RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 PDCD7Q8N8D1 485 aaKnown RBP12.73□□□□□ -0.37
SCFD1-211ENST00000554437 DPY19L2Q6NUT2 758 aa12.72□□□□□ -0.37
SCFD1-211ENST00000554437 VSIG10Q8N0Z9 540 aa12.68□□□□□ -0.38
SCFD1-211ENST00000554437 MMRN1Q13201 1228 aa12.67□□□□□ -0.38
SCFD1-211ENST00000554437 SLAIN1Q8ND83 568 aa12.67□□□□□ -0.38
SCFD1-211ENST00000554437 G3V3G9 751 aa12.65□□□□□ -0.38
SCFD1-211ENST00000554437 SPNS2Q8IVW8 549 aa12.64□□□□□ -0.39
SCFD1-211ENST00000554437 CADPS2Q86UW7 1296 aa12.62□□□□□ -0.39
SCFD1-211ENST00000554437 L3MBTL3Q96JM7 780 aaPredicted RBP12.62□□□□□ -0.39
SCFD1-211ENST00000554437 KDM2AQ9Y2K7 1162 aa12.62□□□□□ -0.39
SCFD1-211ENST00000554437 BOLA1Q9Y3E2 137 aa12.62□□□□□ -0.39
SCFD1-211ENST00000554437 MICALL2Q8IY33 904 aa12.6□□□□□ -0.39
SCFD1-211ENST00000554437 TMEM121BQ9BXQ6 578 aaPredicted RBP12.55□□□□□ -0.4
SCFD1-211ENST00000554437 PDE4AP27815 886 aa12.51□□□□□ -0.41
SCFD1-211ENST00000554437 WDR70Q9NW82 654 aa12.51□□□□□ -0.41
SCFD1-211ENST00000554437 NCKAP5LQ9HCH0 1330 aa12.49□□□□□ -0.41
SCFD1-211ENST00000554437 C3orf67Q6ZVT6 689 aa12.48□□□□□ -0.41
SCFD1-211ENST00000554437 LARP6Q9BRS8 491 aaKnown RBP12.48□□□□□ -0.41
SCFD1-211ENST00000554437 CRISPLD2Q9H0B8 497 aa12.48□□□□□ -0.41
SCFD1-211ENST00000554437 TMC2Q8TDI7 906 aa12.46□□□□□ -0.41
SCFD1-211ENST00000554437 MARVELD3Q96A59 401 aa12.46□□□□□ -0.41
SCFD1-211ENST00000554437 GPHNQ9NQX3 736 aaPredicted RBP12.44□□□□□ -0.42
SCFD1-211ENST00000554437 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.43□□□□□ -0.42
SCFD1-211ENST00000554437 DDX27Q96GQ7 796 aaKnown RBP12.42□□□□□ -0.42
SCFD1-211ENST00000554437 C2orf72A6NCS6 295 aa12.4□□□□□ -0.42
SCFD1-211ENST00000554437 MFSD10Q14728 455 aa12.4□□□□□ -0.42
SCFD1-211ENST00000554437 TMEM92Q6UXU6 159 aa12.4□□□□□ -0.42
SCFD1-211ENST00000554437 KIF3CO14782 793 aa12.37□□□□□ -0.43
SCFD1-211ENST00000554437 SNPHO15079 494 aa12.37□□□□□ -0.43
SCFD1-211ENST00000554437 PPP1R15BQ5SWA1 713 aa12.37□□□□□ -0.43
SCFD1-211ENST00000554437 DSG2Q14126 1118 aa12.36□□□□□ -0.43
SCFD1-211ENST00000554437 FOXK1P85037 733 aa12.35□□□□□ -0.43
SCFD1-211ENST00000554437 E2F4Q16254 413 aa12.34□□□□□ -0.43
SCFD1-211ENST00000554437 P3H3Q8IVL6 736 aa12.33□□□□□ -0.44
SCFD1-211ENST00000554437 PLPP6Q8IY26 295 aa12.32□□□□□ -0.44
SCFD1-211ENST00000554437 KCNV2Q8TDN2 545 aa12.3□□□□□ -0.44
SCFD1-211ENST00000554437 POTEB3A0JP26 581 aa12.29□□□□□ -0.44
SCFD1-211ENST00000554437 POTEBQ6S5H4 581 aa12.29□□□□□ -0.44
SCFD1-211ENST00000554437 KRTAP3-3Q9BYR6 98 aa12.28□□□□□ -0.44
SCFD1-211ENST00000554437 KRTAP3-2Q9BYR7 98 aa12.28□□□□□ -0.44
SCFD1-211ENST00000554437 CAMK2BQ13554 666 aa12.26□□□□□ -0.45
SCFD1-211ENST00000554437 EMP3P54852 163 aa12.25□□□□□ -0.45
SCFD1-211ENST00000554437 BCANQ96GW7 911 aa12.23□□□□□ -0.45
SCFD1-211ENST00000554437 HS3ST6Q96QI5 342 aa12.23□□□□□ -0.45
SCFD1-211ENST00000554437 ARHGEF1Q92888 912 aaKnown RBP12.22□□□□□ -0.45
SCFD1-211ENST00000554437 NBR1Q14596 966 aa12.21□□□□□ -0.45
SCFD1-211ENST00000554437 EMILIN3Q9NT22 766 aa12.21□□□□□ -0.45
SCFD1-211ENST00000554437 FAM205CA6NFA0 338 aa12.2□□□□□ -0.46
SCFD1-211ENST00000554437 UPF1Q92900 1129 aaKnown RBP eCLIP12.19□□□□□ -0.46
SCFD1-211ENST00000554437 DPYSL4O14531 572 aa12.16□□□□□ -0.46
SCFD1-211ENST00000554437 ARIH1Q9Y4X5 557 aaPredicted RBP12.16□□□□□ -0.46
SCFD1-211ENST00000554437 MAP3K9P80192 1104 aa12.15□□□□□ -0.46
SCFD1-211ENST00000554437 OXER1Q8TDS5 423 aa12.14□□□□□ -0.47
SCFD1-211ENST00000554437 SLC34A2O95436 690 aa12.13□□□□□ -0.47
SCFD1-211ENST00000554437 DOK7Q18PE1 504 aa12.12□□□□□ -0.47
SCFD1-211ENST00000554437 TBC1D12O60347 775 aa12.11□□□□□ -0.47
SCFD1-211ENST00000554437 PTCD2Q8WV60 388 aaKnown RBP12.11□□□□□ -0.47
SCFD1-211ENST00000554437 HOXB3P14651 431 aaPredicted RBP12.09□□□□□ -0.47
SCFD1-211ENST00000554437 RIMBP2O15034 1052 aa12.08□□□□□ -0.48
SCFD1-211ENST00000554437 ZNF710Q8N1W2 664 aa12.08□□□□□ -0.48
SCFD1-211ENST00000554437 SPDYE16A6NNV3 312 aaPredicted RBP12.07□□□□□ -0.48
SCFD1-211ENST00000554437 PCDHGA4Q9Y5G9 962 aa12.07□□□□□ -0.48
SCFD1-211ENST00000554437 SEMA3EO15041 775 aa12.06□□□□□ -0.48
SCFD1-211ENST00000554437 PDIA6Q15084 440 aa12.06□□□□□ -0.48
SCFD1-211ENST00000554437 ZNF316A6NFI3 1004 aaPredicted RBP12.03□□□□□ -0.48
SCFD1-211ENST00000554437 EVI5O60447 810 aa12.03□□□□□ -0.48
SCFD1-211ENST00000554437 ARSIQ5FYB1 569 aa12.02□□□□□ -0.49
SCFD1-211ENST00000554437 ZSWIM6Q9HCJ5 1215 aa12.02□□□□□ -0.49
SCFD1-211ENST00000554437 TESPA1A2RU30 521 aaPredicted RBP12□□□□□ -0.49
SCFD1-211ENST00000554437 KHSRPQ92945 711 aaKnown RBP eCLIP11.99□□□□□ -0.493e-6■□□□□ 11.2
SCFD1-211ENST00000554437 GPR153Q6NV75 609 aa11.98□□□□□ -0.49
SCFD1-211ENST00000554437 TULP1O00294 542 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-211ENST00000554437 NUDT7P0C024 238 aa11.97□□□□□ -0.49
SCFD1-211ENST00000554437 MLLT3P42568 568 aaPredicted RBP11.97□□□□□ -0.49
SCFD1-211ENST00000554437 SMYD5Q6GMV2 418 aa11.96□□□□□ -0.49
SCFD1-211ENST00000554437 RNF166Q96A37 237 aaPredicted RBP11.96□□□□□ -0.49
SCFD1-211ENST00000554437 ANO8Q9HCE9 1232 aaPredicted RBP11.96□□□□□ -0.49
SCFD1-211ENST00000554437 GRXCR2A6NFK2 248 aa11.95□□□□□ -0.5
SCFD1-211ENST00000554437 DDX12PQ92771 950 aa11.95□□□□□ -0.5
SCFD1-211ENST00000554437 KDM4FA0A1W2PPD8 638 aa11.93□□□□□ -0.5
SCFD1-211ENST00000554437 HOXB1P14653 301 aaPredicted RBP11.93□□□□□ -0.5
SCFD1-211ENST00000554437 PTGER2P43116 358 aa11.93□□□□□ -0.5
SCFD1-211ENST00000554437 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.9□□□□□ -0.5
SCFD1-211ENST00000554437 ERBB3P21860 1342 aa11.88□□□□□ -0.51
SCFD1-211ENST00000554437 LMOD2Q6P5Q4 547 aa11.88□□□□□ -0.51
SCFD1-211ENST00000554437 LHX6Q9UPM6 363 aa11.87□□□□□ -0.51
SCFD1-211ENST00000554437 MYT1LQ9UL68 1186 aa11.86□□□□□ -0.51
SCFD1-211ENST00000554437 PHF14O94880 888 aa11.85□□□□□ -0.51
SCFD1-211ENST00000554437 ZNF454Q8N9F8 522 aa11.85□□□□□ -0.51
SCFD1-211ENST00000554437 JPH4Q96JJ6 628 aa11.85□□□□□ -0.51
SCFD1-211ENST00000554437 OSBPP22059 807 aa11.84□□□□□ -0.51
SCFD1-211ENST00000554437 RBM26Q5T8P6 1007 aaKnown RBP11.84□□□□□ -0.51
SCFD1-211ENST00000554437 EPAS1Q99814 870 aa11.84□□□□□ -0.51
SCFD1-211ENST00000554437 PCDHGA10Q9Y5H3 936 aa11.84□□□□□ -0.51
SCFD1-211ENST00000554437 FOSBP53539 338 aa11.83□□□□□ -0.52
SCFD1-211ENST00000554437 TYW1BQ6NUM6 668 aa11.82□□□□□ -0.52
SCFD1-211ENST00000554437 PSDA5PKW4 1024 aaPredicted RBP11.8□□□□□ -0.52
SCFD1-211ENST00000554437 VARS2Q5ST30 1063 aaKnown RBP11.8□□□□□ -0.52
SCFD1-211ENST00000554437 RBM33Q96EV2 1170 aaKnown RBP11.8□□□□□ -0.52
SCFD1-211ENST00000554437 PPP4R3BQ5MIZ7 849 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms