RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

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Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ZBED9Q6R2W3 1325 aa24.09■■□□□ 1.45
SYNE3-202ENST00000553340 FOXD1Q16676 465 aa24.08■■□□□ 1.44
SYNE3-202ENST00000553340 ERICH6Q7L0X2 663 aa24.07■■□□□ 1.44
SYNE3-202ENST00000553340 PDS5BQ9NTI5 1447 aa24.07■■□□□ 1.44
SYNE3-202ENST00000553340 RPRD2Q5VT52 1461 aaKnown RBP24.07■■□□□ 1.44
SYNE3-202ENST00000553340 ANKRD30BQ9BXX2 1392 aa24.06■■□□□ 1.44
SYNE3-202ENST00000553340 CDK13Q14004 1512 aaKnown RBP24.04■■□□□ 1.44
SYNE3-202ENST00000553340 IQGAP2Q13576 1575 aa24.04■■□□□ 1.44
SYNE3-202ENST00000553340 ROCK1Q13464 1354 aa24.04■■□□□ 1.44
SYNE3-202ENST00000553340 NBPF8Q3BBV2 869 aa24.02■■□□□ 1.44
SYNE3-202ENST00000553340 TEX14Q8IWB6 1497 aa24.02■■□□□ 1.44
SYNE3-202ENST00000553340 TARBP1Q13395 1621 aaKnown RBP24.01■■□□□ 1.43
SYNE3-202ENST00000553340 WDR62O43379 1518 aa24.01■■□□□ 1.43
SYNE3-202ENST00000553340 DAPK1P53355 1430 aa24■■□□□ 1.43
SYNE3-202ENST00000553340 KIF7Q2M1P5 1343 aa24■■□□□ 1.43
SYNE3-202ENST00000553340 SPATA31E1Q6ZUB1 1445 aa23.99■■□□□ 1.43
SYNE3-202ENST00000553340 POLR1AO95602 1720 aaPredicted RBP23.99■■□□□ 1.43
SYNE3-202ENST00000553340 B4GALNT3Q6L9W6 998 aa23.97■■□□□ 1.43
SYNE3-202ENST00000553340 PBRM1Q86U86 1689 aa23.96■■□□□ 1.43
SYNE3-202ENST00000553340 ARID3CA6NKF2 412 aa23.95■■□□□ 1.42
SYNE3-202ENST00000553340 SLC4A1APQ9BWU0 796 aaKnown RBP23.95■■□□□ 1.42
SYNE3-202ENST00000553340 DNMT1P26358 1616 aaKnown RBP23.95■■□□□ 1.42
SYNE3-202ENST00000553340 ABCC5O15440 1437 aa23.94■■□□□ 1.42
SYNE3-202ENST00000553340 ADAMTS12P58397 1594 aa23.91■■□□□ 1.42
SYNE3-202ENST00000553340 SMG6Q86US8 1419 aaKnown RBP23.86■■□□□ 1.41
SYNE3-202ENST00000553340 ZNF644Q9H582 1327 aaPredicted RBP23.86■■□□□ 1.41
SYNE3-202ENST00000553340 MYT1LQ9UL68 1186 aa23.85■■□□□ 1.41
SYNE3-202ENST00000553340 DHX29Q7Z478 1369 aaKnown RBP23.82■■□□□ 1.4
SYNE3-202ENST00000553340 PZPP20742 1482 aa23.81■■□□□ 1.4
SYNE3-202ENST00000553340 NUDCQ9Y266 331 aa23.8■■□□□ 1.4
SYNE3-202ENST00000553340 MBD5Q9P267 1494 aa23.79■■□□□ 1.4
SYNE3-202ENST00000553340 NUP153P49790 1475 aaKnown RBP23.78■■□□□ 1.4
SYNE3-202ENST00000553340 USP47Q96K76 1375 aa23.78■■□□□ 1.4
SYNE3-202ENST00000553340 ARID4BQ4LE39 1312 aaPredicted RBP23.77■■□□□ 1.4
SYNE3-202ENST00000553340 KIAA0556O60303 1618 aa23.77■■□□□ 1.4
SYNE3-202ENST00000553340 RNF123Q5XPI4 1314 aa23.76■■□□□ 1.39
SYNE3-202ENST00000553340 KIAA1107Q9UPP5 1409 aa23.75■■□□□ 1.39
SYNE3-202ENST00000553340 RAPGEF6Q8TEU7 1601 aa23.75■■□□□ 1.39
SYNE3-202ENST00000553340 DISP1Q96F81 1524 aa23.74■■□□□ 1.39
SYNE3-202ENST00000553340 POLR3GLQ9BT43 218 aa23.74■■□□□ 1.39
SYNE3-202ENST00000553340 BCORL1Q5H9F3 1711 aa23.74■■□□□ 1.39
SYNE3-202ENST00000553340 KIAA0586Q9BVV6 1533 aa23.74■■□□□ 1.39
SYNE3-202ENST00000553340 KIF14Q15058 1648 aa23.73■■□□□ 1.39
SYNE3-202ENST00000553340 CAMSAP2Q08AD1 1489 aa23.73■■□□□ 1.39
SYNE3-202ENST00000553340 ADGBQ8N7X0 1667 aa23.72■■□□□ 1.39
SYNE3-202ENST00000553340 CNGB1Q14028 1251 aaPredicted RBP23.72■■□□□ 1.39
SYNE3-202ENST00000553340 ZNF326Q5BKZ1 582 aaKnown RBP23.72■■□□□ 1.39
SYNE3-202ENST00000553340 CCDC136Q96JN2 1154 aa23.72■■□□□ 1.39
SYNE3-202ENST00000553340 NOP58Q9Y2X3 529 aaKnown RBP23.72■■□□□ 1.39
SYNE3-202ENST00000553340 CFDP1Q9UEE9 299 aaPredicted RBP23.71■■□□□ 1.39
SYNE3-202ENST00000553340 ROCK2O75116 1388 aaKnown RBP23.7■■□□□ 1.38
SYNE3-202ENST00000553340 KDM5CP41229 1560 aa23.69■■□□□ 1.38
SYNE3-202ENST00000553340 TROQ12816 1431 aaPredicted RBP23.69■■□□□ 1.38
SYNE3-202ENST00000553340 ITSN2Q9NZM3 1697 aa23.69■■□□□ 1.38
SYNE3-202ENST00000553340 DNAJC5BQ9UF47 199 aa23.68■■□□□ 1.38
SYNE3-202ENST00000553340 PKD2Q13563 968 aa23.68■■□□□ 1.38
SYNE3-202ENST00000553340 ADGRL2O95490 1459 aa23.68■■□□□ 1.38
SYNE3-202ENST00000553340 PNISRQ8TF01 805 aaKnown RBP23.67■■□□□ 1.38
SYNE3-202ENST00000553340 TMC1Q8TDI8 760 aa23.66■■□□□ 1.38
SYNE3-202ENST00000553340 PRG4Q92954 1404 aaPredicted RBP23.66■■□□□ 1.38
SYNE3-202ENST00000553340 MRC2Q9UBG0 1479 aa23.65■■□□□ 1.38
SYNE3-202ENST00000553340 ANKRD30AQ9BXX3 1397 aa23.64■■□□□ 1.38
SYNE3-202ENST00000553340 GPATCH8Q9UKJ3 1502 aaKnown RBP23.64■■□□□ 1.37
SYNE3-202ENST00000553340 UHRF1BP1Q6BDS2 1440 aa23.63■■□□□ 1.37
SYNE3-202ENST00000553340 CROCC2H7BZ55 1655 aa23.62■■□□□ 1.37
SYNE3-202ENST00000553340 RALGAPBQ86X10 1494 aa23.62■■□□□ 1.37
SYNE3-202ENST00000553340 ZNF777Q9ULD5 760 aaPredicted RBP23.62■■□□□ 1.37
SYNE3-202ENST00000553340 DEKP35659 375 aaKnown RBP23.61■■□□□ 1.37
SYNE3-202ENST00000553340 ANP32AP39687 249 aaKnown RBP23.61■■□□□ 1.37
SYNE3-202ENST00000553340 KIF15Q9NS87 1388 aa23.6■■□□□ 1.37
SYNE3-202ENST00000553340 ANKRD50Q9ULJ7 1429 aa23.59■■□□□ 1.37
SYNE3-202ENST00000553340 IFT140Q96RY7 1462 aa23.59■■□□□ 1.37
SYNE3-202ENST00000553340 CARD11Q9BXL7 1154 aa23.59■■□□□ 1.37
SYNE3-202ENST00000553340 ZNF608Q9ULD9 1512 aaPredicted RBP23.59■■□□□ 1.37
SYNE3-202ENST00000553340 PAK3O75914 559 aaPredicted RBP23.58■■□□□ 1.37
SYNE3-202ENST00000553340 ADCY10Q96PN6 1610 aa23.57■■□□□ 1.36
SYNE3-202ENST00000553340 KTN1Q86UP2 1357 aaKnown RBP23.56■■□□□ 1.36
SYNE3-202ENST00000553340 GRIN2AQ12879 1464 aa23.56■■□□□ 1.36
SYNE3-202ENST00000553340 IPO9Q96P70 1041 aaKnown RBP23.56■■□□□ 1.36
SYNE3-202ENST00000553340 ARHGEF12Q9NZN5 1544 aa23.56■■□□□ 1.36
SYNE3-202ENST00000553340 LRPPRCP42704 1394 aaKnown RBP23.56■■□□□ 1.36
SYNE3-202ENST00000553340 BRD4O60885 1362 aaPredicted RBP23.55■■□□□ 1.36
SYNE3-202ENST00000553340 SENP3-EIF4A1A0A087X0R7 540 aa23.54■■□□□ 1.36
SYNE3-202ENST00000553340 NUP155O75694 1391 aa23.53■■□□□ 1.36
SYNE3-202ENST00000553340 RALBP1Q15311 655 aa23.53■■□□□ 1.36
SYNE3-202ENST00000553340 MYBBP1AQ9BQG0 1328 aaKnown RBP23.53■■□□□ 1.36
SYNE3-202ENST00000553340 NBR1Q14596 966 aa23.53■■□□□ 1.36
SYNE3-202ENST00000553340 PLB1Q6P1J6 1458 aa23.52■■□□□ 1.36
SYNE3-202ENST00000553340 ST20-MTHFSA0A0A6YYL1 179 aa23.5■■□□□ 1.35
SYNE3-202ENST00000553340 ZBTB47Q9UFB7 747 aaPredicted RBP23.49■■□□□ 1.35
SYNE3-202ENST00000553340 SHANK2Q9UPX8 1470 aa23.47■■□□□ 1.35
SYNE3-202ENST00000553340 RRP1P56182 461 aaKnown RBP23.47■■□□□ 1.35
SYNE3-202ENST00000553340 KDM2AQ9Y2K7 1162 aa23.46■■□□□ 1.35
SYNE3-202ENST00000553340 C9orf84Q5VXU9 1444 aa23.46■■□□□ 1.35
SYNE3-202ENST00000553340 KDM5DQ9BY66 1539 aa23.46■■□□□ 1.35
SYNE3-202ENST00000553340 DCAF11Q8TEB1 546 aa23.44■■□□□ 1.34
SYNE3-202ENST00000553340 E9PCH4 1651 aa23.44■■□□□ 1.34
SYNE3-202ENST00000553340 CEP170Q5SW79 1584 aa23.43■■□□□ 1.34
SYNE3-202ENST00000553340 CDC42BPAQ5VT25 1732 aa23.42■■□□□ 1.34
SYNE3-202ENST00000553340 TSPY4P0CV99 314 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms