RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 PDS5BQ9NTI5 1447 aa14.73□□□□□ -0.05
SYNE2-208ENST00000553289 ANKRD30AQ9BXX3 1397 aa14.73□□□□□ -0.05
SYNE2-208ENST00000553289 IPO8O15397 1037 aaKnown RBP14.73□□□□□ -0.05
SYNE2-208ENST00000553289 SRPK2P78362 688 aaKnown RBP14.73□□□□□ -0.05
SYNE2-208ENST00000553289 CALD1Q05682 793 aaKnown RBP14.72□□□□□ -0.05
SYNE2-208ENST00000553289 L1TD1Q5T7N2 865 aaKnown RBP14.72□□□□□ -0.05
SYNE2-208ENST00000553289 FGD1P98174 961 aa14.72□□□□□ -0.05
SYNE2-208ENST00000553289 KCNJ4P48050 445 aa14.72□□□□□ -0.05
SYNE2-208ENST00000553289 KANK4Q5T7N3 995 aaPredicted RBP14.71□□□□□ -0.05
SYNE2-208ENST00000553289 ABCC8Q09428 1581 aa14.71□□□□□ -0.06
SYNE2-208ENST00000553289 HDGFL2Q7Z4V5 671 aaPredicted RBP14.71□□□□□ -0.06
SYNE2-208ENST00000553289 MPHOSPH9Q99550 1183 aa14.71□□□□□ -0.06
SYNE2-208ENST00000553289 EIF3AQ14152 1382 aaKnown RBP14.7□□□□□ -0.06
SYNE2-208ENST00000553289 LMOD2Q6P5Q4 547 aa14.7□□□□□ -0.06
SYNE2-208ENST00000553289 ROCK2O75116 1388 aaKnown RBP14.69□□□□□ -0.06
SYNE2-208ENST00000553289 PTMSP20962 102 aa14.69□□□□□ -0.06
SYNE2-208ENST00000553289 TOP2AP11388 1531 aaKnown RBP14.69□□□□□ -0.06
SYNE2-208ENST00000553289 NAP1L5Q96NT1 182 aaPredicted RBP14.67□□□□□ -0.06
SYNE2-208ENST00000553289 CHMP4AQ9BY43 222 aa14.67□□□□□ -0.06
SYNE2-208ENST00000553289 TCERG1O14776 1098 aaKnown RBP14.67□□□□□ -0.06
SYNE2-208ENST00000553289 NUP155O75694 1391 aa14.67□□□□□ -0.06
SYNE2-208ENST00000553289 RCAN3Q9UKA8 241 aa14.67□□□□□ -0.06
SYNE2-208ENST00000553289 GOLGA6L4A6NEF3 574 aa14.67□□□□□ -0.06
SYNE2-208ENST00000553289 EFCAB2Q5VUJ9 269 aa14.67□□□□□ -0.06
SYNE2-208ENST00000553289 RTF1Q92541 710 aaKnown RBP14.67□□□□□ -0.06
SYNE2-208ENST00000553289 RSPH4AQ5TD94 716 aa14.66□□□□□ -0.06
SYNE2-208ENST00000553289 RWDD1Q9H446 243 aaPredicted RBP14.65□□□□□ -0.06
SYNE2-208ENST00000553289 RBM19Q9Y4C8 960 aaKnown RBP14.65□□□□□ -0.06
SYNE2-208ENST00000553289 PLCB2Q00722 1185 aa14.64□□□□□ -0.07
SYNE2-208ENST00000553289 RAPGEF2Q9Y4G8 1499 aa14.64□□□□□ -0.07
SYNE2-208ENST00000553289 PDE3BQ13370 1112 aa14.63□□□□□ -0.07
SYNE2-208ENST00000553289 CHAF1AQ13111 956 aaPredicted RBP14.62□□□□□ -0.07
SYNE2-208ENST00000553289 TPRNQ4KMQ1 711 aa14.62□□□□□ -0.07
SYNE2-208ENST00000553289 CCDC18Q5T9S5 1454 aa14.62□□□□□ -0.07
SYNE2-208ENST00000553289 GOLGA2Q08379 1002 aa14.61□□□□□ -0.07
SYNE2-208ENST00000553289 PHLDB1Q86UU1 1377 aa14.61□□□□□ -0.07
SYNE2-208ENST00000553289 PMFBP1Q8TBY8 1022 aa14.61□□□□□ -0.07
SYNE2-208ENST00000553289 GGT6Q6P531 493 aa14.61□□□□□ -0.07
SYNE2-208ENST00000553289 GBP4Q96PP9 640 aa14.6□□□□□ -0.07
SYNE2-208ENST00000553289 NPHP1O15259 732 aa14.6□□□□□ -0.07
SYNE2-208ENST00000553289 U2AF1L5P0DN76 240 aaPredicted RBP14.59□□□□□ -0.07
SYNE2-208ENST00000553289 MSNP26038 577 aaKnown RBP14.59□□□□□ -0.07
SYNE2-208ENST00000553289 U2AF1Q01081 240 aaKnown RBP eCLIP14.59□□□□□ -0.07
SYNE2-208ENST00000553289 FOXD1Q16676 465 aa14.59□□□□□ -0.07
SYNE2-208ENST00000553289 NLRP13Q86W25 1043 aa14.58□□□□□ -0.07
SYNE2-208ENST00000553289 NAP1L2Q9ULW6 460 aaPredicted RBP14.58□□□□□ -0.07
SYNE2-208ENST00000553289 KIAA1211Q6ZU35 1233 aa14.58□□□□□ -0.08
SYNE2-208ENST00000553289 TDRD9Q8NDG6 1382 aaKnown RBP14.57□□□□□ -0.08
SYNE2-208ENST00000553289 SAFB2Q14151 953 aaKnown RBP eCLIP14.57□□□□□ -0.08
SYNE2-208ENST00000553289 HDAC5Q9UQL6 1122 aa14.57□□□□□ -0.08
SYNE2-208ENST00000553289 DEKP35659 375 aaKnown RBP14.56□□□□□ -0.08
SYNE2-208ENST00000553289 TERF2IPQ9NYB0 399 aa14.56□□□□□ -0.08
SYNE2-208ENST00000553289 L3MBTL2Q969R5 705 aa14.55□□□□□ -0.08
SYNE2-208ENST00000553289 STK26Q9P289 416 aa14.55□□□□□ -0.08
SYNE2-208ENST00000553289 ITPRIPQ8IWB1 547 aa14.55□□□□□ -0.08
SYNE2-208ENST00000553289 CADPSQ9ULU8 1353 aa14.55□□□□□ -0.08
SYNE2-208ENST00000553289 MLECQ14165 292 aa14.54□□□□□ -0.08
SYNE2-208ENST00000553289 HTATSF1O43719 755 aaKnown RBP14.54□□□□□ -0.08
SYNE2-208ENST00000553289 SPAG9O60271 1321 aaKnown RBP14.53□□□□□ -0.08
SYNE2-208ENST00000553289 KIF15Q9NS87 1388 aa14.53□□□□□ -0.08
SYNE2-208ENST00000553289 SOX12O15370 315 aa14.53□□□□□ -0.08
SYNE2-208ENST00000553289 FHOD3Q2V2M9 1422 aa14.52□□□□□ -0.08
SYNE2-208ENST00000553289 LMOD3Q0VAK6 560 aa14.52□□□□□ -0.08
SYNE2-208ENST00000553289 WIZO95785 1651 aa14.52□□□□□ -0.08
SYNE2-208ENST00000553289 HMMRO75330 724 aa14.52□□□□□ -0.09
SYNE2-208ENST00000553289 SYAP1Q96A49 352 aaPredicted RBP14.51□□□□□ -0.09
SYNE2-208ENST00000553289 STK31Q9BXU1 1019 aa14.51□□□□□ -0.09
SYNE2-208ENST00000553289 RTN4Q9NQC3 1192 aaKnown RBP14.51□□□□□ -0.09
SYNE2-208ENST00000553289 KIF3BO15066 747 aa14.49□□□□□ -0.09
SYNE2-208ENST00000553289 DRC7Q8IY82 874 aa14.49□□□□□ -0.09
SYNE2-208ENST00000553289 SMC4Q9NTJ3 1288 aa14.49□□□□□ -0.09
SYNE2-208ENST00000553289 CENPJQ9HC77 1338 aaPredicted RBP14.49□□□□□ -0.09
SYNE2-208ENST00000553289 MYBBP1AQ9BQG0 1328 aaKnown RBP14.49□□□□□ -0.09
SYNE2-208ENST00000553289 UACAQ9BZF9 1416 aa14.48□□□□□ -0.09
SYNE2-208ENST00000553289 SPRYD3Q8NCJ5 442 aa14.48□□□□□ -0.09
SYNE2-208ENST00000553289 GPATCH3Q96I76 525 aa14.48□□□□□ -0.09
SYNE2-208ENST00000553289 IPO9Q96P70 1041 aaKnown RBP14.48□□□□□ -0.09
SYNE2-208ENST00000553289 GNL2Q13823 731 aaKnown RBP14.47□□□□□ -0.09
SYNE2-208ENST00000553289 TAOK2Q9UL54 1235 aa14.47□□□□□ -0.09
SYNE2-208ENST00000553289 DHX57Q6P158 1386 aaKnown RBP14.47□□□□□ -0.09
SYNE2-208ENST00000553289 KIAA2012Q0VF49 1180 aa14.46□□□□□ -0.09
SYNE2-208ENST00000553289 HNRNPMP52272 730 aaKnown RBP eCLIP14.46□□□□□ -0.09
SYNE2-208ENST00000553289 APBB1O00213 710 aa14.45□□□□□ -0.1
SYNE2-208ENST00000553289 CCDC144AA2RUR9 1427 aa14.45□□□□□ -0.1
SYNE2-208ENST00000553289 CSPP1Q1MSJ5 1256 aa14.45□□□□□ -0.1
SYNE2-208ENST00000553289 TSHZ2Q9NRE2 1034 aa14.43□□□□□ -0.1
SYNE2-208ENST00000553289 PAK3O75914 559 aaPredicted RBP14.43□□□□□ -0.1
SYNE2-208ENST00000553289 ATAD2BQ9ULI0 1458 aa14.43□□□□□ -0.1
SYNE2-208ENST00000553289 TULP1O00294 542 aaPredicted RBP14.43□□□□□ -0.1
SYNE2-208ENST00000553289 SLKQ9H2G2 1235 aaPredicted RBP14.43□□□□□ -0.1
SYNE2-208ENST00000553289 CCDC34Q96HJ3 373 aa14.42□□□□□ -0.1
SYNE2-208ENST00000553289 WASHC2CQ9Y4E1 1318 aa14.42□□□□□ -0.1
SYNE2-208ENST00000553289 MFAP1P55081 439 aaKnown RBP14.42□□□□□ -0.1
SYNE2-208ENST00000553289 EID1Q9Y6B2 187 aa14.42□□□□□ -0.1
SYNE2-208ENST00000553289 CSB-PGBD3P0DP91 1061 aa14.41□□□□□ -0.1
SYNE2-208ENST00000553289 GOLGA6L3A6NEY3 463 aa14.41□□□□□ -0.1
SYNE2-208ENST00000553289 TRHP20396 242 aaPredicted RBP14.41□□□□□ -0.1
SYNE2-208ENST00000553289 NGEFQ8N5V2 710 aa14.41□□□□□ -0.1
SYNE2-208ENST00000553289 SMARCA4P51532 1647 aa14.41□□□□□ -0.1
SYNE2-208ENST00000553289 TPM4P67936 248 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms