RNA–Protein interactions for RNA: ENST00000554584.5

SYNE2-212, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5 BASIC

Gene SYNE2, Length 20,508 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-212ENST00000554584 ATXN8OSP0DMR3 200 aa4.35□□□□□ -1.71
SYNE2-212ENST00000554584 U2SURPO15042 1029 aaKnown RBP4.35□□□□□ -1.71
SYNE2-212ENST00000554584 CC2D1BQ5T0F9 858 aaKnown RBP4.35□□□□□ -1.71
SYNE2-212ENST00000554584 TOMM22Q9NS69 142 aa4.35□□□□□ -1.71
SYNE2-212ENST00000554584 FOXD1Q16676 465 aa4.35□□□□□ -1.71
SYNE2-212ENST00000554584 PIP4K2BP78356 416 aa4.34□□□□□ -1.71
SYNE2-212ENST00000554584 NOC3LQ8WTT2 800 aaKnown RBP4.34□□□□□ -1.71
SYNE2-212ENST00000554584 MYH16Q9H6N6 1097 aa4.34□□□□□ -1.72
SYNE2-212ENST00000554584 MEX3CQ5U5Q3 659 aaKnown RBP4.34□□□□□ -1.72
SYNE2-212ENST00000554584 PODXL2Q9NZ53 605 aa4.34□□□□□ -1.72
SYNE2-212ENST00000554584 KCNJ4P48050 445 aa4.33□□□□□ -1.72
SYNE2-212ENST00000554584 PAF1Q8N7H5 531 aa4.33□□□□□ -1.72
SYNE2-212ENST00000554584 CHMP4BP1P59074 171 aa4.33□□□□□ -1.72
SYNE2-212ENST00000554584 PAXIP1Q6ZW49 1069 aaPredicted RBP4.33□□□□□ -1.72
SYNE2-212ENST00000554584 TRIM44Q96DX7 344 aaPredicted RBP4.33□□□□□ -1.72
SYNE2-212ENST00000554584 MYCNP04198 464 aaPredicted RBP4.33□□□□□ -1.72
SYNE2-212ENST00000554584 POGKQ9P215 609 aa4.33□□□□□ -1.72
SYNE2-212ENST00000554584 USP35Q9P2H5 1018 aa4.33□□□□□ -1.72
SYNE2-212ENST00000554584 WDR43Q15061 677 aaKnown RBP eCLIP4.32□□□□□ -1.72
SYNE2-212ENST00000554584 HSP90B1P14625 803 aaKnown RBP4.32□□□□□ -1.72
SYNE2-212ENST00000554584 WDR78Q5VTH9 848 aa4.32□□□□□ -1.72
SYNE2-212ENST00000554584 FOXD4L6Q3SYB3 417 aaPredicted RBP4.32□□□□□ -1.72
SYNE2-212ENST00000554584 B4GALNT3Q6L9W6 998 aa4.32□□□□□ -1.72
SYNE2-212ENST00000554584 FOXD4L3Q6VB84 417 aaPredicted RBP4.32□□□□□ -1.72
SYNE2-212ENST00000554584 GNL2Q13823 731 aaKnown RBP4.32□□□□□ -1.72
SYNE2-212ENST00000554584 GON4LQ3T8J9 2241 aa4.31□□□□□ -1.72
SYNE2-212ENST00000554584 ANP32EQ9BTT0 268 aa4.31□□□□□ -1.72
SYNE2-212ENST00000554584 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.31□□□□□ -1.72
SYNE2-212ENST00000554584 DRC7Q8IY82 874 aa4.3□□□□□ -1.72
SYNE2-212ENST00000554584 FYB1O15117 783 aa4.3□□□□□ -1.72
SYNE2-212ENST00000554584 SYTL4Q96C24 671 aaPredicted RBP4.3□□□□□ -1.72
SYNE2-212ENST00000554584 A0A0U1RQG5 324 aaPredicted RBP4.3□□□□□ -1.72
SYNE2-212ENST00000554584 L1TD1Q5T7N2 865 aaKnown RBP4.3□□□□□ -1.72
SYNE2-212ENST00000554584 GGT6Q6P531 493 aa4.3□□□□□ -1.72
SYNE2-212ENST00000554584 MRS2Q9HD23 443 aa4.3□□□□□ -1.72
SYNE2-212ENST00000554584 RASSF8Q8NHQ8 419 aa4.29□□□□□ -1.72
SYNE2-212ENST00000554584 UPF2Q9HAU5 1272 aaKnown RBP4.29□□□□□ -1.72
SYNE2-212ENST00000554584 SKIDA1Q1XH10 827 aa4.29□□□□□ -1.72
SYNE2-212ENST00000554584 MARCH6O60337 910 aa4.29□□□□□ -1.72
SYNE2-212ENST00000554584 SCRIBQ14160 1630 aa4.29□□□□□ -1.72
SYNE2-212ENST00000554584 ELL2O00472 640 aaPredicted RBP4.28□□□□□ -1.72
SYNE2-212ENST00000554584 GTF2E1P29083 439 aaPredicted RBP4.28□□□□□ -1.72
SYNE2-212ENST00000554584 APPP05067 770 aa4.27□□□□□ -1.73
SYNE2-212ENST00000554584 RRP7AQ9Y3A4 280 aaKnown RBP4.27□□□□□ -1.73
SYNE2-212ENST00000554584 CHMP7Q8WUX9 453 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-212ENST00000554584 SIN3AQ96ST3 1273 aa4.27□□□□□ -1.73
SYNE2-212ENST00000554584 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-212ENST00000554584 RBM33Q96EV2 1170 aaKnown RBP4.27□□□□□ -1.73
SYNE2-212ENST00000554584 CCDC146Q8IYE0 955 aa4.27□□□□□ -1.73
SYNE2-212ENST00000554584 CTDP1Q9Y5B0 961 aaPredicted RBP4.27□□□□□ -1.73
SYNE2-212ENST00000554584 SETD1BQ9UPS6 1966 aaKnown RBP4.27□□□□□ -1.73
SYNE2-212ENST00000554584 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.27□□□□□ -1.73
SYNE2-212ENST00000554584 BAZ1BQ9UIG0 1483 aaKnown RBP4.26□□□□□ -1.73
SYNE2-212ENST00000554584 DHX16O60231 1041 aaKnown RBP4.26□□□□□ -1.73
SYNE2-212ENST00000554584 BBXQ8WY36 941 aaPredicted RBP4.26□□□□□ -1.73
SYNE2-212ENST00000554584 GZF1Q9H116 711 aaPredicted RBP4.26□□□□□ -1.73
SYNE2-212ENST00000554584 PSMD1Q99460 953 aa4.26□□□□□ -1.73
SYNE2-212ENST00000554584 HSP90AB1P08238 724 aaKnown RBP4.26□□□□□ -1.73
SYNE2-212ENST00000554584 PLIN1O60240 522 aa4.25□□□□□ -1.73
SYNE2-212ENST00000554584 XPCQ01831 940 aaPredicted RBP4.25□□□□□ -1.73
SYNE2-212ENST00000554584 CCAR2Q8N163 923 aaKnown RBP4.25□□□□□ -1.73
SYNE2-212ENST00000554584 FRAT2O75474 233 aaPredicted RBP4.25□□□□□ -1.73
SYNE2-212ENST00000554584 TONSLQ96HA7 1378 aa4.25□□□□□ -1.73
SYNE2-212ENST00000554584 RSPH4AQ5TD94 716 aa4.25□□□□□ -1.73
SYNE2-212ENST00000554584 EIF4G1Q04637 1599 aaKnown RBP4.25□□□□□ -1.73
SYNE2-212ENST00000554584 GOLGA6L4A6NEF3 574 aa4.25□□□□□ -1.73
SYNE2-212ENST00000554584 GORABQ5T7V8 394 aa4.25□□□□□ -1.73
SYNE2-212ENST00000554584 E9PSI1 815 aa4.25□□□□□ -1.73
SYNE2-212ENST00000554584 DCAF8L1A6NGE4 600 aa4.25□□□□□ -1.73
SYNE2-212ENST00000554584 ZBTB9Q96C00 473 aa4.24□□□□□ -1.73
SYNE2-212ENST00000554584 SRPK2P78362 688 aaKnown RBP4.24□□□□□ -1.73
SYNE2-212ENST00000554584 PES1O00541 588 aaKnown RBP4.24□□□□□ -1.73
SYNE2-212ENST00000554584 TMX4Q9H1E5 349 aaPredicted RBP4.24□□□□□ -1.73
SYNE2-212ENST00000554584 CCDC97Q96F63 343 aaPredicted RBP4.24□□□□□ -1.73
SYNE2-212ENST00000554584 TMEM132AQ24JP5 1023 aa4.24□□□□□ -1.73
SYNE2-212ENST00000554584 MIER1Q8N108 512 aa4.23□□□□□ -1.73
SYNE2-212ENST00000554584 CSRNP3Q8WYN3 585 aa4.23□□□□□ -1.73
SYNE2-212ENST00000554584 CA8P35219 290 aa4.23□□□□□ -1.73
SYNE2-212ENST00000554584 SPINK5Q9NQ38 1064 aaPredicted RBP4.23□□□□□ -1.73
SYNE2-212ENST00000554584 PTMSP20962 102 aa4.23□□□□□ -1.73
SYNE2-212ENST00000554584 FTSJ3Q8IY81 847 aaKnown RBP4.23□□□□□ -1.73
SYNE2-212ENST00000554584 CYB5RLQ6IPT4 315 aa4.22□□□□□ -1.73
SYNE2-212ENST00000554584 SLC4A10Q6U841 1118 aa4.22□□□□□ -1.73
SYNE2-212ENST00000554584 MPNDQ8N594 471 aa4.22□□□□□ -1.73
SYNE2-212ENST00000554584 KCNA4P22459 653 aa4.22□□□□□ -1.73
SYNE2-212ENST00000554584 CFAP65Q6ZU64 1925 aaKnown RBP4.22□□□□□ -1.73
SYNE2-212ENST00000554584 PLCD4Q9BRC7 762 aa4.22□□□□□ -1.73
SYNE2-212ENST00000554584 CSPG5O95196 566 aa4.21□□□□□ -1.73
SYNE2-212ENST00000554584 DEKP35659 375 aaKnown RBP4.21□□□□□ -1.74
SYNE2-212ENST00000554584 TCEAL9Q9UHQ7 104 aa4.21□□□□□ -1.74
SYNE2-212ENST00000554584 BICDL1Q6ZP65 573 aa4.21□□□□□ -1.74
SYNE2-212ENST00000554584 CCDC85AQ96PX6 553 aaPredicted RBP4.21□□□□□ -1.74
SYNE2-212ENST00000554584 SLC4A8Q2Y0W8 1093 aa4.2□□□□□ -1.74
SYNE2-212ENST00000554584 CLUAP1Q96AJ1 413 aa4.2□□□□□ -1.74
SYNE2-212ENST00000554584 TRMT1LQ7Z2T5 733 aaKnown RBP4.2□□□□□ -1.74
SYNE2-212ENST00000554584 PIBF1Q8WXW3 757 aa4.2□□□□□ -1.74
SYNE2-212ENST00000554584 MAPK8IP3Q9UPT6 1336 aa4.2□□□□□ -1.74
SYNE2-212ENST00000554584 STAC3Q96MF2 364 aa4.2□□□□□ -1.74
SYNE2-212ENST00000554584 STRN4Q9NRL3 753 aa4.2□□□□□ -1.74
SYNE2-212ENST00000554584 SPDYE4A6NLX3 237 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms