RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 HECW1Q76N89 1606 aa10.47□□□□□ -0.73
TMEM260-209ENST00000556079 KIF14Q15058 1648 aa10.47□□□□□ -0.73
TMEM260-209ENST00000556079 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.46□□□□□ -0.74
TMEM260-209ENST00000556079 FRMPD1Q5SYB0 1578 aa10.45□□□□□ -0.74
TMEM260-209ENST00000556079 CLIP1P30622 1438 aa10.43□□□□□ -0.74
TMEM260-209ENST00000556079 FMN1Q68DA7 1419 aa10.43□□□□□ -0.74
TMEM260-209ENST00000556079 LOC105371045A0A1W2PR82 267 aa10.43□□□□□ -0.74
TMEM260-209ENST00000556079 RAPGEF3O95398 923 aa10.42□□□□□ -0.74
TMEM260-209ENST00000556079 SLC4A1APQ9BWU0 796 aaKnown RBP10.41□□□□□ -0.74
TMEM260-209ENST00000556079 ARAP3Q8WWN8 1544 aa10.41□□□□□ -0.74
TMEM260-209ENST00000556079 PLEKHD1A6NEE1 506 aa10.4□□□□□ -0.74
TMEM260-209ENST00000556079 CASKIN1Q8WXD9 1431 aa10.4□□□□□ -0.75
TMEM260-209ENST00000556079 CEP162Q5TB80 1403 aa10.39□□□□□ -0.75
TMEM260-209ENST00000556079 RICTORQ6R327 1708 aa10.38□□□□□ -0.75
TMEM260-209ENST00000556079 SIGLEC1Q9BZZ2 1709 aa10.38□□□□□ -0.75
TMEM260-209ENST00000556079 PTPRMP28827 1452 aa10.38□□□□□ -0.75
TMEM260-209ENST00000556079 MYO5CQ9NQX4 1742 aa10.38□□□□□ -0.75
TMEM260-209ENST00000556079 FANCAO15360 1455 aa10.37□□□□□ -0.75
TMEM260-209ENST00000556079 NEO1Q92859 1461 aa10.36□□□□□ -0.75
TMEM260-209ENST00000556079 FYCO1Q9BQS8 1478 aa10.36□□□□□ -0.75
TMEM260-209ENST00000556079 CDC42BPBQ9Y5S2 1711 aa10.36□□□□□ -0.75
TMEM260-209ENST00000556079 TROQ12816 1431 aaPredicted RBP10.36□□□□□ -0.75
TMEM260-209ENST00000556079 AKNAQ7Z591 1439 aa10.36□□□□□ -0.75
TMEM260-209ENST00000556079 ADAMTSL3P82987 1691 aa10.36□□□□□ -0.75
TMEM260-209ENST00000556079 ARID4BQ4LE39 1312 aaPredicted RBP10.35□□□□□ -0.75
TMEM260-209ENST00000556079 FBXO41Q8TF61 875 aa10.35□□□□□ -0.75
TMEM260-209ENST00000556079 PHLDB1Q86UU1 1377 aa10.34□□□□□ -0.75
TMEM260-209ENST00000556079 YEATS2Q9ULM3 1422 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 CDC42BPAQ5VT25 1732 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 CAPN15O75808 1086 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 SPINK5Q9NQ38 1064 aaPredicted RBP10.33□□□□□ -0.76
TMEM260-209ENST00000556079 CCDC18Q5T9S5 1454 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 CFAP74Q9C0B2 1584 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 PREX2Q70Z35 1606 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 MADDQ8WXG6 1647 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 ARHGAP5Q13017 1502 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 ARHGEF40Q8TER5 1519 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 PLCH2O75038 1416 aa10.33□□□□□ -0.76
TMEM260-209ENST00000556079 DENND4BO75064 1496 aaPredicted RBP10.32□□□□□ -0.76
TMEM260-209ENST00000556079 BCORL1Q5H9F3 1711 aa10.32□□□□□ -0.76
TMEM260-209ENST00000556079 ARHGEF12Q9NZN5 1544 aa10.31□□□□□ -0.76
TMEM260-209ENST00000556079 SCAPERQ9BY12 1400 aa10.31□□□□□ -0.76
TMEM260-209ENST00000556079 LMTK3Q96Q04 1460 aa10.3□□□□□ -0.76
TMEM260-209ENST00000556079 HSPA2P54652 639 aa10.3□□□□□ -0.76
TMEM260-209ENST00000556079 POGZQ7Z3K3 1410 aa10.3□□□□□ -0.76
TMEM260-209ENST00000556079 ZMYM4Q5VZL5 1548 aa10.29□□□□□ -0.76
TMEM260-209ENST00000556079 ITSN2Q9NZM3 1697 aa10.29□□□□□ -0.76
TMEM260-209ENST00000556079 ZFYVE16Q7Z3T8 1539 aa10.28□□□□□ -0.76
TMEM260-209ENST00000556079 SAMD9LQ8IVG5 1584 aa10.28□□□□□ -0.76
TMEM260-209ENST00000556079 RIMS1Q86UR5 1692 aaKnown RBP10.28□□□□□ -0.76
TMEM260-209ENST00000556079 ABCC1P33527 1531 aa10.28□□□□□ -0.76
TMEM260-209ENST00000556079 TRAPPC8Q9Y2L5 1435 aa10.27□□□□□ -0.77
TMEM260-209ENST00000556079 MLECQ14165 292 aa10.27□□□□□ -0.77
TMEM260-209ENST00000556079 CDK11AQ9UQ88 783 aaPredicted RBP10.27□□□□□ -0.77
TMEM260-209ENST00000556079 AFAP1Q8N556 730 aa10.26□□□□□ -0.77
TMEM260-209ENST00000556079 TIAM1Q13009 1591 aa10.26□□□□□ -0.77
TMEM260-209ENST00000556079 ABCA6Q8N139 1617 aa10.25□□□□□ -0.77
TMEM260-209ENST00000556079 SYCP2Q9BX26 1530 aa10.25□□□□□ -0.77
TMEM260-209ENST00000556079 GPATCH8Q9UKJ3 1502 aaKnown RBP10.25□□□□□ -0.77
TMEM260-209ENST00000556079 EFCAB2Q5VUJ9 269 aa10.25□□□□□ -0.77
TMEM260-209ENST00000556079 ZNF777Q9ULD5 760 aaPredicted RBP10.25□□□□□ -0.77
TMEM260-209ENST00000556079 KDM5CP41229 1560 aa10.24□□□□□ -0.77
TMEM260-209ENST00000556079 DIP2CQ9Y2E4 1556 aa10.24□□□□□ -0.77
TMEM260-209ENST00000556079 MTUS2Q5JR59 1369 aa10.24□□□□□ -0.77
TMEM260-209ENST00000556079 EHBP1L1Q8N3D4 1523 aa10.23□□□□□ -0.77
TMEM260-209ENST00000556079 ZNF644Q9H582 1327 aaPredicted RBP10.23□□□□□ -0.77
TMEM260-209ENST00000556079 VPS8Q8N3P4 1428 aa10.23□□□□□ -0.77
TMEM260-209ENST00000556079 KIDINS220Q9ULH0 1771 aa10.22□□□□□ -0.77
TMEM260-209ENST00000556079 HNRNPMP52272 730 aaKnown RBP eCLIP10.21□□□□□ -0.77
TMEM260-209ENST00000556079 KANK4Q5T7N3 995 aaPredicted RBP10.21□□□□□ -0.77
TMEM260-209ENST00000556079 ZNF518AQ6AHZ1 1483 aa10.21□□□□□ -0.78
TMEM260-209ENST00000556079 FER1L4A9Z1Z3 1794 aa10.21□□□□□ -0.78
TMEM260-209ENST00000556079 APLP2Q06481 763 aa10.2□□□□□ -0.78
TMEM260-209ENST00000556079 NCOA2Q15596 1464 aa10.2□□□□□ -0.78
TMEM260-209ENST00000556079 CCNB3Q8WWL7 1395 aa10.2□□□□□ -0.78
TMEM260-209ENST00000556079 SUPT6HQ7KZ85 1726 aaKnown RBP10.19□□□□□ -0.78
TMEM260-209ENST00000556079 ATP10AO60312 1499 aa10.19□□□□□ -0.78
TMEM260-209ENST00000556079 MYCNP04198 464 aaPredicted RBP10.19□□□□□ -0.78
TMEM260-209ENST00000556079 CEBPAP49715 358 aaPredicted RBP10.19□□□□□ -0.78
TMEM260-209ENST00000556079 CERKQ8TCT0 537 aa10.19□□□□□ -0.78
TMEM260-209ENST00000556079 MAGI2Q86UL8 1455 aa10.18□□□□□ -0.78
TMEM260-209ENST00000556079 C9orf84Q5VXU9 1444 aa10.18□□□□□ -0.78
TMEM260-209ENST00000556079 SAMD1Q6SPF0 538 aaPredicted RBP10.18□□□□□ -0.78
TMEM260-209ENST00000556079 FOXD4L1Q9NU39 408 aa10.18□□□□□ -0.78
TMEM260-209ENST00000556079 MYT1LQ9UL68 1186 aa10.18□□□□□ -0.78
TMEM260-209ENST00000556079 LRRC9Q6ZRR7 1453 aa10.17□□□□□ -0.78
TMEM260-209ENST00000556079 CFDP1Q9UEE9 299 aaPredicted RBP10.17□□□□□ -0.78
TMEM260-209ENST00000556079 INO80Q9ULG1 1556 aaPredicted RBP10.17□□□□□ -0.78
TMEM260-209ENST00000556079 DSG3P32926 999 aa10.16□□□□□ -0.78
TMEM260-209ENST00000556079 MLH3Q9UHC1 1453 aa10.16□□□□□ -0.78
TMEM260-209ENST00000556079 ATP7AQ04656 1500 aa10.15□□□□□ -0.78
TMEM260-209ENST00000556079 CAMSAP2Q08AD1 1489 aa10.15□□□□□ -0.78
TMEM260-209ENST00000556079 MBD5Q9P267 1494 aa10.14□□□□□ -0.79
TMEM260-209ENST00000556079 ADGBQ8N7X0 1667 aa10.13□□□□□ -0.79
TMEM260-209ENST00000556079 SPAG9O60271 1321 aaKnown RBP10.12□□□□□ -0.79
TMEM260-209ENST00000556079 ABCB7O75027 752 aa10.12□□□□□ -0.79
TMEM260-209ENST00000556079 ZNF219Q9P2Y4 722 aaPredicted RBP10.12□□□□□ -0.79
TMEM260-209ENST00000556079 REREQ9P2R6 1566 aa10.12□□□□□ -0.79
TMEM260-209ENST00000556079 KIAA1107Q9UPP5 1409 aa10.11□□□□□ -0.79
TMEM260-209ENST00000556079 C3P01024 1663 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms