RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, human

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF39-208	ENST00000554785	ZFP91	Q96JP5	570 aa	Predicted RBP	4.4	□□□□□ -1.7
PRPF39-208	ENST00000554785	ECM2	O94769	699 aa	Predicted RBP	4.39	□□□□□ -1.71
PRPF39-208	ENST00000554785	ZSWIM6	Q9HCJ5	1215 aa		4.39	□□□□□ -1.71
PRPF39-208	ENST00000554785	BOLA1	Q9Y3E2	137 aa		4.39	□□□□□ -1.71
PRPF39-208	ENST00000554785	HOXB1	P14653	301 aa	Predicted RBP	4.39	□□□□□ -1.71
PRPF39-208	ENST00000554785	ZNF710	Q8N1W2	664 aa		4.39	□□□□□ -1.71
PRPF39-208	ENST00000554785	EFCAB3	Q8N7B9	438 aa		4.39	□□□□□ -1.71
PRPF39-208	ENST00000554785	VGF	O15240	615 aa	Predicted RBP	4.37	□□□□□ -1.71
PRPF39-208	ENST00000554785	SUZ12	Q15022	739 aa	Known RBP	4.36	□□□□□ -1.71
PRPF39-208	ENST00000554785	ZNF775	Q96BV0	537 aa	Predicted RBP	4.36	□□□□□ -1.71
PRPF39-208	ENST00000554785	BCL11B	Q9C0K0	894 aa	Predicted RBP	4.36	□□□□□ -1.71
PRPF39-208	ENST00000554785	TRAF7	Q6Q0C0	670 aa		4.36	□□□□□ -1.71
PRPF39-208	ENST00000554785	ZNF687	Q8N1G0	1237 aa		4.36	□□□□□ -1.71
PRPF39-208	ENST00000554785	MS4A4A	Q96JQ5	239 aa		4.35	□□□□□ -1.71
PRPF39-208	ENST00000554785	PHF8	Q9UPP1	1060 aa		4.34	□□□□□ -1.71
PRPF39-208	ENST00000554785	STK25	O00506	426 aa		4.34	□□□□□ -1.71
PRPF39-208	ENST00000554785	HOXB3	P14651	431 aa	Predicted RBP	4.34	□□□□□ -1.71
PRPF39-208	ENST00000554785	ANKRD13D	Q6ZTN6	518 aa		4.34	□□□□□ -1.71
PRPF39-208	ENST00000554785	STK24	Q9Y6E0	443 aa		4.34	□□□□□ -1.71
PRPF39-208	ENST00000554785	SOX12	O15370	315 aa		4.33	□□□□□ -1.72
PRPF39-208	ENST00000554785	LAPTM4A	Q15012	233 aa		4.32	□□□□□ -1.72
PRPF39-208	ENST00000554785	VARS2	Q5ST30	1063 aa	Known RBP	4.32	□□□□□ -1.72
PRPF39-208	ENST00000554785	IFFO2	Q5TF58	517 aa		4.32	□□□□□ -1.72
PRPF39-208	ENST00000554785	MFRP	Q9BY79	579 aa		4.32	□□□□□ -1.72
PRPF39-208	ENST00000554785	TAOK2	Q9UL54	1235 aa		4.32	□□□□□ -1.72
PRPF39-208	ENST00000554785	ZNF787	Q6DD87	383 aa		4.31	□□□□□ -1.72
PRPF39-208	ENST00000554785	FBXO22	Q8NEZ5	403 aa		4.31	□□□□□ -1.72
PRPF39-208	ENST00000554785	TMEM92	Q6UXU6	159 aa		4.3	□□□□□ -1.72
PRPF39-208	ENST00000554785	MICALL2	Q8IY33	904 aa		4.29	□□□□□ -1.72
PRPF39-208	ENST00000554785	LCE2B	O14633	110 aa		4.28	□□□□□ -1.72
PRPF39-208	ENST00000554785	PPP1R37	O75864	691 aa		4.28	□□□□□ -1.72
PRPF39-208	ENST00000554785	STK17A	Q9UEE5	414 aa		4.28	□□□□□ -1.72
PRPF39-208	ENST00000554785	CHGA	P10645	457 aa	Known RBP	4.27	□□□□□ -1.73
PRPF39-208	ENST00000554785	PBX2	P40425	430 aa		4.27	□□□□□ -1.73
PRPF39-208	ENST00000554785	NLRP6	P59044	892 aa		4.27	□□□□□ -1.73
PRPF39-208	ENST00000554785	NKX1-1	Q15270	411 aa	Predicted RBP	4.27	□□□□□ -1.73
PRPF39-208	ENST00000554785		A0A0G2JS52	829 aa		4.27	□□□□□ -1.73
PRPF39-208	ENST00000554785	HS6ST3	Q8IZP7	471 aa		4.27	□□□□□ -1.73
PRPF39-208	ENST00000554785	GPR153	Q6NV75	609 aa		4.25	□□□□□ -1.73
PRPF39-208	ENST00000554785	PSD	A5PKW4	1024 aa	Predicted RBP	4.24	□□□□□ -1.73
PRPF39-208	ENST00000554785	ZNF316	A6NFI3	1004 aa	Predicted RBP	4.23	□□□□□ -1.73
PRPF39-208	ENST00000554785	KRTAP4-8	Q9BYQ9	185 aa		4.23	□□□□□ -1.73
PRPF39-208	ENST00000554785	RTN4	Q9NQC3	1192 aa	Known RBP	4.23	□□□□□ -1.73
PRPF39-208	ENST00000554785	LSM11	P83369	360 aa	Known RBP eCLIP	4.22	□□□□□ -1.73	6e-6	■□□□□ 8.3
PRPF39-208	ENST00000554785	KIF3C	O14782	793 aa		4.21	□□□□□ -1.74
PRPF39-208	ENST00000554785	DNAJC5	Q9H3Z4	198 aa		4.21	□□□□□ -1.74
PRPF39-208	ENST00000554785	C2orf72	A6NCS6	295 aa		4.21	□□□□□ -1.74
PRPF39-208	ENST00000554785	SLC34A2	O95436	690 aa		4.21	□□□□□ -1.74
PRPF39-208	ENST00000554785	DCAF8L2	P0C7V8	631 aa		4.21	□□□□□ -1.74
PRPF39-208	ENST00000554785	GTPBP6	O43824	516 aa	Predicted RBP	4.19	□□□□□ -1.74
PRPF39-208	ENST00000554785	ARSI	Q5FYB1	569 aa		4.19	□□□□□ -1.74
PRPF39-208	ENST00000554785	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.18	□□□□□ -1.74
PRPF39-208	ENST00000554785	KHSRP	Q92945	711 aa	Known RBP eCLIP	4.18	□□□□□ -1.74	5e-10	■■■□□ 17.8
PRPF39-208	ENST00000554785	TK2	O00142	265 aa		4.17	□□□□□ -1.74
PRPF39-208	ENST00000554785	KRTAP1-3	Q8IUG1	177 aa		4.17	□□□□□ -1.74
PRPF39-208	ENST00000554785	AMER1	Q5JTC6	1135 aa	Predicted RBP	4.16	□□□□□ -1.74
PRPF39-208	ENST00000554785	TMC2	Q8TDI7	906 aa		4.15	□□□□□ -1.74
PRPF39-208	ENST00000554785	KCNH8	Q96L42	1107 aa		4.15	□□□□□ -1.74
PRPF39-208	ENST00000554785	ARHGAP33	O14559	1287 aa		4.15	□□□□□ -1.75
PRPF39-208	ENST00000554785	DSG2	Q14126	1118 aa		4.15	□□□□□ -1.75
PRPF39-208	ENST00000554785	TREML4	Q6UXN2	200 aa		4.15	□□□□□ -1.75
PRPF39-208	ENST00000554785	KRTAP9-2	Q9BYQ4	174 aa		4.15	□□□□□ -1.75
PRPF39-208	ENST00000554785	KRTAP9-6	A0A140TA67	174 aa		4.14	□□□□□ -1.75
PRPF39-208	ENST00000554785	GPHN	Q9NQX3	736 aa	Predicted RBP	4.14	□□□□□ -1.75
PRPF39-208	ENST00000554785	PCDHGA4	Q9Y5G9	962 aa		4.14	□□□□□ -1.75
PRPF39-208	ENST00000554785	NCKAP5L	Q9HCH0	1330 aa		4.14	□□□□□ -1.75
PRPF39-208	ENST00000554785	GFRA3	O60609	400 aa		4.13	□□□□□ -1.75
PRPF39-208	ENST00000554785	STAC3	Q96MF2	364 aa		4.13	□□□□□ -1.75
PRPF39-208	ENST00000554785	TBC1D12	O60347	775 aa		4.13	□□□□□ -1.75
PRPF39-208	ENST00000554785	FOXK1	P85037	733 aa		4.13	□□□□□ -1.75
PRPF39-208	ENST00000554785	CADPS2	Q86UW7	1296 aa		4.13	□□□□□ -1.75
PRPF39-208	ENST00000554785	PLPP6	Q8IY26	295 aa		4.13	□□□□□ -1.75
PRPF39-208	ENST00000554785	CRISPLD2	Q9H0B8	497 aa		4.13	□□□□□ -1.75
PRPF39-208	ENST00000554785	NUDT7	P0C024	238 aa		4.12	□□□□□ -1.75
PRPF39-208	ENST00000554785	ADGRD1	Q6QNK2	874 aa		4.12	□□□□□ -1.75
PRPF39-208	ENST00000554785	LHX6	Q9UPM6	363 aa		4.12	□□□□□ -1.75
PRPF39-208	ENST00000554785	LCE2A	Q5TA79	106 aa	Predicted RBP	4.11	□□□□□ -1.75
PRPF39-208	ENST00000554785	RYDEN	Q9NUL5	291 aa	Known RBP	4.11	□□□□□ -1.75
PRPF39-208	ENST00000554785	KDM4F	A0A1W2PPD8	638 aa		4.1	□□□□□ -1.75
PRPF39-208	ENST00000554785	PPP4R3B	Q5MIZ7	849 aa		4.1	□□□□□ -1.75
PRPF39-208	ENST00000554785	PTCD2	Q8WV60	388 aa	Known RBP	4.1	□□□□□ -1.75
PRPF39-208	ENST00000554785	BBX	Q8WY36	941 aa	Predicted RBP	4.1	□□□□□ -1.75
PRPF39-208	ENST00000554785	ANO8	Q9HCE9	1232 aa	Predicted RBP	4.09	□□□□□ -1.75
PRPF39-208	ENST00000554785	INSM1	Q01101	510 aa	Predicted RBP	4.09	□□□□□ -1.76
PRPF39-208	ENST00000554785	POTEE	Q6S8J3	1075 aa		4.09	□□□□□ -1.76
PRPF39-208	ENST00000554785	LARP6	Q9BRS8	491 aa	Known RBP	4.09	□□□□□ -1.76
PRPF39-208	ENST00000554785	HR	O43593	1189 aa		4.08	□□□□□ -1.76
PRPF39-208	ENST00000554785	PPP1R15B	Q5SWA1	713 aa		4.08	□□□□□ -1.76
PRPF39-208	ENST00000554785	UPF1	Q92900	1129 aa	Known RBP eCLIP	4.08	□□□□□ -1.76
PRPF39-208	ENST00000554785	SLC4A5	Q9BY07	1137 aa		4.08	□□□□□ -1.76
PRPF39-208	ENST00000554785	NRG2	O14511	850 aa	Predicted RBP	4.07	□□□□□ -1.76
PRPF39-208	ENST00000554785	PDE4A	P27815	886 aa		4.07	□□□□□ -1.76
PRPF39-208	ENST00000554785	OXER1	Q8TDS5	423 aa		4.07	□□□□□ -1.76
PRPF39-208	ENST00000554785	MFSD10	Q14728	455 aa		4.06	□□□□□ -1.76
PRPF39-208	ENST00000554785	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	4.06	□□□□□ -1.76
PRPF39-208	ENST00000554785	DDX27	Q96GQ7	796 aa	Known RBP	4.06	□□□□□ -1.76
PRPF39-208	ENST00000554785	EMILIN3	Q9NT22	766 aa		4.06	□□□□□ -1.76
PRPF39-208	ENST00000554785	AXIN2	Q9Y2T1	843 aa		4.06	□□□□□ -1.76
PRPF39-208	ENST00000554785	SPRYD3	Q8NCJ5	442 aa		4.06	□□□□□ -1.76
PRPF39-208	ENST00000554785	CFAP44	Q96MT7	982 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms