RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GPATCH8Q9UKJ3 1502 aaKnown RBP16.87■□□□□ 0.29
SHMT2-212ENST00000554467 FOXD1Q16676 465 aa16.87■□□□□ 0.29
SHMT2-212ENST00000554467 DAPK1P53355 1430 aa16.87■□□□□ 0.29
SHMT2-212ENST00000554467 ABCC5O15440 1437 aa16.87■□□□□ 0.29
SHMT2-212ENST00000554467 UACAQ9BZF9 1416 aa16.86■□□□□ 0.29
SHMT2-212ENST00000554467 CAMSAP2Q08AD1 1489 aa16.84■□□□□ 0.29
SHMT2-212ENST00000554467 MIER1Q8N108 512 aa16.83■□□□□ 0.29
SHMT2-212ENST00000554467 KCNH8Q96L42 1107 aa16.83■□□□□ 0.28
SHMT2-212ENST00000554467 HIRIP3Q9BW71 556 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-212ENST00000554467 SHROOM2Q13796 1616 aa16.81■□□□□ 0.28
SHMT2-212ENST00000554467 DNMT1P26358 1616 aaKnown RBP16.79■□□□□ 0.28
SHMT2-212ENST00000554467 HNRNPMP52272 730 aaKnown RBP eCLIP16.79■□□□□ 0.28
SHMT2-212ENST00000554467 GCC2Q8IWJ2 1684 aa16.78■□□□□ 0.28
SHMT2-212ENST00000554467 MPHOSPH9Q99550 1183 aa16.78■□□□□ 0.28
SHMT2-212ENST00000554467 ADCY10Q96PN6 1610 aa16.77■□□□□ 0.28
SHMT2-212ENST00000554467 TONSLQ96HA7 1378 aa16.77■□□□□ 0.28
SHMT2-212ENST00000554467 ABCC10Q5T3U5 1492 aa16.77■□□□□ 0.28
SHMT2-212ENST00000554467 ITSN2Q9NZM3 1697 aa16.76■□□□□ 0.27
SHMT2-212ENST00000554467 CDC42BPAQ5VT25 1732 aa16.76■□□□□ 0.27
SHMT2-212ENST00000554467 DENND4BO75064 1496 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-212ENST00000554467 CLASP1Q7Z460 1538 aa16.75■□□□□ 0.27
SHMT2-212ENST00000554467 AKNAQ7Z591 1439 aa16.75■□□□□ 0.27
SHMT2-212ENST00000554467 PPP1R15AO75807 674 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-212ENST00000554467 ROCK1Q13464 1354 aa16.72■□□□□ 0.27
SHMT2-212ENST00000554467 SLC4A1APQ9BWU0 796 aaKnown RBP16.72■□□□□ 0.27
SHMT2-212ENST00000554467 BCL11AQ9H165 835 aa16.71■□□□□ 0.27
SHMT2-212ENST00000554467 NCOA1Q15788 1441 aa16.71■□□□□ 0.27
SHMT2-212ENST00000554467 ABCC2Q92887 1545 aa16.71■□□□□ 0.27
SHMT2-212ENST00000554467 TSPY4P0CV99 314 aa16.68■□□□□ 0.26
SHMT2-212ENST00000554467 TSPY10P0CW01 314 aa16.68■□□□□ 0.26
SHMT2-212ENST00000554467 TTC37Q6PGP7 1564 aa16.67■□□□□ 0.26
SHMT2-212ENST00000554467 ANKRD30AQ9BXX3 1397 aa16.67■□□□□ 0.26
SHMT2-212ENST00000554467 C9orf84Q5VXU9 1444 aa16.66■□□□□ 0.26
SHMT2-212ENST00000554467 TIMELESSQ9UNS1 1208 aa16.66■□□□□ 0.26
SHMT2-212ENST00000554467 CDC42BPBQ9Y5S2 1711 aa16.65■□□□□ 0.26
SHMT2-212ENST00000554467 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.64■□□□□ 0.26
SHMT2-212ENST00000554467 ARHGAP5Q13017 1502 aa16.64■□□□□ 0.25
SHMT2-212ENST00000554467 CROCC2H7BZ55 1655 aa16.63■□□□□ 0.25
SHMT2-212ENST00000554467 DDX10Q13206 875 aaKnown RBP16.63■□□□□ 0.25
SHMT2-212ENST00000554467 SAMD9LQ8IVG5 1584 aa16.63■□□□□ 0.25
SHMT2-212ENST00000554467 ANKRD50Q9ULJ7 1429 aa16.63■□□□□ 0.25
SHMT2-212ENST00000554467 ZCCHC11Q5TAX3 1644 aaKnown RBP16.63■□□□□ 0.25
SHMT2-212ENST00000554467 ADGBQ8N7X0 1667 aa16.62■□□□□ 0.25
SHMT2-212ENST00000554467 L3MBTL2Q969R5 705 aa16.62■□□□□ 0.25
SHMT2-212ENST00000554467 MBD5Q9P267 1494 aa16.61■□□□□ 0.25
SHMT2-212ENST00000554467 PKD2Q13563 968 aa16.61■□□□□ 0.25
SHMT2-212ENST00000554467 KIF15Q9NS87 1388 aa16.6■□□□□ 0.25
SHMT2-212ENST00000554467 OSCARQ8IYS5 282 aa16.6■□□□□ 0.25
SHMT2-212ENST00000554467 PREX2Q70Z35 1606 aa16.6■□□□□ 0.25
SHMT2-212ENST00000554467 SYCP2Q9BX26 1530 aa16.6■□□□□ 0.25
SHMT2-212ENST00000554467 ADGRL2O95490 1459 aa16.6■□□□□ 0.25
SHMT2-212ENST00000554467 PZPP20742 1482 aa16.6■□□□□ 0.25
SHMT2-212ENST00000554467 ANKRD30BQ9BXX2 1392 aa16.59■□□□□ 0.25
SHMT2-212ENST00000554467 KDM5BQ9UGL1 1544 aa16.59■□□□□ 0.25
SHMT2-212ENST00000554467 NUP155O75694 1391 aa16.58■□□□□ 0.25
SHMT2-212ENST00000554467 CCDC141Q6ZP82 1450 aa16.56■□□□□ 0.24
SHMT2-212ENST00000554467 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.56■□□□□ 0.24
SHMT2-212ENST00000554467 ANP32EQ9BTT0 268 aa16.55■□□□□ 0.24
SHMT2-212ENST00000554467 UHRF1BP1LA0JNW5 1464 aa16.54■□□□□ 0.24
SHMT2-212ENST00000554467 SHANK2Q9UPX8 1470 aa16.54■□□□□ 0.24
SHMT2-212ENST00000554467 ZNF326Q5BKZ1 582 aaKnown RBP16.54■□□□□ 0.24
SHMT2-212ENST00000554467 MYO5CQ9NQX4 1742 aa16.53■□□□□ 0.24
SHMT2-212ENST00000554467 ARHGEF12Q9NZN5 1544 aa16.53■□□□□ 0.24
SHMT2-212ENST00000554467 NBPF8Q3BBV2 869 aa16.52■□□□□ 0.24
SHMT2-212ENST00000554467 EFCAB2Q5VUJ9 269 aa16.52■□□□□ 0.24
SHMT2-212ENST00000554467 ARHGEF5Q12774 1597 aa16.52■□□□□ 0.23
SHMT2-212ENST00000554467 AFAP1Q8N556 730 aa16.51■□□□□ 0.23
SHMT2-212ENST00000554467 RPRD2Q5VT52 1461 aaKnown RBP16.5■□□□□ 0.23
SHMT2-212ENST00000554467 PLCH2O75038 1416 aa16.5■□□□□ 0.23
SHMT2-212ENST00000554467 KIAA1107Q9UPP5 1409 aa16.49■□□□□ 0.23
SHMT2-212ENST00000554467 HSPA5P11021 654 aaKnown RBP16.49■□□□□ 0.23
SHMT2-212ENST00000554467 TRAPPC8Q9Y2L5 1435 aa16.48■□□□□ 0.23
SHMT2-212ENST00000554467 RSPH4AQ5TD94 716 aa16.48■□□□□ 0.23
SHMT2-212ENST00000554467 TSHZ2Q9NRE2 1034 aa16.47■□□□□ 0.23
SHMT2-212ENST00000554467 WDR7Q9Y4E6 1490 aa16.47■□□□□ 0.23
SHMT2-212ENST00000554467 MYT1LQ9UL68 1186 aa16.47■□□□□ 0.23
SHMT2-212ENST00000554467 SUPT16HQ9Y5B9 1047 aaKnown RBP16.46■□□□□ 0.23
SHMT2-212ENST00000554467 TEX14Q8IWB6 1497 aa16.45■□□□□ 0.22
SHMT2-212ENST00000554467 ASXL2Q76L83 1435 aa16.45■□□□□ 0.22
SHMT2-212ENST00000554467 PLEKHH2Q8IVE3 1493 aa16.45■□□□□ 0.22
SHMT2-212ENST00000554467 KDM2AQ9Y2K7 1162 aa16.44■□□□□ 0.22
SHMT2-212ENST00000554467 NPM1P06748 294 aaKnown RBP eCLIP16.44■□□□□ 0.22
SHMT2-212ENST00000554467 EIF4G2P78344 907 aaKnown RBP eCLIP16.42■□□□□ 0.22
SHMT2-212ENST00000554467 SPAG9O60271 1321 aaKnown RBP16.41■□□□□ 0.22
SHMT2-212ENST00000554467 ABCC1P33527 1531 aa16.4■□□□□ 0.22
SHMT2-212ENST00000554467 FAM135AQ9P2D6 1515 aa16.39■□□□□ 0.21
SHMT2-212ENST00000554467 C11orf95C9JLR9 678 aaPredicted RBP16.39■□□□□ 0.21
SHMT2-212ENST00000554467 RGL3Q3MIN7 710 aa16.39■□□□□ 0.21
SHMT2-212ENST00000554467 FANCAO15360 1455 aa16.39■□□□□ 0.21
SHMT2-212ENST00000554467 WASHC2AQ641Q2 1341 aa16.38■□□□□ 0.21
SHMT2-212ENST00000554467 CYB5RLQ6IPT4 315 aa16.36■□□□□ 0.21
SHMT2-212ENST00000554467 DCAF11Q8TEB1 546 aa16.36■□□□□ 0.21
SHMT2-212ENST00000554467 MAST1Q9Y2H9 1570 aa16.36■□□□□ 0.21
SHMT2-212ENST00000554467 KDM5DQ9BY66 1539 aa16.35■□□□□ 0.21
SHMT2-212ENST00000554467 SCAPERQ9BY12 1400 aa16.35■□□□□ 0.21
SHMT2-212ENST00000554467 POLR3GLQ9BT43 218 aa16.34■□□□□ 0.21
SHMT2-212ENST00000554467 ANP32CO43423 234 aa16.33■□□□□ 0.2
SHMT2-212ENST00000554467 ADGRL1O94910 1474 aa16.33■□□□□ 0.2
SHMT2-212ENST00000554467 PLXNC1O60486 1568 aa16.33■□□□□ 0.2
SHMT2-212ENST00000554467 DUOX2Q9NRD8 1548 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms