RNA–Protein interactions for RNA: ENST00000556952.3

SIX4-203, Transcript of SIX homeobox 4, humanhuman

TSL 5

Gene SIX4, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-203ENST00000556952 COL17A1Q9UMD9 1497 aaPredicted RBP36.17■■■■□ 3.38
SIX4-203ENST00000556952 FGD6Q6ZV73 1430 aa36.16■■■■□ 3.38
SIX4-203ENST00000556952 PLCH2O75038 1416 aa36.14■■■■□ 3.38
SIX4-203ENST00000556952 CDC42BPAQ5VT25 1732 aa36.13■■■■□ 3.37
SIX4-203ENST00000556952 CDC42BPBQ9Y5S2 1711 aa36.12■■■■□ 3.37
SIX4-203ENST00000556952 NEO1Q92859 1461 aa36.12■■■■□ 3.37
SIX4-203ENST00000556952 PREX2Q70Z35 1606 aa36.12■■■■□ 3.37
SIX4-203ENST00000556952 CFAP74Q9C0B2 1584 aa36.12■■■■□ 3.37
SIX4-203ENST00000556952 FANCAO15360 1455 aa36.11■■■■□ 3.37
SIX4-203ENST00000556952 MIA2Q96PC5 1412 aa36.1■■■■□ 3.37
SIX4-203ENST00000556952 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.1■■■■□ 3.37
SIX4-203ENST00000556952 ARAP3Q8WWN8 1544 aa36.09■■■■□ 3.37
SIX4-203ENST00000556952 PTPN23Q9H3S7 1636 aa36.07■■■■□ 3.36
SIX4-203ENST00000556952 ARHGAP5Q13017 1502 aa36.04■■■■□ 3.36
SIX4-203ENST00000556952 AKNAQ7Z591 1439 aa36.03■■■■□ 3.36
SIX4-203ENST00000556952 GPATCH8Q9UKJ3 1502 aaKnown RBP36.03■■■■□ 3.36
SIX4-203ENST00000556952 TCOF1Q13428 1488 aaKnown RBP36.02■■■■□ 3.36
SIX4-203ENST00000556952 FRMPD1Q5SYB0 1578 aa35.96■■■■□ 3.35
SIX4-203ENST00000556952 EFCAB2Q5VUJ9 269 aa35.95■■■■□ 3.35
SIX4-203ENST00000556952 FAM50AQ14320 339 aaKnown RBP35.93■■■■□ 3.34
SIX4-203ENST00000556952 ADGRL1O94910 1474 aa35.93■■■■□ 3.34
SIX4-203ENST00000556952 RICTORQ6R327 1708 aa35.93■■■■□ 3.34
SIX4-203ENST00000556952 RAPGEF3O95398 923 aa35.88■■■■□ 3.33
SIX4-203ENST00000556952 DENND4BO75064 1496 aaPredicted RBP35.88■■■■□ 3.33
SIX4-203ENST00000556952 SAMD9LQ8IVG5 1584 aa35.87■■■■□ 3.33
SIX4-203ENST00000556952 CFDP1Q9UEE9 299 aaPredicted RBP35.86■■■■□ 3.33
SIX4-203ENST00000556952 SCAPERQ9BY12 1400 aa35.86■■■■□ 3.33
SIX4-203ENST00000556952 ABCC1P33527 1531 aa35.85■■■■□ 3.33
SIX4-203ENST00000556952 CAMSAP2Q08AD1 1489 aa35.83■■■■□ 3.33
SIX4-203ENST00000556952 ARHGEF12Q9NZN5 1544 aa35.8■■■■□ 3.32
SIX4-203ENST00000556952 POGZQ7Z3K3 1410 aa35.8■■■■□ 3.32
SIX4-203ENST00000556952 ZNF777Q9ULD5 760 aaPredicted RBP35.79■■■■□ 3.32
SIX4-203ENST00000556952 DNMT1P26358 1616 aaKnown RBP35.78■■■■□ 3.32
SIX4-203ENST00000556952 SYCP2Q9BX26 1530 aa35.75■■■■□ 3.31
SIX4-203ENST00000556952 ZMYM4Q5VZL5 1548 aa35.74■■■■□ 3.31
SIX4-203ENST00000556952 ITGAEP38570 1179 aa35.72■■■■□ 3.31
SIX4-203ENST00000556952 TRAPPC8Q9Y2L5 1435 aa35.7■■■■□ 3.31
SIX4-203ENST00000556952 ZNF644Q9H582 1327 aaPredicted RBP35.7■■■■□ 3.31
SIX4-203ENST00000556952 CROCC2H7BZ55 1655 aa35.69■■■■□ 3.3
SIX4-203ENST00000556952 KDM5CP41229 1560 aa35.69■■■■□ 3.3
SIX4-203ENST00000556952 ZNF518AQ6AHZ1 1483 aa35.69■■■■□ 3.3
SIX4-203ENST00000556952 PLEKHH2Q8IVE3 1493 aa35.67■■■■□ 3.3
SIX4-203ENST00000556952 DAPK1P53355 1430 aa35.67■■■■□ 3.3
SIX4-203ENST00000556952 ARHGEF5Q12774 1597 aa35.66■■■■□ 3.3
SIX4-203ENST00000556952 AFAP1Q8N556 730 aa35.65■■■■□ 3.3
SIX4-203ENST00000556952 ARHGEF40Q8TER5 1519 aa35.65■■■■□ 3.3
SIX4-203ENST00000556952 KIAA1107Q9UPP5 1409 aa35.64■■■■□ 3.3
SIX4-203ENST00000556952 PTPRKQ15262 1439 aa35.64■■■■□ 3.3
SIX4-203ENST00000556952 HNRNPMP52272 730 aaKnown RBP eCLIP35.63■■■■□ 3.29
SIX4-203ENST00000556952 ABCC5O15440 1437 aa35.61■■■■□ 3.29
SIX4-203ENST00000556952 ZFYVE16Q7Z3T8 1539 aa35.61■■■■□ 3.29
SIX4-203ENST00000556952 HECW2Q9P2P5 1572 aa35.6■■■■□ 3.29
SIX4-203ENST00000556952 YEATS2Q9ULM3 1422 aa35.6■■■■□ 3.29
SIX4-203ENST00000556952 MAGI2Q86UL8 1455 aa35.58■■■■□ 3.29
SIX4-203ENST00000556952 MBD5Q9P267 1494 aa35.58■■■■□ 3.29
SIX4-203ENST00000556952 ADGBQ8N7X0 1667 aa35.57■■■■□ 3.29
SIX4-203ENST00000556952 SHANK2Q9UPX8 1470 aa35.56■■■■□ 3.28
SIX4-203ENST00000556952 KIDINS220Q9ULH0 1771 aa35.53■■■■□ 3.28
SIX4-203ENST00000556952 CCDC141Q6ZP82 1450 aa35.53■■■■□ 3.28
SIX4-203ENST00000556952 GCC2Q8IWJ2 1684 aa35.52■■■■□ 3.28
SIX4-203ENST00000556952 HFM1A2PYH4 1435 aa35.52■■■■□ 3.28
SIX4-203ENST00000556952 MLH3Q9UHC1 1453 aa35.52■■■■□ 3.28
SIX4-203ENST00000556952 ROCK1Q13464 1354 aa35.51■■■■□ 3.27
SIX4-203ENST00000556952 RSPH4AQ5TD94 716 aa35.51■■■■□ 3.27
SIX4-203ENST00000556952 ABCA6Q8N139 1617 aa35.51■■■■□ 3.27
SIX4-203ENST00000556952 SIGLEC1Q9BZZ2 1709 aa35.5■■■■□ 3.27
SIX4-203ENST00000556952 SETD5Q9C0A6 1442 aa35.5■■■■□ 3.27
SIX4-203ENST00000556952 DIP2CQ9Y2E4 1556 aa35.49■■■■□ 3.27
SIX4-203ENST00000556952 INO80Q9ULG1 1556 aaPredicted RBP35.48■■■■□ 3.27
SIX4-203ENST00000556952 ADGRL2O95490 1459 aa35.47■■■■□ 3.27
SIX4-203ENST00000556952 MAST1Q9Y2H9 1570 aa35.45■■■■□ 3.26
SIX4-203ENST00000556952 MYT1LQ9UL68 1186 aa35.44■■■■□ 3.26
SIX4-203ENST00000556952 ATP7AQ04656 1500 aa35.44■■■■□ 3.26
SIX4-203ENST00000556952 SPAG9O60271 1321 aaKnown RBP35.43■■■■□ 3.26
SIX4-203ENST00000556952 NAIPQ13075 1403 aa35.43■■■■□ 3.26
SIX4-203ENST00000556952 C9orf84Q5VXU9 1444 aa35.42■■■■□ 3.26
SIX4-203ENST00000556952 RAB3GAP2Q9H2M9 1393 aa35.41■■■■□ 3.26
SIX4-203ENST00000556952 ATP10AO60312 1499 aa35.41■■■■□ 3.26
SIX4-203ENST00000556952 CHIC2Q9UKJ5 165 aa35.4■■■■□ 3.26
SIX4-203ENST00000556952 TSPY4P0CV99 314 aa35.38■■■■□ 3.25
SIX4-203ENST00000556952 TSPY10P0CW01 314 aa35.38■■■■□ 3.25
SIX4-203ENST00000556952 HRCP23327 699 aa35.36■■■■□ 3.25
SIX4-203ENST00000556952 ANKRD30AQ9BXX3 1397 aa35.35■■■■□ 3.25
SIX4-203ENST00000556952 NCOA1Q15788 1441 aa35.35■■■■□ 3.25
SIX4-203ENST00000556952 REREQ9P2R6 1566 aa35.33■■■■□ 3.25
SIX4-203ENST00000556952 PLXNC1O60486 1568 aa35.31■■■■□ 3.24
SIX4-203ENST00000556952 BCORL1Q5H9F3 1711 aa35.31■■■■□ 3.24
SIX4-203ENST00000556952 RRP7BPQ9NSQ0 103 aa35.3■■■■□ 3.24
SIX4-203ENST00000556952 RTEL1-TNFRSF6BF6WH68 1400 aa35.3■■■■□ 3.24
SIX4-203ENST00000556952 KDM4FA0A1W2PPD8 638 aa35.3■■■■□ 3.24
SIX4-203ENST00000556952 ARID4BQ4LE39 1312 aaPredicted RBP35.28■■■■□ 3.24
SIX4-203ENST00000556952 ADAMTSL3P82987 1691 aa35.23■■■■□ 3.23
SIX4-203ENST00000556952 CCER1Q8TC90 406 aaPredicted RBP35.21■■■■□ 3.23
SIX4-203ENST00000556952 A2MP01023 1474 aa35.2■■■■□ 3.23
SIX4-203ENST00000556952 AGLP35573 1532 aa35.19■■■■□ 3.22
SIX4-203ENST00000556952 ACIN1Q9UKV3 1341 aaKnown RBP35.19■■■■□ 3.22
SIX4-203ENST00000556952 KIF15Q9NS87 1388 aa35.18■■■■□ 3.22
SIX4-203ENST00000556952 MADDQ8WXG6 1647 aa35.16■■■■□ 3.22
SIX4-203ENST00000556952 DHX57Q6P158 1386 aaKnown RBP35.15■■■■□ 3.22
SIX4-203ENST00000556952 MLECQ14165 292 aa35.13■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms