RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 ECM2O94769 699 aaPredicted RBP12.84□□□□□ -0.35
PRPF39-210ENST00000556718 NLRP6P59044 892 aa12.82□□□□□ -0.36
PRPF39-210ENST00000556718 MFRPQ9BY79 579 aa12.81□□□□□ -0.36
PRPF39-210ENST00000556718 STK25O00506 426 aa12.8□□□□□ -0.36
PRPF39-210ENST00000556718 PKD2Q13563 968 aa12.8□□□□□ -0.36
PRPF39-210ENST00000556718 ERBB3P21860 1342 aa12.8□□□□□ -0.36
PRPF39-210ENST00000556718 RGL2O15211 777 aa12.78□□□□□ -0.36
PRPF39-210ENST00000556718 TAOK2Q9UL54 1235 aa12.78□□□□□ -0.36
PRPF39-210ENST00000556718 RIMBP2O15034 1052 aa12.77□□□□□ -0.37
PRPF39-210ENST00000556718 GPR153Q6NV75 609 aa12.75□□□□□ -0.37
PRPF39-210ENST00000556718 VARS2Q5ST30 1063 aaKnown RBP12.74□□□□□ -0.37
PRPF39-210ENST00000556718 ZSWIM6Q9HCJ5 1215 aa12.72□□□□□ -0.37
PRPF39-210ENST00000556718 ARSIQ5FYB1 569 aa12.69□□□□□ -0.38
PRPF39-210ENST00000556718 KHSRPQ92945 711 aaKnown RBP eCLIP12.69□□□□□ -0.385e-10■■■□□ 17.8
PRPF39-210ENST00000556718 C2orf72A6NCS6 295 aa12.65□□□□□ -0.38
PRPF39-210ENST00000556718 KIF3CO14782 793 aa12.65□□□□□ -0.38
PRPF39-210ENST00000556718 ZNF687Q8N1G0 1237 aa12.63□□□□□ -0.39
PRPF39-210ENST00000556718 PPP1R37O75864 691 aa12.61□□□□□ -0.39
PRPF39-210ENST00000556718 ZNF316A6NFI3 1004 aaPredicted RBP12.57□□□□□ -0.4
PRPF39-210ENST00000556718 NUDT7P0C024 238 aa12.53□□□□□ -0.4
PRPF39-210ENST00000556718 TMC2Q8TDI7 906 aa12.51□□□□□ -0.41
PRPF39-210ENST00000556718 RNF166Q96A37 237 aaPredicted RBP12.51□□□□□ -0.41
PRPF39-210ENST00000556718 PCDHGA4Q9Y5G9 962 aa12.5□□□□□ -0.41
PRPF39-210ENST00000556718 MYT1LQ9UL68 1186 aa12.48□□□□□ -0.41
PRPF39-210ENST00000556718 SLC34A2O95436 690 aa12.47□□□□□ -0.41
PRPF39-210ENST00000556718 ANKRD13DQ6ZTN6 518 aa12.47□□□□□ -0.41
PRPF39-210ENST00000556718 LHX6Q9UPM6 363 aa12.47□□□□□ -0.41
PRPF39-210ENST00000556718 HS6ST3Q8IZP7 471 aa12.46□□□□□ -0.41
PRPF39-210ENST00000556718 POTEEQ6S8J3 1075 aa12.44□□□□□ -0.42
PRPF39-210ENST00000556718 LSM11P83369 360 aaKnown RBP eCLIP12.42□□□□□ -0.42
PRPF39-210ENST00000556718 CHGAP10645 457 aaKnown RBP12.41□□□□□ -0.42
PRPF39-210ENST00000556718 AXIN2Q9Y2T1 843 aa12.4□□□□□ -0.42
PRPF39-210ENST00000556718 KDM4FA0A1W2PPD8 638 aa12.36□□□□□ -0.43
PRPF39-210ENST00000556718 PTGER2P43116 358 aa12.36□□□□□ -0.43
PRPF39-210ENST00000556718 FOXK1P85037 733 aa12.36□□□□□ -0.43
PRPF39-210ENST00000556718 NKX1-1Q15270 411 aaPredicted RBP12.36□□□□□ -0.43
PRPF39-210ENST00000556718 PLPP6Q8IY26 295 aa12.36□□□□□ -0.43
PRPF39-210ENST00000556718 PTCD2Q8WV60 388 aaKnown RBP12.35□□□□□ -0.43
PRPF39-210ENST00000556718 GPHNQ9NQX3 736 aaPredicted RBP12.35□□□□□ -0.43
PRPF39-210ENST00000556718 PBX2P40425 430 aa12.34□□□□□ -0.43
PRPF39-210ENST00000556718 DSG2Q14126 1118 aa12.34□□□□□ -0.43
PRPF39-210ENST00000556718 DNAJC5Q9H3Z4 198 aa12.28□□□□□ -0.44
PRPF39-210ENST00000556718 ARHGAP33O14559 1287 aa12.25□□□□□ -0.45
PRPF39-210ENST00000556718 PSDA5PKW4 1024 aaPredicted RBP12.24□□□□□ -0.45
PRPF39-210ENST00000556718 PSEN2P49810 448 aa12.24□□□□□ -0.45
PRPF39-210ENST00000556718 DMRTA1Q5VZB9 504 aa12.24□□□□□ -0.45
PRPF39-210ENST00000556718 ADGRD1Q6QNK2 874 aa12.23□□□□□ -0.45
PRPF39-210ENST00000556718 UPF1Q92900 1129 aaKnown RBP eCLIP12.2□□□□□ -0.46
PRPF39-210ENST00000556718 CRISPLD2Q9H0B8 497 aa12.2□□□□□ -0.46
PRPF39-210ENST00000556718 TBC1D12O60347 775 aa12.19□□□□□ -0.46
PRPF39-210ENST00000556718 PPP4R3BQ5MIZ7 849 aa12.18□□□□□ -0.46
PRPF39-210ENST00000556718 OXER1Q8TDS5 423 aa12.18□□□□□ -0.46
PRPF39-210ENST00000556718 NCKAP5LQ9HCH0 1330 aa12.16□□□□□ -0.46
PRPF39-210ENST00000556718 HRO43593 1189 aa12.15□□□□□ -0.46
PRPF39-210ENST00000556718 PPP1R15BQ5SWA1 713 aa12.15□□□□□ -0.46
PRPF39-210ENST00000556718 RYDENQ9NUL5 291 aaKnown RBP12.15□□□□□ -0.46
PRPF39-210ENST00000556718 GTPBP6O43824 516 aaPredicted RBP12.14□□□□□ -0.47
PRPF39-210ENST00000556718 TK2O00142 265 aa12.13□□□□□ -0.47
PRPF39-210ENST00000556718 KCNK17Q96T54 332 aa12.13□□□□□ -0.47
PRPF39-210ENST00000556718 ZNF454Q8N9F8 522 aa12.09□□□□□ -0.47
PRPF39-210ENST00000556718 PDE4AP27815 886 aa12.08□□□□□ -0.48
PRPF39-210ENST00000556718 HCSTQ9UBK5 93 aa12.08□□□□□ -0.48
PRPF39-210ENST00000556718 LARP6Q9BRS8 491 aaKnown RBP12.06□□□□□ -0.48
PRPF39-210ENST00000556718 PLA2G2EQ9NZK7 142 aa12.05□□□□□ -0.48
PRPF39-210ENST00000556718 FOSBP53539 338 aa12.04□□□□□ -0.48
PRPF39-210ENST00000556718 KCTD12Q96CX2 325 aaKnown RBP12.04□□□□□ -0.48
PRPF39-210ENST00000556718 VPS9D1Q9Y2B5 631 aa12.04□□□□□ -0.48
PRPF39-210ENST00000556718 DCAF8L2P0C7V8 631 aa12.03□□□□□ -0.48
PRPF39-210ENST00000556718 KCNH8Q96L42 1107 aa12.02□□□□□ -0.49
PRPF39-210ENST00000556718 BCL2L12Q9HB09 334 aa12.02□□□□□ -0.49
PRPF39-210ENST00000556718 EVI5O60447 810 aa12.01□□□□□ -0.49
PRPF39-210ENST00000556718 ANO8Q9HCE9 1232 aaPredicted RBP12.01□□□□□ -0.49
PRPF39-210ENST00000556718 DDX27Q96GQ7 796 aaKnown RBP12□□□□□ -0.49
PRPF39-210ENST00000556718 MFSD10Q14728 455 aa11.99□□□□□ -0.49
PRPF39-210ENST00000556718 CADPS2Q86UW7 1296 aa11.99□□□□□ -0.49
PRPF39-210ENST00000556718 STAC3Q96MF2 364 aa11.99□□□□□ -0.49
PRPF39-210ENST00000556718 JPH4Q96JJ6 628 aa11.97□□□□□ -0.49
PRPF39-210ENST00000556718 EMILIN3Q9NT22 766 aa11.97□□□□□ -0.49
PRPF39-210ENST00000556718 PTPREP23469 700 aa11.96□□□□□ -0.49
PRPF39-210ENST00000556718 ADAM33Q9BZ11 813 aa11.96□□□□□ -0.49
PRPF39-210ENST00000556718 SLC4A5Q9BY07 1137 aa11.95□□□□□ -0.5
PRPF39-210ENST00000556718 MAP3K9P80192 1104 aa11.94□□□□□ -0.5
PRPF39-210ENST00000556718 ZBED2Q9BTP6 218 aa11.94□□□□□ -0.5
PRPF39-210ENST00000556718 BHMG1C9JSJ3 638 aaPredicted RBP11.93□□□□□ -0.5
PRPF39-210ENST00000556718 ZDHHC16Q969W1 377 aa11.93□□□□□ -0.5
PRPF39-210ENST00000556718 PTPN5P54829 565 aa11.92□□□□□ -0.5
PRPF39-210ENST00000556718 PCDHGA10Q9Y5H3 936 aa11.88□□□□□ -0.51
PRPF39-210ENST00000556718 THSD4Q6ZMP0 1018 aa11.86□□□□□ -0.51
PRPF39-210ENST00000556718 MRPL50Q8N5N7 158 aaKnown RBP11.84□□□□□ -0.51
PRPF39-210ENST00000556718 COL9A1P20849 921 aa11.83□□□□□ -0.52
PRPF39-210ENST00000556718 PROX2Q3B8N5 592 aa11.83□□□□□ -0.52
PRPF39-210ENST00000556718 WNT2BQ93097 391 aa11.83□□□□□ -0.52
PRPF39-210ENST00000556718 GOLGA8CPA6NN73 597 aa11.82□□□□□ -0.52
PRPF39-210ENST00000556718 PPP1R3GB7ZBB8 358 aa11.81□□□□□ -0.52
PRPF39-210ENST00000556718 DPYSL4O14531 572 aa11.79□□□□□ -0.52
PRPF39-210ENST00000556718 CAMK2BQ13554 666 aa11.79□□□□□ -0.52
PRPF39-210ENST00000556718 TYW1BQ6NUM6 668 aa11.79□□□□□ -0.52
PRPF39-210ENST00000556718 PHF14O94880 888 aa11.78□□□□□ -0.52
PRPF39-210ENST00000556718 NBPF3Q9H094 633 aa11.78□□□□□ -0.52
PRPF39-210ENST00000556718 FBXW7Q969H0 707 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms