RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 LRRC9Q6ZRR7 1453 aa22.25■■□□□ 1.15
PTCH1-226ENST00000553011 EFCAB2Q5VUJ9 269 aa22.24■■□□□ 1.15
PTCH1-226ENST00000553011 GPATCH8Q9UKJ3 1502 aaKnown RBP22.23■■□□□ 1.15
PTCH1-226ENST00000553011 KANK4Q5T7N3 995 aaPredicted RBP22.23■■□□□ 1.15
PTCH1-226ENST00000553011 FRMPD1Q5SYB0 1578 aa22.22■■□□□ 1.15
PTCH1-226ENST00000553011 ADGRL1O94910 1474 aa22.22■■□□□ 1.15
PTCH1-226ENST00000553011 RICTORQ6R327 1708 aa22.21■■□□□ 1.15
PTCH1-226ENST00000553011 RAPGEF3O95398 923 aa22.21■■□□□ 1.15
PTCH1-226ENST00000553011 CCNB3Q8WWL7 1395 aa22.21■■□□□ 1.15
PTCH1-226ENST00000553011 APLP2Q06481 763 aa22.2■■□□□ 1.14
PTCH1-226ENST00000553011 DENND4BO75064 1496 aaPredicted RBP22.2■■□□□ 1.14
PTCH1-226ENST00000553011 NCOA2Q15596 1464 aa22.2■■□□□ 1.14
PTCH1-226ENST00000553011 ITSN2Q9NZM3 1697 aa22.18■■□□□ 1.14
PTCH1-226ENST00000553011 SCAPERQ9BY12 1400 aa22.18■■□□□ 1.14
PTCH1-226ENST00000553011 SAMD9LQ8IVG5 1584 aa22.15■■□□□ 1.14
PTCH1-226ENST00000553011 ABCC1P33527 1531 aa22.14■■□□□ 1.13
PTCH1-226ENST00000553011 CFDP1Q9UEE9 299 aaPredicted RBP22.13■■□□□ 1.13
PTCH1-226ENST00000553011 ZNF777Q9ULD5 760 aaPredicted RBP22.13■■□□□ 1.13
PTCH1-226ENST00000553011 POGZQ7Z3K3 1410 aa22.13■■□□□ 1.13
PTCH1-226ENST00000553011 ARHGEF12Q9NZN5 1544 aa22.11■■□□□ 1.13
PTCH1-226ENST00000553011 ZMYM4Q5VZL5 1548 aa22.09■■□□□ 1.13
PTCH1-226ENST00000553011 SYCP2Q9BX26 1530 aa22.08■■□□□ 1.13
PTCH1-226ENST00000553011 ZNF518AQ6AHZ1 1483 aa22.06■■□□□ 1.12
PTCH1-226ENST00000553011 TRAPPC8Q9Y2L5 1435 aa22.06■■□□□ 1.12
PTCH1-226ENST00000553011 ZNF644Q9H582 1327 aaPredicted RBP22.06■■□□□ 1.12
PTCH1-226ENST00000553011 KDM5CP41229 1560 aa22.05■■□□□ 1.12
PTCH1-226ENST00000553011 AFAP1Q8N556 730 aa22.05■■□□□ 1.12
PTCH1-226ENST00000553011 ARHGEF40Q8TER5 1519 aa22.05■■□□□ 1.12
PTCH1-226ENST00000553011 PLEKHH2Q8IVE3 1493 aa22.03■■□□□ 1.12
PTCH1-226ENST00000553011 ZFYVE16Q7Z3T8 1539 aa22.02■■□□□ 1.12
PTCH1-226ENST00000553011 HNRNPMP52272 730 aaKnown RBP eCLIP22.02■■□□□ 1.12
PTCH1-226ENST00000553011 MYOM3Q5VTT5 1437 aa22.02■■□□□ 1.12
PTCH1-226ENST00000553011 KIAA1107Q9UPP5 1409 aa22.02■■□□□ 1.12
PTCH1-226ENST00000553011 YEATS2Q9ULM3 1422 aa22.01■■□□□ 1.11
PTCH1-226ENST00000553011 CAMSAP2Q08AD1 1489 aa22.01■■□□□ 1.11
PTCH1-226ENST00000553011 HECW2Q9P2P5 1572 aa22■■□□□ 1.11
PTCH1-226ENST00000553011 MAGI2Q86UL8 1455 aa22■■□□□ 1.11
PTCH1-226ENST00000553011 KIDINS220Q9ULH0 1771 aa21.97■■□□□ 1.11
PTCH1-226ENST00000553011 MBD5Q9P267 1494 aa21.96■■□□□ 1.11
PTCH1-226ENST00000553011 MIA2Q96PC5 1412 aa21.96■■□□□ 1.11
PTCH1-226ENST00000553011 MLH3Q9UHC1 1453 aa21.96■■□□□ 1.11
PTCH1-226ENST00000553011 PPARGC1BQ86YN6 1023 aaKnown RBP21.95■■□□□ 1.1
PTCH1-226ENST00000553011 SIGLEC1Q9BZZ2 1709 aa21.94■■□□□ 1.1
PTCH1-226ENST00000553011 MYT1LQ9UL68 1186 aa21.94■■□□□ 1.1
PTCH1-226ENST00000553011 ABCA6Q8N139 1617 aa21.94■■□□□ 1.1
PTCH1-226ENST00000553011 DIP2CQ9Y2E4 1556 aa21.93■■□□□ 1.1
PTCH1-226ENST00000553011 PTPN23Q9H3S7 1636 aa21.92■■□□□ 1.1
PTCH1-226ENST00000553011 INO80Q9ULG1 1556 aaPredicted RBP21.91■■□□□ 1.1
PTCH1-226ENST00000553011 FGD6Q6ZV73 1430 aa21.91■■□□□ 1.1
PTCH1-226ENST00000553011 ARHGEF5Q12774 1597 aa21.91■■□□□ 1.1
PTCH1-226ENST00000553011 ATP10AO60312 1499 aa21.9■■□□□ 1.1
PTCH1-226ENST00000553011 SPAG9O60271 1321 aaKnown RBP21.9■■□□□ 1.1
PTCH1-226ENST00000553011 ATP7AQ04656 1500 aa21.9■■□□□ 1.1
PTCH1-226ENST00000553011 CCDC141Q6ZP82 1450 aa21.9■■□□□ 1.1
PTCH1-226ENST00000553011 KDM4FA0A1W2PPD8 638 aa21.89■■□□□ 1.09
PTCH1-226ENST00000553011 C9orf84Q5VXU9 1444 aa21.88■■□□□ 1.09
PTCH1-226ENST00000553011 ARID4BQ4LE39 1312 aaPredicted RBP21.86■■□□□ 1.09
PTCH1-226ENST00000553011 BCORL1Q5H9F3 1711 aa21.86■■□□□ 1.09
PTCH1-226ENST00000553011 TCOF1Q13428 1488 aaKnown RBP21.85■■□□□ 1.09
PTCH1-226ENST00000553011 RSPH4AQ5TD94 716 aa21.83■■□□□ 1.09
PTCH1-226ENST00000553011 REREQ9P2R6 1566 aa21.82■■□□□ 1.08
PTCH1-226ENST00000553011 ADAMTSL3P82987 1691 aa21.82■■□□□ 1.08
PTCH1-226ENST00000553011 CROCC2H7BZ55 1655 aa21.81■■□□□ 1.08
PTCH1-226ENST00000553011 ADGBQ8N7X0 1667 aa21.81■■□□□ 1.08
PTCH1-226ENST00000553011 RTEL1-TNFRSF6BF6WH68 1400 aa21.8■■□□□ 1.08
PTCH1-226ENST00000553011 DNMT1P26358 1616 aaKnown RBP21.79■■□□□ 1.08
PTCH1-226ENST00000553011 MAST1Q9Y2H9 1570 aa21.78■■□□□ 1.08
PTCH1-226ENST00000553011 TSPY4P0CV99 314 aa21.78■■□□□ 1.08
PTCH1-226ENST00000553011 TSPY10P0CW01 314 aa21.78■■□□□ 1.08
PTCH1-226ENST00000553011 MLECQ14165 292 aa21.77■■□□□ 1.08
PTCH1-226ENST00000553011 ABCC5O15440 1437 aa21.77■■□□□ 1.08
PTCH1-226ENST00000553011 MADDQ8WXG6 1647 aa21.77■■□□□ 1.07
PTCH1-226ENST00000553011 FAM50AQ14320 339 aaKnown RBP21.76■■□□□ 1.07
PTCH1-226ENST00000553011 A2MP01023 1474 aa21.76■■□□□ 1.07
PTCH1-226ENST00000553011 AGLP35573 1532 aa21.75■■□□□ 1.07
PTCH1-226ENST00000553011 PLXNC1O60486 1568 aa21.75■■□□□ 1.07
PTCH1-226ENST00000553011 DAPK1P53355 1430 aa21.75■■□□□ 1.07
PTCH1-226ENST00000553011 AEBP2Q6ZN18 517 aaPredicted RBP21.74■■□□□ 1.07
PTCH1-226ENST00000553011 FER1L4A9Z1Z3 1794 aa21.74■■□□□ 1.07
PTCH1-226ENST00000553011 RIMS1Q86UR5 1692 aaKnown RBP21.72■■□□□ 1.07
PTCH1-226ENST00000553011 SHANK2Q9UPX8 1470 aa21.72■■□□□ 1.07
PTCH1-226ENST00000553011 DHX29Q7Z478 1369 aaKnown RBP21.68■■□□□ 1.06
PTCH1-226ENST00000553011 CHIC2Q9UKJ5 165 aa21.66■■□□□ 1.06
PTCH1-226ENST00000553011 PTPRMP28827 1452 aa21.65■■□□□ 1.06
PTCH1-226ENST00000553011 RRBP1Q9P2E9 1410 aaKnown RBP21.64■■□□□ 1.06
PTCH1-226ENST00000553011 PTPRKQ15262 1439 aa21.63■■□□□ 1.05
PTCH1-226ENST00000553011 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.61■■□□□ 1.05
PTCH1-226ENST00000553011 KIF15Q9NS87 1388 aa21.61■■□□□ 1.05
PTCH1-226ENST00000553011 DUOX2Q9NRD8 1548 aa21.61■■□□□ 1.05
PTCH1-226ENST00000553011 RRP7BPQ9NSQ0 103 aa21.61■■□□□ 1.05
PTCH1-226ENST00000553011 ADGRL2O95490 1459 aa21.6■■□□□ 1.05
PTCH1-226ENST00000553011 KIF3BO15066 747 aa21.6■■□□□ 1.05
PTCH1-226ENST00000553011 ANKRD30AQ9BXX3 1397 aa21.6■■□□□ 1.05
PTCH1-226ENST00000553011 NCOA1Q15788 1441 aa21.59■■□□□ 1.05
PTCH1-226ENST00000553011 GGT6Q6P531 493 aa21.59■■□□□ 1.05
PTCH1-226ENST00000553011 EIF2AK4Q9P2K8 1649 aaKnown RBP21.58■■□□□ 1.05
PTCH1-226ENST00000553011 ITGAEP38570 1179 aa21.58■■□□□ 1.05
PTCH1-226ENST00000553011 CLTCQ00610 1675 aaKnown RBP21.57■■□□□ 1.04
PTCH1-226ENST00000553011 PLPPR3Q6T4P5 718 aa21.57■■□□□ 1.04
PTCH1-226ENST00000553011 RNF17Q9BXT8 1623 aaKnown RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms