RNA–Protein interactions for RNA: ENST00000556303.1

SNX6-207, Transcript of sorting nexin 6, humanhuman

TSL 2

Gene SNX6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-207ENST00000556303 ARHGEF40Q8TER5 1519 aa20.29■□□□□ 0.84
SNX6-207ENST00000556303 ARHGAP5Q13017 1502 aa20.27■□□□□ 0.83
SNX6-207ENST00000556303 ARID4BQ4LE39 1312 aaPredicted RBP20.27■□□□□ 0.83
SNX6-207ENST00000556303 ZFYVE16Q7Z3T8 1539 aa20.25■□□□□ 0.83
SNX6-207ENST00000556303 ADAMTSL3P82987 1691 aa20.25■□□□□ 0.83
SNX6-207ENST00000556303 ZNF518AQ6AHZ1 1483 aa20.24■□□□□ 0.83
SNX6-207ENST00000556303 CEP162Q5TB80 1403 aa20.23■□□□□ 0.83
SNX6-207ENST00000556303 BCORL1Q5H9F3 1711 aa20.22■□□□□ 0.83
SNX6-207ENST00000556303 YEATS2Q9ULM3 1422 aa20.21■□□□□ 0.83
SNX6-207ENST00000556303 CDC42BPBQ9Y5S2 1711 aa20.2■□□□□ 0.82
SNX6-207ENST00000556303 PREX2Q70Z35 1606 aa20.2■□□□□ 0.82
SNX6-207ENST00000556303 ATP10AO60312 1499 aa20.19■□□□□ 0.82
SNX6-207ENST00000556303 PTPRMP28827 1452 aa20.19■□□□□ 0.82
SNX6-207ENST00000556303 AFAP1Q8N556 730 aa20.18■□□□□ 0.82
SNX6-207ENST00000556303 KDM5CP41229 1560 aa20.17■□□□□ 0.82
SNX6-207ENST00000556303 MTUS2Q5JR59 1369 aa20.16■□□□□ 0.82
SNX6-207ENST00000556303 C9orf84Q5VXU9 1444 aa20.16■□□□□ 0.82
SNX6-207ENST00000556303 MLH3Q9UHC1 1453 aa20.15■□□□□ 0.82
SNX6-207ENST00000556303 GPATCH8Q9UKJ3 1502 aaKnown RBP20.14■□□□□ 0.81
SNX6-207ENST00000556303 CDC42BPAQ5VT25 1732 aa20.13■□□□□ 0.81
SNX6-207ENST00000556303 ABCC1P33527 1531 aa20.13■□□□□ 0.81
SNX6-207ENST00000556303 HECW2Q9P2P5 1572 aa20.12■□□□□ 0.81
SNX6-207ENST00000556303 MADDQ8WXG6 1647 aa20.12■□□□□ 0.81
SNX6-207ENST00000556303 CCNB3Q8WWL7 1395 aa20.11■□□□□ 0.81
SNX6-207ENST00000556303 KIAA1107Q9UPP5 1409 aa20.1■□□□□ 0.81
SNX6-207ENST00000556303 CFDP1Q9UEE9 299 aaPredicted RBP20.1■□□□□ 0.81
SNX6-207ENST00000556303 MYT1LQ9UL68 1186 aa20.1■□□□□ 0.81
SNX6-207ENST00000556303 ARHGEF12Q9NZN5 1544 aa20.1■□□□□ 0.81
SNX6-207ENST00000556303 PLEKHH2Q8IVE3 1493 aa20.1■□□□□ 0.81
SNX6-207ENST00000556303 TRAPPC8Q9Y2L5 1435 aa20.1■□□□□ 0.81
SNX6-207ENST00000556303 LOC105371045A0A1W2PR82 267 aa20.09■□□□□ 0.81
SNX6-207ENST00000556303 REREQ9P2R6 1566 aa20.08■□□□□ 0.81
SNX6-207ENST00000556303 EHBP1L1Q8N3D4 1523 aa20.08■□□□□ 0.81
SNX6-207ENST00000556303 ITSN2Q9NZM3 1697 aa20.07■□□□□ 0.8
SNX6-207ENST00000556303 ZNF777Q9ULD5 760 aaPredicted RBP20.07■□□□□ 0.8
SNX6-207ENST00000556303 SIGLEC1Q9BZZ2 1709 aa20.06■□□□□ 0.8
SNX6-207ENST00000556303 DIP2CQ9Y2E4 1556 aa20.04■□□□□ 0.8
SNX6-207ENST00000556303 VPS8Q8N3P4 1428 aa20.04■□□□□ 0.8
SNX6-207ENST00000556303 MLECQ14165 292 aa20.04■□□□□ 0.8
SNX6-207ENST00000556303 SAMD9LQ8IVG5 1584 aa20.04■□□□□ 0.8
SNX6-207ENST00000556303 RIMS1Q86UR5 1692 aaKnown RBP20.03■□□□□ 0.8
SNX6-207ENST00000556303 AGLP35573 1532 aa20.03■□□□□ 0.8
SNX6-207ENST00000556303 SPAG9O60271 1321 aaKnown RBP20.02■□□□□ 0.79
SNX6-207ENST00000556303 HNRNPMP52272 730 aaKnown RBP eCLIP20.01■□□□□ 0.79
SNX6-207ENST00000556303 SYCP2Q9BX26 1530 aa20.01■□□□□ 0.79
SNX6-207ENST00000556303 KIDINS220Q9ULH0 1771 aa20■□□□□ 0.79
SNX6-207ENST00000556303 ABCA6Q8N139 1617 aa19.99■□□□□ 0.79
SNX6-207ENST00000556303 FER1L4A9Z1Z3 1794 aa19.99■□□□□ 0.79
SNX6-207ENST00000556303 RSPH4AQ5TD94 716 aa19.98■□□□□ 0.79
SNX6-207ENST00000556303 TIAM1Q13009 1591 aa19.98■□□□□ 0.79
SNX6-207ENST00000556303 MAP3K1Q13233 1512 aa19.97■□□□□ 0.79
SNX6-207ENST00000556303 LMTK3Q96Q04 1460 aa19.96■□□□□ 0.79
SNX6-207ENST00000556303 NCOA2Q15596 1464 aa19.95■□□□□ 0.78
SNX6-207ENST00000556303 SUPT6HQ7KZ85 1726 aaKnown RBP19.95■□□□□ 0.78
SNX6-207ENST00000556303 ESF1Q9H501 851 aaKnown RBP19.94■□□□□ 0.78
SNX6-207ENST00000556303 SETD1BQ9UPS6 1966 aaKnown RBP19.94■□□□□ 0.78
SNX6-207ENST00000556303 MBD5Q9P267 1494 aa19.93■□□□□ 0.78
SNX6-207ENST00000556303 RTEL1-TNFRSF6BF6WH68 1400 aa19.93■□□□□ 0.78
SNX6-207ENST00000556303 LRRC9Q6ZRR7 1453 aa19.92■□□□□ 0.78
SNX6-207ENST00000556303 ATP7AQ04656 1500 aa19.92■□□□□ 0.78
SNX6-207ENST00000556303 ZNF644Q9H582 1327 aaPredicted RBP19.92■□□□□ 0.78
SNX6-207ENST00000556303 CNTLNQ9NXG0 1405 aa19.92■□□□□ 0.78
SNX6-207ENST00000556303 INO80Q9ULG1 1556 aaPredicted RBP19.9■□□□□ 0.78
SNX6-207ENST00000556303 PLPPR3Q6T4P5 718 aa19.89■□□□□ 0.77
SNX6-207ENST00000556303 PPP6R1Q9UPN7 881 aa19.89■□□□□ 0.77
SNX6-207ENST00000556303 A2MP01023 1474 aa19.88■□□□□ 0.77
SNX6-207ENST00000556303 CEBPAP49715 358 aaPredicted RBP19.87■□□□□ 0.77
SNX6-207ENST00000556303 APLP2Q06481 763 aa19.85■□□□□ 0.77
SNX6-207ENST00000556303 PLXNC1O60486 1568 aa19.85■□□□□ 0.77
SNX6-207ENST00000556303 CCDC141Q6ZP82 1450 aa19.85■□□□□ 0.77
SNX6-207ENST00000556303 CAMSAP2Q08AD1 1489 aa19.84■□□□□ 0.77
SNX6-207ENST00000556303 TSPY4P0CV99 314 aa19.83■□□□□ 0.77
SNX6-207ENST00000556303 TSPY10P0CW01 314 aa19.83■□□□□ 0.77
SNX6-207ENST00000556303 KANK4Q5T7N3 995 aaPredicted RBP19.83■□□□□ 0.77
SNX6-207ENST00000556303 MIA2Q96PC5 1412 aa19.83■□□□□ 0.76
SNX6-207ENST00000556303 DHX29Q7Z478 1369 aaKnown RBP19.83■□□□□ 0.76
SNX6-207ENST00000556303 ADGBQ8N7X0 1667 aa19.82■□□□□ 0.76
SNX6-207ENST00000556303 PREX1Q8TCU6 1659 aa19.81■□□□□ 0.76
SNX6-207ENST00000556303 HSPA2P54652 639 aa19.81■□□□□ 0.76
SNX6-207ENST00000556303 UHRF1BP1Q6BDS2 1440 aa19.81■□□□□ 0.76
SNX6-207ENST00000556303 ARHGEF5Q12774 1597 aa19.8■□□□□ 0.76
SNX6-207ENST00000556303 C3P01024 1663 aa19.79■□□□□ 0.76
SNX6-207ENST00000556303 ZMYM3Q14202 1370 aa19.79■□□□□ 0.76
SNX6-207ENST00000556303 MROH2AA6NES4 1674 aa19.78■□□□□ 0.76
SNX6-207ENST00000556303 NPATQ14207 1427 aa19.78■□□□□ 0.76
SNX6-207ENST00000556303 MYOM3Q5VTT5 1437 aa19.77■□□□□ 0.76
SNX6-207ENST00000556303 GGT6Q6P531 493 aa19.77■□□□□ 0.76
SNX6-207ENST00000556303 DMRT2Q9Y5R5 561 aa19.76■□□□□ 0.75
SNX6-207ENST00000556303 ILDR1Q86SU0 546 aaPredicted RBP19.75■□□□□ 0.75
SNX6-207ENST00000556303 FAM135AQ9P2D6 1515 aa19.72■□□□□ 0.75
SNX6-207ENST00000556303 KIF3BO15066 747 aa19.71■□□□□ 0.75
SNX6-207ENST00000556303 SENP3Q9H4L4 574 aaPredicted RBP19.71■□□□□ 0.75
SNX6-207ENST00000556303 MAST1Q9Y2H9 1570 aa19.7■□□□□ 0.74
SNX6-207ENST00000556303 CLTCQ00610 1675 aaKnown RBP19.68■□□□□ 0.74
SNX6-207ENST00000556303 PTPRKQ15262 1439 aa19.67■□□□□ 0.74
SNX6-207ENST00000556303 FBXO41Q8TF61 875 aa19.66■□□□□ 0.74
SNX6-207ENST00000556303 WASHC2CQ9Y4E1 1318 aa19.65■□□□□ 0.74
SNX6-207ENST00000556303 PTPRTO14522 1441 aa19.63■□□□□ 0.73
SNX6-207ENST00000556303 STRCQ7RTU9 1775 aa19.62■□□□□ 0.73
SNX6-207ENST00000556303 KDM5DQ9BY66 1539 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms