 874 aa9.92□□□□□ -0.82
SRP54-212ENST00000556992 UPF1Q92900 1129 aaKnown RBP eCLIP9.92□□□□□ -0.82
SRP54-212ENST00000556992 ARHGAP33O14559 1287 aa9.91□□□□□ -0.82
SRP54-212ENST00000556992 PPP4R3BQ5MIZ7 849 aa9.86□□□□□ -0.83
SRP54-212ENST00000556992 PSDA5PKW4 1024 aaPredicted RBP9.85□□□□□ -0.83
SRP54-212ENST00000556992 KCNK17Q96T54 332 aa9.85□□□□□ -0.83
SRP54-212ENST00000556992 CRISPLD2Q9H0B8 497 aa9.84□□□□□ -0.83
SRP54-212ENST00000556992 NCKAP5LQ9HCH0 1330 aa9.83□□□□□ -0.84
SRP54-212ENST00000556992 HRO43593 1189 aa9.83□□□□□ -0.84
SRP54-212ENST00000556992 TBC1D12O60347 775 aa9.83□□□□□ -0.84
SRP54-212ENST00000556992 PPP1R15BQ5SWA1 713 aa9.83□□□□□ -0.84
SRP54-212ENST00000556992 OXER1Q8TDS5 423 aa9.83□□□□□ -0.84
SRP54-212ENST00000556992 DNAJC5Q9H3Z4 198 aa9.82□□□□□ -0.84
SRP54-212ENST00000556992 ZNF454Q8N9F8 522 aa9.81□□□□□ -0.84
SRP54-212ENST00000556992 DCAF8L2P0C7V8 631 aa9.8□□□□□ -0.84
SRP54-212ENST00000556992 KCTD12Q96CX2 325 aaKnown RBP9.8□□□□□ -0.84
SRP54-212ENST00000556992 PLA2G2EQ9NZK7 142 aa9.8□□□□□ -0.84
SRP54-212ENST00000556992 TK2O00142 265 aa9.78□□□□□ -0.84
SRP54-212ENST00000556992 GTPBP6O43824 516 aaPredicted RBP9.78□□□□□ -0.84
SRP54-212ENST00000556992 HCSTQ9UBK5 93 aa9.78□□□□□ -0.84
SRP54-212ENST00000556992 LARP6Q9BRS8 491 aaKnown RBP9.75□□□□□ -0.85
SRP54-212ENST00000556992 PDE4AP27815 886 aa9.74□□□□□ -0.85
SRP54-212ENST00000556992 RYDENQ9NUL5 291 aaKnown RBP9.74□□□□□ -0.85
SRP54-212ENST00000556992 VPS9D1Q9Y2B5 631 aa9.74□□□□□ -0.85
SRP54-212ENST00000556992 STAC3Q96MF2 364 aa9.73□□□□□ -0.85
SRP54-212ENST00000556992 EVI5O60447 810 aa9.72□□□□□ -0.85
SRP54-212ENST00000556992 FOSBP53539 338 aa9.72□□□□□ -0.85
SRP54-212ENST00000556992 PTPN5P54829 565 aa9.72□□□□□ -0.85
SRP54-212ENST00000556992 KCNH8Q96L42 1107 aa9.72□□□□□ -0.85
SRP54-212ENST00000556992 CADPS2Q86UW7 1296 aa9.71□□□□□ -0.86
SRP54-212ENST00000556992 DDX27Q96GQ7 796 aaKnown RBP9.71□□□□□ -0.86
SRP54-212ENST00000556992 BCL2L12Q9HB09 334 aa9.71□□□□□ -0.86
SRP54-212ENST00000556992 ADAM33Q9BZ11 813 aa9.7□□□□□ -0.86
SRP54-212ENST00000556992 EMILIN3Q9NT22 766 aa9.69□□□□□ -0.86
SRP54-212ENST00000556992 PTPREP23469 700 aa9.68□□□□□ -0.86
SRP54-212ENST00000556992 ZBED2Q9BTP6 218 aa9.67□□□□□ -0.86
SRP54-212ENST00000556992 MAP3K9P80192 1104 aa9.66□□□□□ -0.86
SRP54-212ENST00000556992 JPH4Q96JJ6 628 aa9.66□□□□□ -0.86
SRP54-212ENST00000556992 ANO8Q9HCE9 1232 aaPredicted RBP9.66□□□□□ -0.86
SRP54-212ENST00000556992 MFSD10Q14728 455 aa9.65□□□□□ -0.86
SRP54-212ENST00000556992 ZDHHC16Q969W1 377 aa9.65□□□□□ -0.86
SRP54-212ENST00000556992 BHMG1C9JSJ3 638 aaPredicted RBP9.64□□□□□ -0.87
SRP54-212ENST00000556992 PROX2Q3B8N5 592 aa9.61□□□□□ -0.87
SRP54-212ENST00000556992 THSD4Q6ZMP0 1018 aa9.61□□□□□ -0.87
SRP54-212ENST00000556992 PCDHGA10Q9Y5H3 936 aa9.61□□□□□ -0.87
SRP54-212ENST00000556992 GOLGA8CPA6NN73 597 aa9.6□□□□□ -0.87
SRP54-212ENST00000556992 COL9A1P20849 921 aa9.6□□□□□ -0.87
SRP54-212ENST00000556992 MRPL50Q8N5N7 158 aaKnown RBP9.6□□□□□ -0.87
SRP54-212ENST00000556992 WNT2BQ93097 391 aa9.6□□□□□ -0.87
SRP54-212ENST00000556992 SLC4A5Q9BY07 1137 aa9.6□□□□□ -0.87
SRP54-212ENST00000556992 DPYSL4O14531 572 aa9.55□□□□□ -0.88
SRP54-212ENST00000556992 PPP1R3GB7ZBB8 358 aa9.54□□□□□ -0.88
SRP54-212ENST00000556992 NBPF3Q9H094 633 aa9.54□□□□□ -0.88
SRP54-212ENST00000556992 NISCHQ9Y2I1 1504 aa9.53□□□□□ -0.88
SRP54-212ENST00000556992 TYW1BQ6NUM6 668 aa9.52□□□□□ -0.89
SRP54-212ENST00000556992 PHF14O94880 888 aa9.51□□□□□ -0.89
SRP54-212ENST00000556992 BCAMP50895 628 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms