RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 GPR153Q6NV75 609 aa16.58■□□□□ 0.24
VRK1-203ENST00000555067 VARS2Q5ST30 1063 aaKnown RBP16.57■□□□□ 0.24
VRK1-203ENST00000555067 ZNF687Q8N1G0 1237 aa16.51■□□□□ 0.23
VRK1-203ENST00000555067 FBXO22Q8NEZ5 403 aa16.5■□□□□ 0.23
VRK1-203ENST00000555067 NLRP6P59044 892 aa16.48■□□□□ 0.23
VRK1-203ENST00000555067 BCL11BQ9C0K0 894 aaPredicted RBP16.45■□□□□ 0.22
VRK1-203ENST00000555067 RNF166Q96A37 237 aaPredicted RBP16.42■□□□□ 0.22
VRK1-203ENST00000555067 TAOK2Q9UL54 1235 aa16.42■□□□□ 0.22
VRK1-203ENST00000555067 ARSIQ5FYB1 569 aa16.41■□□□□ 0.22
VRK1-203ENST00000555067 MFRPQ9BY79 579 aa16.39■□□□□ 0.21
VRK1-203ENST00000555067 MYT1LQ9UL68 1186 aa16.37■□□□□ 0.21
VRK1-203ENST00000555067 STK24Q9Y6E0 443 aa16.37■□□□□ 0.21
VRK1-203ENST00000555067 KIF3CO14782 793 aa16.36■□□□□ 0.21
VRK1-203ENST00000555067 ZNF316A6NFI3 1004 aaPredicted RBP16.34■□□□□ 0.21
VRK1-203ENST00000555067 KHSRPQ92945 711 aaKnown RBP eCLIP16.34■□□□□ 0.213e-7■□□□□ 10.8
VRK1-203ENST00000555067 PTGER2P43116 358 aa16.3■□□□□ 0.2
VRK1-203ENST00000555067 STK25O00506 426 aa16.29■□□□□ 0.2
VRK1-203ENST00000555067 C2orf72A6NCS6 295 aa16.28■□□□□ 0.2
VRK1-203ENST00000555067 ECM2O94769 699 aaPredicted RBP16.23■□□□□ 0.19
VRK1-203ENST00000555067 SLC34A2O95436 690 aa16.21■□□□□ 0.19
VRK1-203ENST00000555067 LSM11P83369 360 aaKnown RBP eCLIP16.19■□□□□ 0.18
VRK1-203ENST00000555067 ANKRD13DQ6ZTN6 518 aa16.19■□□□□ 0.18
VRK1-203ENST00000555067 NUDT7P0C024 238 aa16.18■□□□□ 0.18
VRK1-203ENST00000555067 PKD2Q13563 968 aa16.18■□□□□ 0.18
VRK1-203ENST00000555067 RGL2O15211 777 aa16.16■□□□□ 0.18
VRK1-203ENST00000555067 PCDHGA4Q9Y5G9 962 aa16.15■□□□□ 0.18
VRK1-203ENST00000555067 PBX2P40425 430 aa16.14■□□□□ 0.17
VRK1-203ENST00000555067 POTEEQ6S8J3 1075 aa16.14■□□□□ 0.17
VRK1-203ENST00000555067 LHX6Q9UPM6 363 aa16.13■□□□□ 0.17
VRK1-203ENST00000555067 TMC2Q8TDI7 906 aa16.09■□□□□ 0.17
VRK1-203ENST00000555067 PPP1R37O75864 691 aa16.07■□□□□ 0.16
VRK1-203ENST00000555067 AXIN2Q9Y2T1 843 aa16.03■□□□□ 0.16
VRK1-203ENST00000555067 KDM4FA0A1W2PPD8 638 aa16.02■□□□□ 0.16
VRK1-203ENST00000555067 PTCD2Q8WV60 388 aaKnown RBP15.97■□□□□ 0.15
VRK1-203ENST00000555067 PSDA5PKW4 1024 aaPredicted RBP15.96■□□□□ 0.15
VRK1-203ENST00000555067 ARHGAP33O14559 1287 aa15.93■□□□□ 0.14
VRK1-203ENST00000555067 FOXK1P85037 733 aa15.92■□□□□ 0.14
VRK1-203ENST00000555067 ADGRD1Q6QNK2 874 aa15.91■□□□□ 0.14
VRK1-203ENST00000555067 PLPP6Q8IY26 295 aa15.87■□□□□ 0.13
VRK1-203ENST00000555067 GPHNQ9NQX3 736 aaPredicted RBP15.87■□□□□ 0.13
VRK1-203ENST00000555067 TK2O00142 265 aa15.86■□□□□ 0.13
VRK1-203ENST00000555067 HS6ST3Q8IZP7 471 aa15.85■□□□□ 0.13
VRK1-203ENST00000555067 HCSTQ9UBK5 93 aa15.85■□□□□ 0.13
VRK1-203ENST00000555067 HRO43593 1189 aa15.84■□□□□ 0.13
VRK1-203ENST00000555067 DMRTA1Q5VZB9 504 aa15.82■□□□□ 0.12
VRK1-203ENST00000555067 DSG2Q14126 1118 aa15.81■□□□□ 0.12
VRK1-203ENST00000555067 PSEN2P49810 448 aa15.8■□□□□ 0.12
VRK1-203ENST00000555067 PLA2G2EQ9NZK7 142 aa15.8■□□□□ 0.12
VRK1-203ENST00000555067 PPP4R3BQ5MIZ7 849 aa15.76■□□□□ 0.11
VRK1-203ENST00000555067 TBC1D12O60347 775 aa15.74■□□□□ 0.11
VRK1-203ENST00000555067 DNAJC5Q9H3Z4 198 aa15.72■□□□□ 0.11
VRK1-203ENST00000555067 OXER1Q8TDS5 423 aa15.69■□□□□ 0.1
VRK1-203ENST00000555067 NKX1-1Q15270 411 aaPredicted RBP15.65■□□□□ 0.1
VRK1-203ENST00000555067 CRISPLD2Q9H0B8 497 aa15.65■□□□□ 0.1
VRK1-203ENST00000555067 CHGAP10645 457 aaKnown RBP15.64■□□□□ 0.09
VRK1-203ENST00000555067 KCNK17Q96T54 332 aa15.63■□□□□ 0.09
VRK1-203ENST00000555067 KCTD12Q96CX2 325 aaKnown RBP15.62■□□□□ 0.09
VRK1-203ENST00000555067 VPS9D1Q9Y2B5 631 aa15.61■□□□□ 0.09
VRK1-203ENST00000555067 UPF1Q92900 1129 aaKnown RBP eCLIP15.58■□□□□ 0.08
VRK1-203ENST00000555067 KCNH8Q96L42 1107 aa15.58■□□□□ 0.08
VRK1-203ENST00000555067 SLC4A5Q9BY07 1137 aa15.58■□□□□ 0.08
VRK1-203ENST00000555067 BCL2L12Q9HB09 334 aa15.58■□□□□ 0.08
VRK1-203ENST00000555067 RYDENQ9NUL5 291 aaKnown RBP15.56■□□□□ 0.08
VRK1-203ENST00000555067 ZNF454Q8N9F8 522 aa15.55■□□□□ 0.08
VRK1-203ENST00000555067 STAC3Q96MF2 364 aa15.55■□□□□ 0.08
VRK1-203ENST00000555067 PPP1R15BQ5SWA1 713 aa15.54■□□□□ 0.08
VRK1-203ENST00000555067 FOSBP53539 338 aa15.53■□□□□ 0.08
VRK1-203ENST00000555067 BHMG1C9JSJ3 638 aaPredicted RBP15.52■□□□□ 0.08
VRK1-203ENST00000555067 ANO8Q9HCE9 1232 aaPredicted RBP15.52■□□□□ 0.08
VRK1-203ENST00000555067 NCKAP5LQ9HCH0 1330 aa15.51■□□□□ 0.07
VRK1-203ENST00000555067 PDE4AP27815 886 aa15.46■□□□□ 0.07
VRK1-203ENST00000555067 ZBED2Q9BTP6 218 aa15.46■□□□□ 0.07
VRK1-203ENST00000555067 PTPREP23469 700 aa15.45■□□□□ 0.06
VRK1-203ENST00000555067 JPH4Q96JJ6 628 aa15.45■□□□□ 0.06
VRK1-203ENST00000555067 PTPN5P54829 565 aa15.44■□□□□ 0.06
VRK1-203ENST00000555067 IFFO2Q5TF58 517 aa15.44■□□□□ 0.06
VRK1-203ENST00000555067 THSD4Q6ZMP0 1018 aa15.43■□□□□ 0.06
VRK1-203ENST00000555067 EVI5O60447 810 aa15.41■□□□□ 0.06
VRK1-203ENST00000555067 ADAM33Q9BZ11 813 aa15.39■□□□□ 0.05
VRK1-203ENST00000555067 GTPBP6O43824 516 aaPredicted RBP15.38■□□□□ 0.05
VRK1-203ENST00000555067 ZDHHC16Q969W1 377 aa15.38■□□□□ 0.05
VRK1-203ENST00000555067 RGS20O76081 388 aa15.35■□□□□ 0.05
VRK1-203ENST00000555067 MFSD10Q14728 455 aa15.35■□□□□ 0.05
VRK1-203ENST00000555067 MRPL50Q8N5N7 158 aaKnown RBP15.34■□□□□ 0.05
VRK1-203ENST00000555067 WNT2BQ93097 391 aa15.33■□□□□ 0.04
VRK1-203ENST00000555067 DDX27Q96GQ7 796 aaKnown RBP15.33■□□□□ 0.04
VRK1-203ENST00000555067 LARP6Q9BRS8 491 aaKnown RBP15.33■□□□□ 0.04
VRK1-203ENST00000555067 GOLGA8CPA6NN73 597 aa15.3■□□□□ 0.04
VRK1-203ENST00000555067 NBPF3Q9H094 633 aa15.3■□□□□ 0.04
VRK1-203ENST00000555067 MAP3K9P80192 1104 aa15.28■□□□□ 0.04
VRK1-203ENST00000555067 EMILIN3Q9NT22 766 aa15.28■□□□□ 0.04
VRK1-203ENST00000555067 A0A0G2JS52 829 aa15.27■□□□□ 0.04
VRK1-203ENST00000555067 PPP1R3GB7ZBB8 358 aa15.26■□□□□ 0.03
VRK1-203ENST00000555067 PCDHGA10Q9Y5H3 936 aa15.26■□□□□ 0.03
VRK1-203ENST00000555067 RABGEF1Q9UJ41 708 aa15.23■□□□□ 0.03
VRK1-203ENST00000555067 COL9A1P20849 921 aa15.19■□□□□ 0.02
VRK1-203ENST00000555067 PROX2Q3B8N5 592 aa15.19■□□□□ 0.02
VRK1-203ENST00000555067 PHF14O94880 888 aa15.17■□□□□ 0.02
VRK1-203ENST00000555067 TYW1BQ6NUM6 668 aa15.16■□□□□ 0.02
VRK1-203ENST00000555067 FBXW7Q969H0 707 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms