RNA–Protein interactions for RNA: ENST00000553405.1

MTHFD1-204, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 2

Gene MTHFD1, Length 833 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-204ENST00000553405 PHLDB1Q86UU1 1377 aa23.2■■□□□ 1.3
MTHFD1-204ENST00000553405 CCNB3Q8WWL7 1395 aa23.2■■□□□ 1.3
MTHFD1-204ENST00000553405 ITSN2Q9NZM3 1697 aa23.19■■□□□ 1.3
MTHFD1-204ENST00000553405 CFAP74Q9C0B2 1584 aa23.18■■□□□ 1.3
MTHFD1-204ENST00000553405 ARHGAP5Q13017 1502 aa23.18■■□□□ 1.3
MTHFD1-204ENST00000553405 MYOM3Q5VTT5 1437 aa23.16■■□□□ 1.3
MTHFD1-204ENST00000553405 AKNAQ7Z591 1439 aa23.16■■□□□ 1.3
MTHFD1-204ENST00000553405 SAMD9LQ8IVG5 1584 aa23.15■■□□□ 1.3
MTHFD1-204ENST00000553405 EFCAB2Q5VUJ9 269 aa23.13■■□□□ 1.29
MTHFD1-204ENST00000553405 ABCC1P33527 1531 aa23.13■■□□□ 1.29
MTHFD1-204ENST00000553405 PPARGC1BQ86YN6 1023 aaKnown RBP23.12■■□□□ 1.29
MTHFD1-204ENST00000553405 ARHGEF12Q9NZN5 1544 aa23.12■■□□□ 1.29
MTHFD1-204ENST00000553405 FRMPD1Q5SYB0 1578 aa23.1■■□□□ 1.29
MTHFD1-204ENST00000553405 MIA2Q96PC5 1412 aa23.1■■□□□ 1.29
MTHFD1-204ENST00000553405 CFDP1Q9UEE9 299 aaPredicted RBP23.1■■□□□ 1.29
MTHFD1-204ENST00000553405 KDM6BO15054 1643 aa23.09■■□□□ 1.29
MTHFD1-204ENST00000553405 ADGRL1O94910 1474 aa23.09■■□□□ 1.29
MTHFD1-204ENST00000553405 FGD6Q6ZV73 1430 aa23.08■■□□□ 1.28
MTHFD1-204ENST00000553405 ZNF644Q9H582 1327 aaPredicted RBP23.08■■□□□ 1.28
MTHFD1-204ENST00000553405 RICTORQ6R327 1708 aa23.07■■□□□ 1.28
MTHFD1-204ENST00000553405 KIAA1107Q9UPP5 1409 aa23.07■■□□□ 1.28
MTHFD1-204ENST00000553405 SCAPERQ9BY12 1400 aa23.06■■□□□ 1.28
MTHFD1-204ENST00000553405 CAMSAP2Q08AD1 1489 aa23.05■■□□□ 1.28
MTHFD1-204ENST00000553405 MBD5Q9P267 1494 aa23.05■■□□□ 1.28
MTHFD1-204ENST00000553405 TCOF1Q13428 1488 aaKnown RBP23.05■■□□□ 1.28
MTHFD1-204ENST00000553405 POGZQ7Z3K3 1410 aa23.04■■□□□ 1.28
MTHFD1-204ENST00000553405 SYCP2Q9BX26 1530 aa23.03■■□□□ 1.28
MTHFD1-204ENST00000553405 DENND4BO75064 1496 aaPredicted RBP23.03■■□□□ 1.28
MTHFD1-204ENST00000553405 PLEKHH2Q8IVE3 1493 aa23.03■■□□□ 1.28
MTHFD1-204ENST00000553405 PTPN23Q9H3S7 1636 aa23.02■■□□□ 1.28
MTHFD1-204ENST00000553405 TRAPPC8Q9Y2L5 1435 aa23.01■■□□□ 1.27
MTHFD1-204ENST00000553405 KDM5CP41229 1560 aa23.01■■□□□ 1.27
MTHFD1-204ENST00000553405 ZNF777Q9ULD5 760 aaPredicted RBP23■■□□□ 1.27
MTHFD1-204ENST00000553405 ZMYM4Q5VZL5 1548 aa22.99■■□□□ 1.27
MTHFD1-204ENST00000553405 RAPGEF3O95398 923 aa22.99■■□□□ 1.27
MTHFD1-204ENST00000553405 ARHGEF5Q12774 1597 aa22.98■■□□□ 1.27
MTHFD1-204ENST00000553405 RRBP1Q9P2E9 1410 aaKnown RBP22.96■■□□□ 1.27
MTHFD1-204ENST00000553405 ZNF518AQ6AHZ1 1483 aa22.96■■□□□ 1.27
MTHFD1-204ENST00000553405 HNRNPMP52272 730 aaKnown RBP eCLIP22.95■■□□□ 1.26
MTHFD1-204ENST00000553405 AFAP1Q8N556 730 aa22.94■■□□□ 1.26
MTHFD1-204ENST00000553405 CCDC141Q6ZP82 1450 aa22.91■■□□□ 1.26
MTHFD1-204ENST00000553405 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.9■■□□□ 1.26
MTHFD1-204ENST00000553405 MLH3Q9UHC1 1453 aa22.9■■□□□ 1.26
MTHFD1-204ENST00000553405 DNMT1P26358 1616 aaKnown RBP22.9■■□□□ 1.26
MTHFD1-204ENST00000553405 INO80Q9ULG1 1556 aaPredicted RBP22.89■■□□□ 1.26
MTHFD1-204ENST00000553405 ABCC5O15440 1437 aa22.89■■□□□ 1.25
MTHFD1-204ENST00000553405 HECW2Q9P2P5 1572 aa22.89■■□□□ 1.25
MTHFD1-204ENST00000553405 MAGI2Q86UL8 1455 aa22.88■■□□□ 1.25
MTHFD1-204ENST00000553405 KIDINS220Q9ULH0 1771 aa22.88■■□□□ 1.25
MTHFD1-204ENST00000553405 ZFYVE16Q7Z3T8 1539 aa22.87■■□□□ 1.25
MTHFD1-204ENST00000553405 CROCC2H7BZ55 1655 aa22.87■■□□□ 1.25
MTHFD1-204ENST00000553405 YEATS2Q9ULM3 1422 aa22.86■■□□□ 1.25
MTHFD1-204ENST00000553405 ARHGEF40Q8TER5 1519 aa22.86■■□□□ 1.25
MTHFD1-204ENST00000553405 MAST1Q9Y2H9 1570 aa22.85■■□□□ 1.25
MTHFD1-204ENST00000553405 DAPK1P53355 1430 aa22.85■■□□□ 1.25
MTHFD1-204ENST00000553405 RSPH4AQ5TD94 716 aa22.84■■□□□ 1.25
MTHFD1-204ENST00000553405 SHANK2Q9UPX8 1470 aa22.84■■□□□ 1.25
MTHFD1-204ENST00000553405 RTEL1-TNFRSF6BF6WH68 1400 aa22.82■■□□□ 1.24
MTHFD1-204ENST00000553405 PTPRKQ15262 1439 aa22.82■■□□□ 1.24
MTHFD1-204ENST00000553405 ATP7AQ04656 1500 aa22.82■■□□□ 1.24
MTHFD1-204ENST00000553405 ABCA6Q8N139 1617 aa22.82■■□□□ 1.24
MTHFD1-204ENST00000553405 DIP2CQ9Y2E4 1556 aa22.82■■□□□ 1.24
MTHFD1-204ENST00000553405 FAM50AQ14320 339 aaKnown RBP22.8■■□□□ 1.24
MTHFD1-204ENST00000553405 SPAG9O60271 1321 aaKnown RBP22.8■■□□□ 1.24
MTHFD1-204ENST00000553405 C9orf84Q5VXU9 1444 aa22.79■■□□□ 1.24
MTHFD1-204ENST00000553405 SIGLEC1Q9BZZ2 1709 aa22.78■■□□□ 1.24
MTHFD1-204ENST00000553405 REREQ9P2R6 1566 aa22.76■■□□□ 1.23
MTHFD1-204ENST00000553405 PLXNC1O60486 1568 aa22.76■■□□□ 1.23
MTHFD1-204ENST00000553405 ADGRL2O95490 1459 aa22.75■■□□□ 1.23
MTHFD1-204ENST00000553405 ATP10AO60312 1499 aa22.74■■□□□ 1.23
MTHFD1-204ENST00000553405 ADGBQ8N7X0 1667 aa22.74■■□□□ 1.23
MTHFD1-204ENST00000553405 TSPY4P0CV99 314 aa22.71■■□□□ 1.23
MTHFD1-204ENST00000553405 TSPY10P0CW01 314 aa22.71■■□□□ 1.23
MTHFD1-204ENST00000553405 NCOA1Q15788 1441 aa22.7■■□□□ 1.22
MTHFD1-204ENST00000553405 AGLP35573 1532 aa22.67■■□□□ 1.22
MTHFD1-204ENST00000553405 A2MP01023 1474 aa22.66■■□□□ 1.22
MTHFD1-204ENST00000553405 ROCK1Q13464 1354 aa22.66■■□□□ 1.22
MTHFD1-204ENST00000553405 DHX29Q7Z478 1369 aaKnown RBP22.64■■□□□ 1.22
MTHFD1-204ENST00000553405 CHIC2Q9UKJ5 165 aa22.64■■□□□ 1.21
MTHFD1-204ENST00000553405 KIF15Q9NS87 1388 aa22.63■■□□□ 1.21
MTHFD1-204ENST00000553405 ANKRD30AQ9BXX3 1397 aa22.63■■□□□ 1.21
MTHFD1-204ENST00000553405 BCORL1Q5H9F3 1711 aa22.62■■□□□ 1.21
MTHFD1-204ENST00000553405 DUOX2Q9NRD8 1548 aa22.62■■□□□ 1.21
MTHFD1-204ENST00000553405 ITGAEP38570 1179 aa22.6■■□□□ 1.21
MTHFD1-204ENST00000553405 MYT1LQ9UL68 1186 aa22.6■■□□□ 1.21
MTHFD1-204ENST00000553405 EIF2AK4Q9P2K8 1649 aaKnown RBP22.57■■□□□ 1.2
MTHFD1-204ENST00000553405 RRP7BPQ9NSQ0 103 aa22.57■■□□□ 1.2
MTHFD1-204ENST00000553405 ERBINQ96RT1 1412 aa22.57■■□□□ 1.2
MTHFD1-204ENST00000553405 NAIPQ13075 1403 aa22.55■■□□□ 1.2
MTHFD1-204ENST00000553405 MROH1Q8NDA8 1641 aa22.54■■□□□ 1.2
MTHFD1-204ENST00000553405 HFM1A2PYH4 1435 aa22.54■■□□□ 1.2
MTHFD1-204ENST00000553405 RNF17Q9BXT8 1623 aaKnown RBP22.53■■□□□ 1.2
MTHFD1-204ENST00000553405 ADAMTSL3P82987 1691 aa22.53■■□□□ 1.2
MTHFD1-204ENST00000553405 GCC2Q8IWJ2 1684 aa22.53■■□□□ 1.2
MTHFD1-204ENST00000553405 ANKRD50Q9ULJ7 1429 aa22.51■■□□□ 1.19
MTHFD1-204ENST00000553405 DEPDC5O75140 1603 aa22.51■■□□□ 1.19
MTHFD1-204ENST00000553405 PRDM15P57071 1507 aaPredicted RBP22.47■■□□□ 1.19
MTHFD1-204ENST00000553405 KIF3BO15066 747 aa22.46■■□□□ 1.19
MTHFD1-204ENST00000553405 ARID4BQ4LE39 1312 aaPredicted RBP22.46■■□□□ 1.19
MTHFD1-204ENST00000553405 KDM4FA0A1W2PPD8 638 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms