RNA–Protein interactions for RNA: ENST00000553570.5

ATXN3-222, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-222ENST00000553570 KIF3CO14782 793 aa10.16□□□□□ -0.78
ATXN3-222ENST00000553570 RYDENQ9NUL5 291 aaKnown RBP10.16□□□□□ -0.78
ATXN3-222ENST00000553570 HOXB3P14651 431 aaPredicted RBP10.12□□□□□ -0.79
ATXN3-222ENST00000553570 FAM163AQ96GL9 167 aaPredicted RBP10.12□□□□□ -0.79
ATXN3-222ENST00000553570 C2orf72A6NCS6 295 aa10.1□□□□□ -0.79
ATXN3-222ENST00000553570 ST18O60284 1047 aa10.1□□□□□ -0.79
ATXN3-222ENST00000553570 SNPHO15079 494 aa10.09□□□□□ -0.79
ATXN3-222ENST00000553570 GPHNQ9NQX3 736 aaPredicted RBP10.04□□□□□ -0.8
ATXN3-222ENST00000553570 SPRYD3Q8NCJ5 442 aa10.03□□□□□ -0.8
ATXN3-222ENST00000553570 CRISPLD2Q9H0B8 497 aa10.03□□□□□ -0.8
ATXN3-222ENST00000553570 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.03□□□□□ -0.8
ATXN3-222ENST00000553570 PCDH10Q9P2E7 1040 aa10.03□□□□□ -0.8
ATXN3-222ENST00000553570 NCKAP5LQ9HCH0 1330 aa10.03□□□□□ -0.8
ATXN3-222ENST00000553570 CADPS2Q86UW7 1296 aa10.02□□□□□ -0.81
ATXN3-222ENST00000553570 TMC2Q8TDI7 906 aa10.02□□□□□ -0.81
ATXN3-222ENST00000553570 FOXK1P85037 733 aa10.01□□□□□ -0.81
ATXN3-222ENST00000553570 DOK7Q18PE1 504 aa10□□□□□ -0.81
ATXN3-222ENST00000553570 PAXIP1Q6ZW49 1069 aaPredicted RBP9.99□□□□□ -0.81
ATXN3-222ENST00000553570 DSG2Q14126 1118 aa9.98□□□□□ -0.81
ATXN3-222ENST00000553570 GPR153Q6NV75 609 aa9.97□□□□□ -0.81
ATXN3-222ENST00000553570 SLC34A2O95436 690 aa9.96□□□□□ -0.82
ATXN3-222ENST00000553570 HOXB1P14653 301 aaPredicted RBP9.96□□□□□ -0.82
ATXN3-222ENST00000553570 CFAP44Q96MT7 982 aa9.96□□□□□ -0.82
ATXN3-222ENST00000553570 ZSWIM6Q9HCJ5 1215 aa9.96□□□□□ -0.82
ATXN3-222ENST00000553570 PLPP6Q8IY26 295 aa9.95□□□□□ -0.82
ATXN3-222ENST00000553570 PDE4AP27815 886 aa9.94□□□□□ -0.82
ATXN3-222ENST00000553570 MFSD10Q14728 455 aa9.94□□□□□ -0.82
ATXN3-222ENST00000553570 MARVELD3Q96A59 401 aa9.94□□□□□ -0.82
ATXN3-222ENST00000553570 ZNF710Q8N1W2 664 aa9.93□□□□□ -0.82
ATXN3-222ENST00000553570 POTEB3A0JP26 581 aa9.91□□□□□ -0.82
ATXN3-222ENST00000553570 RIMBP2O15034 1052 aa9.91□□□□□ -0.82
ATXN3-222ENST00000553570 ARSIQ5FYB1 569 aa9.91□□□□□ -0.82
ATXN3-222ENST00000553570 POTEBQ6S5H4 581 aa9.91□□□□□ -0.82
ATXN3-222ENST00000553570 LARP6Q9BRS8 491 aaKnown RBP9.91□□□□□ -0.82
ATXN3-222ENST00000553570 PLCB2Q00722 1185 aa9.9□□□□□ -0.82
ATXN3-222ENST00000553570 PPP1R15BQ5SWA1 713 aa9.9□□□□□ -0.82
ATXN3-222ENST00000553570 PTCD2Q8WV60 388 aaKnown RBP9.9□□□□□ -0.82
ATXN3-222ENST00000553570 KHSRPQ92945 711 aaKnown RBP eCLIP9.9□□□□□ -0.82
ATXN3-222ENST00000553570 KDM4FA0A1W2PPD8 638 aa9.88□□□□□ -0.83
ATXN3-222ENST00000553570 EMP3P54852 163 aa9.88□□□□□ -0.83
ATXN3-222ENST00000553570 DDX27Q96GQ7 796 aaKnown RBP9.88□□□□□ -0.83
ATXN3-222ENST00000553570 PCDHGA4Q9Y5G9 962 aa9.88□□□□□ -0.83
ATXN3-222ENST00000553570 OXER1Q8TDS5 423 aa9.85□□□□□ -0.83
ATXN3-222ENST00000553570 HS3ST6Q96QI5 342 aa9.84□□□□□ -0.83
ATXN3-222ENST00000553570 FAM205CA6NFA0 338 aa9.83□□□□□ -0.84
ATXN3-222ENST00000553570 TSHZ2Q9NRE2 1034 aa9.83□□□□□ -0.84
ATXN3-222ENST00000553570 NUDT7P0C024 238 aa9.82□□□□□ -0.84
ATXN3-222ENST00000553570 CAMK2BQ13554 666 aa9.82□□□□□ -0.84
ATXN3-222ENST00000553570 CDAN1Q8IWY9 1227 aa9.81□□□□□ -0.84
ATXN3-222ENST00000553570 EMILIN3Q9NT22 766 aa9.81□□□□□ -0.84
ATXN3-222ENST00000553570 ERBB3P21860 1342 aa9.8□□□□□ -0.84
ATXN3-222ENST00000553570 ZNF316A6NFI3 1004 aaPredicted RBP9.79□□□□□ -0.84
ATXN3-222ENST00000553570 VARS2Q5ST30 1063 aaKnown RBP9.77□□□□□ -0.85
ATXN3-222ENST00000553570 UPF1Q92900 1129 aaKnown RBP eCLIP9.77□□□□□ -0.85
ATXN3-222ENST00000553570 LHX6Q9UPM6 363 aa9.77□□□□□ -0.85
ATXN3-222ENST00000553570 TBC1D12O60347 775 aa9.76□□□□□ -0.85
ATXN3-222ENST00000553570 HAP1P54257 671 aaPredicted RBP9.75□□□□□ -0.85
ATXN3-222ENST00000553570 KRTAP3-3Q9BYR6 98 aa9.74□□□□□ -0.85
ATXN3-222ENST00000553570 KRTAP3-2Q9BYR7 98 aa9.74□□□□□ -0.85
ATXN3-222ENST00000553570 ANO8Q9HCE9 1232 aaPredicted RBP9.74□□□□□ -0.85
ATXN3-222ENST00000553570 ZNF687Q8N1G0 1237 aa9.73□□□□□ -0.85
ATXN3-222ENST00000553570 CCDC180Q9P1Z9 1646 aa9.71□□□□□ -0.85
ATXN3-222ENST00000553570 EVI5O60447 810 aa9.7□□□□□ -0.86
ATXN3-222ENST00000553570 POTEEQ6S8J3 1075 aa9.7□□□□□ -0.86
ATXN3-222ENST00000553570 MAP3K9P80192 1104 aa9.69□□□□□ -0.86
ATXN3-222ENST00000553570 E2F4Q16254 413 aa9.68□□□□□ -0.86
ATXN3-222ENST00000553570 ARIH1Q9Y4X5 557 aaPredicted RBP9.68□□□□□ -0.86
ATXN3-222ENST00000553570 DPYSL4O14531 572 aa9.67□□□□□ -0.86
ATXN3-222ENST00000553570 WDR70Q9NW82 654 aa9.67□□□□□ -0.86
ATXN3-222ENST00000553570 PSDA5PKW4 1024 aaPredicted RBP9.65□□□□□ -0.86
ATXN3-222ENST00000553570 FOSBP53539 338 aa9.64□□□□□ -0.87
ATXN3-222ENST00000553570 PDIA6Q15084 440 aa9.61□□□□□ -0.87
ATXN3-222ENST00000553570 VSIG10Q8N0Z9 540 aa9.61□□□□□ -0.87
ATXN3-222ENST00000553570 JPH4Q96JJ6 628 aa9.61□□□□□ -0.87
ATXN3-222ENST00000553570 PTGER2P43116 358 aa9.6□□□□□ -0.87
ATXN3-222ENST00000553570 PPP4R3BQ5MIZ7 849 aa9.6□□□□□ -0.87
ATXN3-222ENST00000553570 ZNF454Q8N9F8 522 aa9.6□□□□□ -0.87
ATXN3-222ENST00000553570 KDM2AQ9Y2K7 1162 aa9.6□□□□□ -0.87
ATXN3-222ENST00000553570 AXIN2Q9Y2T1 843 aa9.6□□□□□ -0.87
ATXN3-222ENST00000553570 PBX2P40425 430 aa9.59□□□□□ -0.87
ATXN3-222ENST00000553570 SPNS2Q8IVW8 549 aa9.59□□□□□ -0.87
ATXN3-222ENST00000553570 KCNV2Q8TDN2 545 aa9.59□□□□□ -0.87
ATXN3-222ENST00000553570 PCDHGA10Q9Y5H3 936 aa9.59□□□□□ -0.87
ATXN3-222ENST00000553570 ABCC9O60706 1549 aa9.58□□□□□ -0.88
ATXN3-222ENST00000553570 SPDYE16A6NNV3 312 aaPredicted RBP9.57□□□□□ -0.88
ATXN3-222ENST00000553570 ARHGAP33O14559 1287 aa9.56□□□□□ -0.88
ATXN3-222ENST00000553570 BCL2L12Q9HB09 334 aa9.56□□□□□ -0.88
ATXN3-222ENST00000553570 PHF14O94880 888 aa9.55□□□□□ -0.88
ATXN3-222ENST00000553570 PSEN2P49810 448 aa9.55□□□□□ -0.88
ATXN3-222ENST00000553570 LSM11P83369 360 aaKnown RBP eCLIP9.55□□□□□ -0.88
ATXN3-222ENST00000553570 ARHGEF1Q92888 912 aaKnown RBP9.55□□□□□ -0.88
ATXN3-222ENST00000553570 ZDHHC16Q969W1 377 aa9.55□□□□□ -0.88
ATXN3-222ENST00000553570 ADAM33Q9BZ11 813 aa9.55□□□□□ -0.88
ATXN3-222ENST00000553570 DMRTA1Q5VZB9 504 aa9.54□□□□□ -0.88
ATXN3-222ENST00000553570 DDX12PQ92771 950 aa9.52□□□□□ -0.89
ATXN3-222ENST00000553570 MMRN1Q13201 1228 aa9.51□□□□□ -0.89
ATXN3-222ENST00000553570 TYW1BQ6NUM6 668 aa9.51□□□□□ -0.89
ATXN3-222ENST00000553570 ANKRD13DQ6ZTN6 518 aa9.51□□□□□ -0.89
ATXN3-222ENST00000553570 PRIM1P49642 420 aaKnown RBP9.5□□□□□ -0.89
ATXN3-222ENST00000553570 FBXW7Q969H0 707 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms