RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 CRISPLD2Q9H0B8 497 aa9.56□□□□□ -0.88
TDP1-215ENST00000556498 LARP6Q9BRS8 491 aaKnown RBP9.55□□□□□ -0.88
TDP1-215ENST00000556498 HRCP23327 699 aa9.54□□□□□ -0.88
TDP1-215ENST00000556498 KCNV2Q8TDN2 545 aa9.54□□□□□ -0.88
TDP1-215ENST00000556498 MFSD10Q14728 455 aa9.53□□□□□ -0.88
TDP1-215ENST00000556498 UBE2Q2Q8WVN8 375 aa9.53□□□□□ -0.88
TDP1-215ENST00000556498 E2F4Q16254 413 aa9.52□□□□□ -0.89
TDP1-215ENST00000556498 MICALL2Q8IY33 904 aa9.52□□□□□ -0.89
TDP1-215ENST00000556498 SP7Q8TDD2 431 aaPredicted RBP9.52□□□□□ -0.89
TDP1-215ENST00000556498 PLCG2P16885 1265 aa9.51□□□□□ -0.89
TDP1-215ENST00000556498 TMEM121BQ9BXQ6 578 aaPredicted RBP9.51□□□□□ -0.89
TDP1-215ENST00000556498 POTEIP0CG38 1075 aa9.49□□□□□ -0.89
TDP1-215ENST00000556498 SLC39A7Q92504 469 aa9.49□□□□□ -0.89
TDP1-215ENST00000556498 DDX27Q96GQ7 796 aaKnown RBP9.49□□□□□ -0.89
TDP1-215ENST00000556498 GPHNQ9NQX3 736 aaPredicted RBP9.49□□□□□ -0.89
TDP1-215ENST00000556498 TIMELESSQ9UNS1 1208 aa9.49□□□□□ -0.89
TDP1-215ENST00000556498 COLQQ9Y215 455 aaPredicted RBP9.49□□□□□ -0.89
TDP1-215ENST00000556498 BOLA1Q9Y3E2 137 aa9.49□□□□□ -0.89
TDP1-215ENST00000556498 SEC24BO95487 1268 aa9.48□□□□□ -0.89
TDP1-215ENST00000556498 C7P10643 843 aa9.48□□□□□ -0.89
TDP1-215ENST00000556498 ARHGEF1Q92888 912 aaKnown RBP9.48□□□□□ -0.89
TDP1-215ENST00000556498 L3MBTL3Q96JM7 780 aaPredicted RBP9.47□□□□□ -0.89
TDP1-215ENST00000556498 PODXL2Q9NZ53 605 aa9.46□□□□□ -0.9
TDP1-215ENST00000556498 POTEFA5A3E0 1075 aa9.45□□□□□ -0.9
TDP1-215ENST00000556498 G3V3G9 751 aa9.45□□□□□ -0.9
TDP1-215ENST00000556498 CAMK2BQ13554 666 aa9.44□□□□□ -0.9
TDP1-215ENST00000556498 PPP1R15BQ5SWA1 713 aa9.43□□□□□ -0.9
TDP1-215ENST00000556498 METRNQ9UJH8 293 aa9.43□□□□□ -0.9
TDP1-215ENST00000556498 TPRNQ4KMQ1 711 aa9.42□□□□□ -0.9
TDP1-215ENST00000556498 TMC2Q8TDI7 906 aa9.42□□□□□ -0.9
TDP1-215ENST00000556498 ARIH1Q9Y4X5 557 aaPredicted RBP9.42□□□□□ -0.9
TDP1-215ENST00000556498 DSG2Q14126 1118 aa9.41□□□□□ -0.9
TDP1-215ENST00000556498 KIF3CO14782 793 aa9.4□□□□□ -0.9
TDP1-215ENST00000556498 FOXK1P85037 733 aa9.4□□□□□ -0.9
TDP1-215ENST00000556498 C2orf72A6NCS6 295 aa9.39□□□□□ -0.91
TDP1-215ENST00000556498 NISCHQ9Y2I1 1504 aa9.37□□□□□ -0.91
TDP1-215ENST00000556498 TULP1O00294 542 aaPredicted RBP9.36□□□□□ -0.91
TDP1-215ENST00000556498 TMEM92Q6UXU6 159 aa9.36□□□□□ -0.91
TDP1-215ENST00000556498 SEMA3EO15041 775 aa9.35□□□□□ -0.91
TDP1-215ENST00000556498 PLPP6Q8IY26 295 aa9.35□□□□□ -0.91
TDP1-215ENST00000556498 NEFLP07196 543 aa9.34□□□□□ -0.91
TDP1-215ENST00000556498 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.34□□□□□ -0.91
TDP1-215ENST00000556498 EMILIN3Q9NT22 766 aa9.34□□□□□ -0.91
TDP1-215ENST00000556498 TESPA1A2RU30 521 aaPredicted RBP9.33□□□□□ -0.92
TDP1-215ENST00000556498 C3orf67Q6ZVT6 689 aa9.31□□□□□ -0.92
TDP1-215ENST00000556498 ANP32EQ9BTT0 268 aa9.31□□□□□ -0.92
TDP1-215ENST00000556498 DPYSL4O14531 572 aa9.29□□□□□ -0.92
TDP1-215ENST00000556498 LMOD2Q6P5Q4 547 aa9.29□□□□□ -0.92
TDP1-215ENST00000556498 SPDYE16A6NNV3 312 aaPredicted RBP9.27□□□□□ -0.93
TDP1-215ENST00000556498 SMYD5Q6GMV2 418 aa9.26□□□□□ -0.93
TDP1-215ENST00000556498 PDIA4P13667 645 aaKnown RBP9.25□□□□□ -0.93
TDP1-215ENST00000556498 PDIA6Q15084 440 aa9.25□□□□□ -0.93
TDP1-215ENST00000556498 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.25□□□□□ -0.93
TDP1-215ENST00000556498 MAP3K9P80192 1104 aa9.24□□□□□ -0.93
TDP1-215ENST00000556498 NPM2Q86SE8 214 aaKnown RBP9.24□□□□□ -0.93
TDP1-215ENST00000556498 OXER1Q8TDS5 423 aa9.24□□□□□ -0.93
TDP1-215ENST00000556498 PKNOX2Q96KN3 472 aa9.24□□□□□ -0.93
TDP1-215ENST00000556498 POTEJP0CG39 1038 aa9.22□□□□□ -0.93
TDP1-215ENST00000556498 MLLT3P42568 568 aaPredicted RBP9.22□□□□□ -0.93
TDP1-215ENST00000556498 UPF1Q92900 1129 aaKnown RBP eCLIP9.22□□□□□ -0.93
TDP1-215ENST00000556498 POTEB2H3BUK9 544 aa9.2□□□□□ -0.94
TDP1-215ENST00000556498 SLC34A2O95436 690 aa9.2□□□□□ -0.94
TDP1-215ENST00000556498 PTCD2Q8WV60 388 aaKnown RBP9.2□□□□□ -0.94
TDP1-215ENST00000556498 ZC3H15Q8WU90 426 aaKnown RBP9.18□□□□□ -0.94
TDP1-215ENST00000556498 TBC1D12O60347 775 aa9.17□□□□□ -0.94
TDP1-215ENST00000556498 ERICH6BQ5W0A0 696 aa9.17□□□□□ -0.94
TDP1-215ENST00000556498 PDE4CQ08493 712 aa9.16□□□□□ -0.94
TDP1-215ENST00000556498 PTGER2P43116 358 aa9.15□□□□□ -0.94
TDP1-215ENST00000556498 RBM26Q5T8P6 1007 aaKnown RBP9.15□□□□□ -0.94
TDP1-215ENST00000556498 MYT1LQ9UL68 1186 aa9.15□□□□□ -0.94
TDP1-215ENST00000556498 EVI5O60447 810 aa9.14□□□□□ -0.95
TDP1-215ENST00000556498 CDK11AQ9UQ88 783 aaPredicted RBP9.14□□□□□ -0.95
TDP1-215ENST00000556498 TAF7LQ5H9L4 462 aa9.13□□□□□ -0.95
TDP1-215ENST00000556498 ANO8Q9HCE9 1232 aaPredicted RBP9.13□□□□□ -0.95
TDP1-215ENST00000556498 GRXCR2A6NFK2 248 aa9.12□□□□□ -0.95
TDP1-215ENST00000556498 MAMSTRQ6ZN01 415 aa9.12□□□□□ -0.95
TDP1-215ENST00000556498 SCUBE2Q9NQ36 999 aa9.11□□□□□ -0.95
TDP1-215ENST00000556498 ZMYND10O75800 440 aa9.1□□□□□ -0.95
TDP1-215ENST00000556498 OSBPP22059 807 aa9.1□□□□□ -0.95
TDP1-215ENST00000556498 SLAIN1Q8ND83 568 aa9.1□□□□□ -0.95
TDP1-215ENST00000556498 PCDHGA4Q9Y5G9 962 aa9.1□□□□□ -0.95
TDP1-215ENST00000556498 GPIHBP1Q8IV16 184 aa9.09□□□□□ -0.95
TDP1-215ENST00000556498 DDX12PQ92771 950 aa9.09□□□□□ -0.95
TDP1-215ENST00000556498 GTF3C3Q9Y5Q9 886 aa9.09□□□□□ -0.95
TDP1-215ENST00000556498 ACIN1Q9UKV3 1341 aaKnown RBP9.08□□□□□ -0.96
TDP1-215ENST00000556498 ZNF316A6NFI3 1004 aaPredicted RBP9.08□□□□□ -0.96
TDP1-215ENST00000556498 C14orf37Q86TY3 774 aa9.08□□□□□ -0.96
TDP1-215ENST00000556498 KDM4FA0A1W2PPD8 638 aa9.07□□□□□ -0.96
TDP1-215ENST00000556498 BARGINQ6ZT62 677 aa9.07□□□□□ -0.96
TDP1-215ENST00000556498 HOXB3P14651 431 aaPredicted RBP9.06□□□□□ -0.96
TDP1-215ENST00000556498 DOK7Q18PE1 504 aa9.06□□□□□ -0.96
TDP1-215ENST00000556498 ZNF326Q5BKZ1 582 aaKnown RBP9.05□□□□□ -0.96
TDP1-215ENST00000556498 SLC24A3Q9HC58 644 aa9.04□□□□□ -0.96
TDP1-215ENST00000556498 BRD2P25440 801 aaKnown RBP9.03□□□□□ -0.96
TDP1-215ENST00000556498 PRIM1P49642 420 aaKnown RBP9.03□□□□□ -0.96
TDP1-215ENST00000556498 NUTM2FA1L443 756 aa9.02□□□□□ -0.97
TDP1-215ENST00000556498 GPR37O15354 613 aa9.02□□□□□ -0.97
TDP1-215ENST00000556498 PHF14O94880 888 aa9.02□□□□□ -0.97
TDP1-215ENST00000556498 ZEB1P37275 1124 aaPredicted RBP9.02□□□□□ -0.97
TDP1-215ENST00000556498 EPAS1Q99814 870 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms