RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 EFCAB2Q5VUJ9 269 aa32.82■■■□□ 2.84
VTI1B-205ENST00000555543 SCAPERQ9BY12 1400 aa32.82■■■□□ 2.84
VTI1B-205ENST00000555543 ZMYM4Q5VZL5 1548 aa32.8■■■□□ 2.84
VTI1B-205ENST00000555543 POGZQ7Z3K3 1410 aa32.79■■■□□ 2.84
VTI1B-205ENST00000555543 CDC42BPAQ5VT25 1732 aa32.78■■■□□ 2.84
VTI1B-205ENST00000555543 VPS8Q8N3P4 1428 aa32.77■■■□□ 2.84
VTI1B-205ENST00000555543 ARHGEF40Q8TER5 1519 aa32.77■■■□□ 2.84
VTI1B-205ENST00000555543 MTUS2Q5JR59 1369 aa32.75■■■□□ 2.83
VTI1B-205ENST00000555543 EHBP1L1Q8N3D4 1523 aa32.72■■■□□ 2.83
VTI1B-205ENST00000555543 GPATCH8Q9UKJ3 1502 aaKnown RBP32.7■■■□□ 2.83
VTI1B-205ENST00000555543 YEATS2Q9ULM3 1422 aa32.69■■■□□ 2.82
VTI1B-205ENST00000555543 ABCC1P33527 1531 aa32.68■■■□□ 2.82
VTI1B-205ENST00000555543 ZFYVE16Q7Z3T8 1539 aa32.68■■■□□ 2.82
VTI1B-205ENST00000555543 TIAM1Q13009 1591 aa32.66■■■□□ 2.82
VTI1B-205ENST00000555543 MAGI2Q86UL8 1455 aa32.66■■■□□ 2.82
VTI1B-205ENST00000555543 ZNF518AQ6AHZ1 1483 aa32.65■■■□□ 2.82
VTI1B-205ENST00000555543 ARHGEF12Q9NZN5 1544 aa32.65■■■□□ 2.82
VTI1B-205ENST00000555543 KDM5CP41229 1560 aa32.64■■■□□ 2.82
VTI1B-205ENST00000555543 ITSN2Q9NZM3 1697 aa32.62■■■□□ 2.81
VTI1B-205ENST00000555543 SAMD9LQ8IVG5 1584 aa32.62■■■□□ 2.81
VTI1B-205ENST00000555543 CCNB3Q8WWL7 1395 aa32.61■■■□□ 2.81
VTI1B-205ENST00000555543 AFAP1Q8N556 730 aa32.6■■■□□ 2.81
VTI1B-205ENST00000555543 SIGLEC1Q9BZZ2 1709 aa32.6■■■□□ 2.81
VTI1B-205ENST00000555543 TRAPPC8Q9Y2L5 1435 aa32.59■■■□□ 2.81
VTI1B-205ENST00000555543 BCORL1Q5H9F3 1711 aa32.56■■■□□ 2.8
VTI1B-205ENST00000555543 ZNF777Q9ULD5 760 aaPredicted RBP32.55■■■□□ 2.8
VTI1B-205ENST00000555543 ADAMTSL3P82987 1691 aa32.55■■■□□ 2.8
VTI1B-205ENST00000555543 HECW2Q9P2P5 1572 aa32.54■■■□□ 2.8
VTI1B-205ENST00000555543 SYCP2Q9BX26 1530 aa32.54■■■□□ 2.8
VTI1B-205ENST00000555543 ARID4BQ4LE39 1312 aaPredicted RBP32.53■■■□□ 2.8
VTI1B-205ENST00000555543 SUPT6HQ7KZ85 1726 aaKnown RBP32.52■■■□□ 2.8
VTI1B-205ENST00000555543 CFDP1Q9UEE9 299 aaPredicted RBP32.52■■■□□ 2.8
VTI1B-205ENST00000555543 NCOA2Q15596 1464 aa32.52■■■□□ 2.8
VTI1B-205ENST00000555543 LRRC9Q6ZRR7 1453 aa32.51■■■□□ 2.79
VTI1B-205ENST00000555543 MAP3K1Q13233 1512 aa32.5■■■□□ 2.79
VTI1B-205ENST00000555543 ATP10AO60312 1499 aa32.48■■■□□ 2.79
VTI1B-205ENST00000555543 MLH3Q9UHC1 1453 aa32.48■■■□□ 2.79
VTI1B-205ENST00000555543 DIP2CQ9Y2E4 1556 aa32.48■■■□□ 2.79
VTI1B-205ENST00000555543 C9orf84Q5VXU9 1444 aa32.47■■■□□ 2.79
VTI1B-205ENST00000555543 ABCA6Q8N139 1617 aa32.46■■■□□ 2.79
VTI1B-205ENST00000555543 MADDQ8WXG6 1647 aa32.46■■■□□ 2.79
VTI1B-205ENST00000555543 KIAA1107Q9UPP5 1409 aa32.44■■■□□ 2.78
VTI1B-205ENST00000555543 PLEKHH2Q8IVE3 1493 aa32.44■■■□□ 2.78
VTI1B-205ENST00000555543 HNRNPMP52272 730 aaKnown RBP eCLIP32.43■■■□□ 2.78
VTI1B-205ENST00000555543 KANK4Q5T7N3 995 aaPredicted RBP32.43■■■□□ 2.78
VTI1B-205ENST00000555543 ZNF644Q9H582 1327 aaPredicted RBP32.42■■■□□ 2.78
VTI1B-205ENST00000555543 KIDINS220Q9ULH0 1771 aa32.42■■■□□ 2.78
VTI1B-205ENST00000555543 MYT1LQ9UL68 1186 aa32.41■■■□□ 2.78
VTI1B-205ENST00000555543 PTPRMP28827 1452 aa32.39■■■□□ 2.78
VTI1B-205ENST00000555543 REREQ9P2R6 1566 aa32.36■■■□□ 2.77
VTI1B-205ENST00000555543 MBD5Q9P267 1494 aa32.35■■■□□ 2.77
VTI1B-205ENST00000555543 RIMS1Q86UR5 1692 aaKnown RBP32.34■■■□□ 2.77
VTI1B-205ENST00000555543 INO80Q9ULG1 1556 aaPredicted RBP32.32■■■□□ 2.77
VTI1B-205ENST00000555543 CAMSAP2Q08AD1 1489 aa32.32■■■□□ 2.76
VTI1B-205ENST00000555543 MLECQ14165 292 aa32.32■■■□□ 2.76
VTI1B-205ENST00000555543 ATP7AQ04656 1500 aa32.31■■■□□ 2.76
VTI1B-205ENST00000555543 SPAG9O60271 1321 aaKnown RBP32.31■■■□□ 2.76
VTI1B-205ENST00000555543 FER1L4A9Z1Z3 1794 aa32.27■■■□□ 2.76
VTI1B-205ENST00000555543 APLP2Q06481 763 aa32.25■■■□□ 2.75
VTI1B-205ENST00000555543 AGLP35573 1532 aa32.25■■■□□ 2.75
VTI1B-205ENST00000555543 MYOM3Q5VTT5 1437 aa32.22■■■□□ 2.75
VTI1B-205ENST00000555543 CCDC141Q6ZP82 1450 aa32.2■■■□□ 2.75
VTI1B-205ENST00000555543 PLXNC1O60486 1568 aa32.17■■■□□ 2.74
VTI1B-205ENST00000555543 ARHGEF5Q12774 1597 aa32.17■■■□□ 2.74
VTI1B-205ENST00000555543 MIA2Q96PC5 1412 aa32.16■■■□□ 2.74
VTI1B-205ENST00000555543 RTEL1-TNFRSF6BF6WH68 1400 aa32.14■■■□□ 2.74
VTI1B-205ENST00000555543 A2MP01023 1474 aa32.14■■■□□ 2.74
VTI1B-205ENST00000555543 ADGBQ8N7X0 1667 aa32.11■■■□□ 2.73
VTI1B-205ENST00000555543 PLPPR3Q6T4P5 718 aa32.11■■■□□ 2.73
VTI1B-205ENST00000555543 RSPH4AQ5TD94 716 aa32.07■■■□□ 2.72
VTI1B-205ENST00000555543 PTPN23Q9H3S7 1636 aa32.03■■■□□ 2.72
VTI1B-205ENST00000555543 LMTK3Q96Q04 1460 aa32.02■■■□□ 2.72
VTI1B-205ENST00000555543 FGD6Q6ZV73 1430 aa32.01■■■□□ 2.72
VTI1B-205ENST00000555543 CEBPAP49715 358 aaPredicted RBP32.01■■■□□ 2.71
VTI1B-205ENST00000555543 MAST1Q9Y2H9 1570 aa32■■■□□ 2.71
VTI1B-205ENST00000555543 DHX29Q7Z478 1369 aaKnown RBP31.99■■■□□ 2.71
VTI1B-205ENST00000555543 C3P01024 1663 aa31.98■■■□□ 2.71
VTI1B-205ENST00000555543 TSPY4P0CV99 314 aa31.97■■■□□ 2.71
VTI1B-205ENST00000555543 TSPY10P0CW01 314 aa31.97■■■□□ 2.71
VTI1B-205ENST00000555543 TCOF1Q13428 1488 aaKnown RBP31.97■■■□□ 2.71
VTI1B-205ENST00000555543 CNTLNQ9NXG0 1405 aa31.95■■■□□ 2.71
VTI1B-205ENST00000555543 ESF1Q9H501 851 aaKnown RBP31.94■■■□□ 2.7
VTI1B-205ENST00000555543 CROCC2H7BZ55 1655 aa31.92■■■□□ 2.7
VTI1B-205ENST00000555543 GGT6Q6P531 493 aa31.91■■■□□ 2.7
VTI1B-205ENST00000555543 MROH2AA6NES4 1674 aa31.91■■■□□ 2.7
VTI1B-205ENST00000555543 ABCC5O15440 1437 aa31.91■■■□□ 2.7
VTI1B-205ENST00000555543 CLTCQ00610 1675 aaKnown RBP31.9■■■□□ 2.7
VTI1B-205ENST00000555543 DNMT1P26358 1616 aaKnown RBP31.89■■■□□ 2.7
VTI1B-205ENST00000555543 SHANK2Q9UPX8 1470 aa31.88■■■□□ 2.69
VTI1B-205ENST00000555543 PREX1Q8TCU6 1659 aa31.87■■■□□ 2.69
VTI1B-205ENST00000555543 DAPK1P53355 1430 aa31.86■■■□□ 2.69
VTI1B-205ENST00000555543 KIF3BO15066 747 aa31.85■■■□□ 2.69
VTI1B-205ENST00000555543 HSPA2P54652 639 aa31.83■■■□□ 2.69
VTI1B-205ENST00000555543 ZMYM3Q14202 1370 aa31.82■■■□□ 2.69
VTI1B-205ENST00000555543 PPP6R1Q9UPN7 881 aa31.78■■■□□ 2.68
VTI1B-205ENST00000555543 PPARGC1BQ86YN6 1023 aaKnown RBP31.77■■■□□ 2.68
VTI1B-205ENST00000555543 RNF17Q9BXT8 1623 aaKnown RBP31.77■■■□□ 2.68
VTI1B-205ENST00000555543 EIF2AK4Q9P2K8 1649 aaKnown RBP31.77■■■□□ 2.68
VTI1B-205ENST00000555543 UHRF1BP1Q6BDS2 1440 aa31.76■■■□□ 2.68
VTI1B-205ENST00000555543 DUOX2Q9NRD8 1548 aa31.76■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms