RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 EPRSP07814 1512 aaKnown RBP13.32□□□□□ -0.28
PSEN1-209ENST00000553855 KIF13AQ9H1H9 1805 aa13.31□□□□□ -0.28
PSEN1-209ENST00000553855 GLI2P10070 1586 aa13.31□□□□□ -0.28
PSEN1-209ENST00000553855 ILDR1Q86SU0 546 aaPredicted RBP13.3□□□□□ -0.28
PSEN1-209ENST00000553855 NUP153P49790 1475 aaKnown RBP13.29□□□□□ -0.28
PSEN1-209ENST00000553855 TEX14Q8IWB6 1497 aa13.28□□□□□ -0.28
PSEN1-209ENST00000553855 HECW1Q76N89 1606 aa13.28□□□□□ -0.28
PSEN1-209ENST00000553855 LOC105371045A0A1W2PR82 267 aa13.27□□□□□ -0.29
PSEN1-209ENST00000553855 CEP162Q5TB80 1403 aa13.26□□□□□ -0.29
PSEN1-209ENST00000553855 CD109Q6YHK3 1445 aa13.26□□□□□ -0.29
PSEN1-209ENST00000553855 CASKIN1Q8WXD9 1431 aa13.23□□□□□ -0.29
PSEN1-209ENST00000553855 TSPOAP1O95153 1857 aa13.23□□□□□ -0.29
PSEN1-209ENST00000553855 CCDC18Q5T9S5 1454 aa13.22□□□□□ -0.29
PSEN1-209ENST00000553855 CDK13Q14004 1512 aaKnown RBP13.21□□□□□ -0.29
PSEN1-209ENST00000553855 CFAP43Q8NDM7 1665 aa13.21□□□□□ -0.3
PSEN1-209ENST00000553855 KDM6BO15054 1643 aa13.21□□□□□ -0.3
PSEN1-209ENST00000553855 MAP3K4Q9Y6R4 1608 aa13.21□□□□□ -0.3
PSEN1-209ENST00000553855 FYCO1Q9BQS8 1478 aa13.2□□□□□ -0.3
PSEN1-209ENST00000553855 MAGI3Q5TCQ9 1506 aa13.19□□□□□ -0.3
PSEN1-209ENST00000553855 ZBTB12Q9Y330 459 aaPredicted RBP13.19□□□□□ -0.3
PSEN1-209ENST00000553855 PCF11O94913 1555 aaKnown RBP13.18□□□□□ -0.3
PSEN1-209ENST00000553855 PHLDB1Q86UU1 1377 aa13.17□□□□□ -0.3
PSEN1-209ENST00000553855 TROQ12816 1431 aaPredicted RBP13.16□□□□□ -0.3
PSEN1-209ENST00000553855 ABCA9Q8IUA7 1624 aa13.16□□□□□ -0.3
PSEN1-209ENST00000553855 PPRC1Q5VV67 1664 aaKnown RBP13.13□□□□□ -0.31
PSEN1-209ENST00000553855 MTUS2Q5JR59 1369 aa13.13□□□□□ -0.31
PSEN1-209ENST00000553855 FBXO3Q9UK99 471 aa13.13□□□□□ -0.31
PSEN1-209ENST00000553855 KIF14Q15058 1648 aa13.13□□□□□ -0.31
PSEN1-209ENST00000553855 SPDYE4A6NLX3 237 aa13.12□□□□□ -0.31
PSEN1-209ENST00000553855 NEO1Q92859 1461 aa13.11□□□□□ -0.31
PSEN1-209ENST00000553855 EFCAB2Q5VUJ9 269 aa13.11□□□□□ -0.31
PSEN1-209ENST00000553855 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.11□□□□□ -0.31
PSEN1-209ENST00000553855 VPS8Q8N3P4 1428 aa13.11□□□□□ -0.31
PSEN1-209ENST00000553855 CFAP74Q9C0B2 1584 aa13.09□□□□□ -0.31
PSEN1-209ENST00000553855 FANCAO15360 1455 aa13.09□□□□□ -0.31
PSEN1-209ENST00000553855 PLCH2O75038 1416 aa13.08□□□□□ -0.32
PSEN1-209ENST00000553855 MKRN4PQ13434 485 aaPredicted RBP13.08□□□□□ -0.32
PSEN1-209ENST00000553855 AKNAQ7Z591 1439 aa13.07□□□□□ -0.32
PSEN1-209ENST00000553855 ARAP3Q8WWN8 1544 aa13.07□□□□□ -0.32
PSEN1-209ENST00000553855 TTC37Q6PGP7 1564 aa13.07□□□□□ -0.32
PSEN1-209ENST00000553855 DENND4BO75064 1496 aaPredicted RBP13.05□□□□□ -0.32
PSEN1-209ENST00000553855 COL17A1Q9UMD9 1497 aaPredicted RBP13.05□□□□□ -0.32
PSEN1-209ENST00000553855 ARHGAP5Q13017 1502 aa13.05□□□□□ -0.32
PSEN1-209ENST00000553855 LRRIQ1Q96JM4 1722 aa13.05□□□□□ -0.32
PSEN1-209ENST00000553855 RAPGEF3O95398 923 aa13.04□□□□□ -0.32
PSEN1-209ENST00000553855 CCNB3Q8WWL7 1395 aa13.04□□□□□ -0.32
PSEN1-209ENST00000553855 MYO5CQ9NQX4 1742 aa13.03□□□□□ -0.32
PSEN1-209ENST00000553855 PROM2Q8N271 834 aa13.03□□□□□ -0.32
PSEN1-209ENST00000553855 MYT1LQ9UL68 1186 aa13.03□□□□□ -0.32
PSEN1-209ENST00000553855 ADGRL1O94910 1474 aa13.03□□□□□ -0.32
PSEN1-209ENST00000553855 EHBP1L1Q8N3D4 1523 aa13.03□□□□□ -0.32
PSEN1-209ENST00000553855 ZNF777Q9ULD5 760 aaPredicted RBP13.02□□□□□ -0.33
PSEN1-209ENST00000553855 SCAPERQ9BY12 1400 aa13.02□□□□□ -0.33
PSEN1-209ENST00000553855 CFDP1Q9UEE9 299 aaPredicted RBP13.01□□□□□ -0.33
PSEN1-209ENST00000553855 TIAM1Q13009 1591 aa12.98□□□□□ -0.33
PSEN1-209ENST00000553855 ARID4BQ4LE39 1312 aaPredicted RBP12.97□□□□□ -0.33
PSEN1-209ENST00000553855 MAP3K1Q13233 1512 aa12.97□□□□□ -0.33
PSEN1-209ENST00000553855 PREX2Q70Z35 1606 aa12.96□□□□□ -0.33
PSEN1-209ENST00000553855 POGZQ7Z3K3 1410 aa12.96□□□□□ -0.34
PSEN1-209ENST00000553855 GPATCH8Q9UKJ3 1502 aaKnown RBP12.95□□□□□ -0.34
PSEN1-209ENST00000553855 SUPT6HQ7KZ85 1726 aaKnown RBP12.95□□□□□ -0.34
PSEN1-209ENST00000553855 ZNF518AQ6AHZ1 1483 aa12.95□□□□□ -0.34
PSEN1-209ENST00000553855 LRRC9Q6ZRR7 1453 aa12.95□□□□□ -0.34
PSEN1-209ENST00000553855 PLEKHH2Q8IVE3 1493 aa12.95□□□□□ -0.34
PSEN1-209ENST00000553855 NCOA2Q15596 1464 aa12.94□□□□□ -0.34
PSEN1-209ENST00000553855 MAGI2Q86UL8 1455 aa12.94□□□□□ -0.34
PSEN1-209ENST00000553855 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
PSEN1-209ENST00000553855 VASPP50552 380 aaPredicted RBP12.92□□□□□ -0.34
PSEN1-209ENST00000553855 AFAP1Q8N556 730 aa12.92□□□□□ -0.34
PSEN1-209ENST00000553855 ITSN2Q9NZM3 1697 aa12.92□□□□□ -0.34
PSEN1-209ENST00000553855 ZFYVE16Q7Z3T8 1539 aa12.92□□□□□ -0.34
PSEN1-209ENST00000553855 CDC42BPAQ5VT25 1732 aa12.91□□□□□ -0.34
PSEN1-209ENST00000553855 CDC42BPBQ9Y5S2 1711 aa12.91□□□□□ -0.34
PSEN1-209ENST00000553855 HNRNPMP52272 730 aaKnown RBP eCLIP12.91□□□□□ -0.34
PSEN1-209ENST00000553855 KANK4Q5T7N3 995 aaPredicted RBP12.91□□□□□ -0.34
PSEN1-209ENST00000553855 FRMPD1Q5SYB0 1578 aa12.9□□□□□ -0.34
PSEN1-209ENST00000553855 ABCC1P33527 1531 aa12.9□□□□□ -0.34
PSEN1-209ENST00000553855 ZMYM4Q5VZL5 1548 aa12.9□□□□□ -0.34
PSEN1-209ENST00000553855 RICTORQ6R327 1708 aa12.9□□□□□ -0.34
PSEN1-209ENST00000553855 KIAA1107Q9UPP5 1409 aa12.89□□□□□ -0.35
PSEN1-209ENST00000553855 RSPH4AQ5TD94 716 aa12.89□□□□□ -0.35
PSEN1-209ENST00000553855 SPAG9O60271 1321 aaKnown RBP12.88□□□□□ -0.35
PSEN1-209ENST00000553855 ARHGEF40Q8TER5 1519 aa12.88□□□□□ -0.35
PSEN1-209ENST00000553855 KDM4FA0A1W2PPD8 638 aa12.87□□□□□ -0.35
PSEN1-209ENST00000553855 SYCP2Q9BX26 1530 aa12.87□□□□□ -0.35
PSEN1-209ENST00000553855 TRAPPC8Q9Y2L5 1435 aa12.87□□□□□ -0.35
PSEN1-209ENST00000553855 SAMD9LQ8IVG5 1584 aa12.86□□□□□ -0.35
PSEN1-209ENST00000553855 ATP10AO60312 1499 aa12.86□□□□□ -0.35
PSEN1-209ENST00000553855 TSPY4P0CV99 314 aa12.86□□□□□ -0.35
PSEN1-209ENST00000553855 TSPY10P0CW01 314 aa12.86□□□□□ -0.35
PSEN1-209ENST00000553855 C9orf84Q5VXU9 1444 aa12.86□□□□□ -0.35
PSEN1-209ENST00000553855 YEATS2Q9ULM3 1422 aa12.86□□□□□ -0.35
PSEN1-209ENST00000553855 ZNF644Q9H582 1327 aaPredicted RBP12.86□□□□□ -0.35
PSEN1-209ENST00000553855 MLH3Q9UHC1 1453 aa12.85□□□□□ -0.35
PSEN1-209ENST00000553855 ARHGEF12Q9NZN5 1544 aa12.85□□□□□ -0.35
PSEN1-209ENST00000553855 MYOM3Q5VTT5 1437 aa12.85□□□□□ -0.35
PSEN1-209ENST00000553855 KDM5CP41229 1560 aa12.85□□□□□ -0.35
PSEN1-209ENST00000553855 HECW2Q9P2P5 1572 aa12.85□□□□□ -0.35
PSEN1-209ENST00000553855 MLECQ14165 292 aa12.84□□□□□ -0.35
PSEN1-209ENST00000553855 ESF1Q9H501 851 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms