RNA–Protein interactions for RNA: ENST00000552301.1

PRPF40B-216, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 912 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-216ENST00000552301 RAPGEF3O95398 923 aa29.14■■■□□ 2.26
PRPF40B-216ENST00000552301 APLP2Q06481 763 aa29.11■■■□□ 2.25
PRPF40B-216ENST00000552301 CDC42BPAQ5VT25 1732 aa29.11■■■□□ 2.25
PRPF40B-216ENST00000552301 CDC42BPBQ9Y5S2 1711 aa29.11■■■□□ 2.25
PRPF40B-216ENST00000552301 CCNB3Q8WWL7 1395 aa29.1■■■□□ 2.25
PRPF40B-216ENST00000552301 SCAPERQ9BY12 1400 aa29.09■■■□□ 2.25
PRPF40B-216ENST00000552301 FRMPD1Q5SYB0 1578 aa29.09■■■□□ 2.25
PRPF40B-216ENST00000552301 MAP3K1Q13233 1512 aa29.08■■■□□ 2.25
PRPF40B-216ENST00000552301 RICTORQ6R327 1708 aa29.06■■■□□ 2.24
PRPF40B-216ENST00000552301 SUPT6HQ7KZ85 1726 aaKnown RBP29.06■■■□□ 2.24
PRPF40B-216ENST00000552301 GPATCH8Q9UKJ3 1502 aaKnown RBP29.05■■■□□ 2.24
PRPF40B-216ENST00000552301 LRRC9Q6ZRR7 1453 aa29.04■■■□□ 2.24
PRPF40B-216ENST00000552301 POGZQ7Z3K3 1410 aa29.03■■■□□ 2.24
PRPF40B-216ENST00000552301 CFDP1Q9UEE9 299 aaPredicted RBP29.01■■■□□ 2.23
PRPF40B-216ENST00000552301 ZNF777Q9ULD5 760 aaPredicted RBP29.01■■■□□ 2.23
PRPF40B-216ENST00000552301 ITSN2Q9NZM3 1697 aa29.01■■■□□ 2.23
PRPF40B-216ENST00000552301 NCOA2Q15596 1464 aa29■■■□□ 2.23
PRPF40B-216ENST00000552301 ABCC1P33527 1531 aa28.99■■■□□ 2.23
PRPF40B-216ENST00000552301 ZMYM4Q5VZL5 1548 aa28.99■■■□□ 2.23
PRPF40B-216ENST00000552301 ZNF518AQ6AHZ1 1483 aa28.97■■■□□ 2.23
PRPF40B-216ENST00000552301 ARHGEF40Q8TER5 1519 aa28.94■■■□□ 2.22
PRPF40B-216ENST00000552301 KANK4Q5T7N3 995 aaPredicted RBP28.94■■■□□ 2.22
PRPF40B-216ENST00000552301 SAMD9LQ8IVG5 1584 aa28.93■■■□□ 2.22
PRPF40B-216ENST00000552301 MAGI2Q86UL8 1455 aa28.93■■■□□ 2.22
PRPF40B-216ENST00000552301 ZFYVE16Q7Z3T8 1539 aa28.93■■■□□ 2.22
PRPF40B-216ENST00000552301 PLEKHH2Q8IVE3 1493 aa28.92■■■□□ 2.22
PRPF40B-216ENST00000552301 KDM4FA0A1W2PPD8 638 aa28.92■■■□□ 2.22
PRPF40B-216ENST00000552301 SYCP2Q9BX26 1530 aa28.89■■■□□ 2.22
PRPF40B-216ENST00000552301 MYT1LQ9UL68 1186 aa28.89■■■□□ 2.22
PRPF40B-216ENST00000552301 AFAP1Q8N556 730 aa28.88■■■□□ 2.21
PRPF40B-216ENST00000552301 ARHGEF12Q9NZN5 1544 aa28.88■■■□□ 2.21
PRPF40B-216ENST00000552301 KDM5CP41229 1560 aa28.88■■■□□ 2.21
PRPF40B-216ENST00000552301 TRAPPC8Q9Y2L5 1435 aa28.86■■■□□ 2.21
PRPF40B-216ENST00000552301 YEATS2Q9ULM3 1422 aa28.86■■■□□ 2.21
PRPF40B-216ENST00000552301 KIAA1107Q9UPP5 1409 aa28.86■■■□□ 2.21
PRPF40B-216ENST00000552301 HECW2Q9P2P5 1572 aa28.85■■■□□ 2.21
PRPF40B-216ENST00000552301 ARID4BQ4LE39 1312 aaPredicted RBP28.82■■■□□ 2.2
PRPF40B-216ENST00000552301 HNRNPMP52272 730 aaKnown RBP eCLIP28.81■■■□□ 2.2
PRPF40B-216ENST00000552301 ZNF644Q9H582 1327 aaPredicted RBP28.79■■■□□ 2.2
PRPF40B-216ENST00000552301 MLH3Q9UHC1 1453 aa28.78■■■□□ 2.2
PRPF40B-216ENST00000552301 CAMSAP2Q08AD1 1489 aa28.78■■■□□ 2.2
PRPF40B-216ENST00000552301 MYOM3Q5VTT5 1437 aa28.77■■■□□ 2.2
PRPF40B-216ENST00000552301 ATP10AO60312 1499 aa28.76■■■□□ 2.19
PRPF40B-216ENST00000552301 C9orf84Q5VXU9 1444 aa28.76■■■□□ 2.19
PRPF40B-216ENST00000552301 SPAG9O60271 1321 aaKnown RBP28.74■■■□□ 2.19
PRPF40B-216ENST00000552301 DIP2CQ9Y2E4 1556 aa28.72■■■□□ 2.19
PRPF40B-216ENST00000552301 MIA2Q96PC5 1412 aa28.72■■■□□ 2.19
PRPF40B-216ENST00000552301 ABCA6Q8N139 1617 aa28.7■■■□□ 2.19
PRPF40B-216ENST00000552301 MBD5Q9P267 1494 aa28.7■■■□□ 2.18
PRPF40B-216ENST00000552301 KIDINS220Q9ULH0 1771 aa28.7■■■□□ 2.18
PRPF40B-216ENST00000552301 ATP7AQ04656 1500 aa28.69■■■□□ 2.18
PRPF40B-216ENST00000552301 CCDC141Q6ZP82 1450 aa28.68■■■□□ 2.18
PRPF40B-216ENST00000552301 BCORL1Q5H9F3 1711 aa28.68■■■□□ 2.18
PRPF40B-216ENST00000552301 RSPH4AQ5TD94 716 aa28.66■■■□□ 2.18
PRPF40B-216ENST00000552301 INO80Q9ULG1 1556 aaPredicted RBP28.66■■■□□ 2.18
PRPF40B-216ENST00000552301 ARHGEF5Q12774 1597 aa28.63■■■□□ 2.17
PRPF40B-216ENST00000552301 REREQ9P2R6 1566 aa28.63■■■□□ 2.17
PRPF40B-216ENST00000552301 SIGLEC1Q9BZZ2 1709 aa28.63■■■□□ 2.17
PRPF40B-216ENST00000552301 ADAMTSL3P82987 1691 aa28.62■■■□□ 2.17
PRPF40B-216ENST00000552301 FGD6Q6ZV73 1430 aa28.6■■■□□ 2.17
PRPF40B-216ENST00000552301 MLECQ14165 292 aa28.6■■■□□ 2.17
PRPF40B-216ENST00000552301 PTPN23Q9H3S7 1636 aa28.6■■■□□ 2.17
PRPF40B-216ENST00000552301 TSPY4P0CV99 314 aa28.58■■■□□ 2.17
PRPF40B-216ENST00000552301 TSPY10P0CW01 314 aa28.58■■■□□ 2.17
PRPF40B-216ENST00000552301 RTEL1-TNFRSF6BF6WH68 1400 aa28.58■■■□□ 2.17
PRPF40B-216ENST00000552301 MADDQ8WXG6 1647 aa28.58■■■□□ 2.17
PRPF40B-216ENST00000552301 AGLP35573 1532 aa28.54■■■□□ 2.16
PRPF40B-216ENST00000552301 ADGBQ8N7X0 1667 aa28.53■■■□□ 2.16
PRPF40B-216ENST00000552301 A2MP01023 1474 aa28.53■■■□□ 2.16
PRPF40B-216ENST00000552301 TCOF1Q13428 1488 aaKnown RBP28.52■■■□□ 2.16
PRPF40B-216ENST00000552301 RIMS1Q86UR5 1692 aaKnown RBP28.51■■■□□ 2.15
PRPF40B-216ENST00000552301 PPARGC1BQ86YN6 1023 aaKnown RBP28.5■■■□□ 2.15
PRPF40B-216ENST00000552301 FER1L4A9Z1Z3 1794 aa28.5■■■□□ 2.15
PRPF40B-216ENST00000552301 PTPRMP28827 1452 aa28.49■■■□□ 2.15
PRPF40B-216ENST00000552301 PLXNC1O60486 1568 aa28.47■■■□□ 2.15
PRPF40B-216ENST00000552301 MAST1Q9Y2H9 1570 aa28.47■■■□□ 2.15
PRPF40B-216ENST00000552301 FAM50AQ14320 339 aaKnown RBP28.46■■■□□ 2.15
PRPF40B-216ENST00000552301 ESF1Q9H501 851 aaKnown RBP28.44■■■□□ 2.14
PRPF40B-216ENST00000552301 DNMT1P26358 1616 aaKnown RBP28.43■■■□□ 2.14
PRPF40B-216ENST00000552301 CROCC2H7BZ55 1655 aa28.43■■■□□ 2.14
PRPF40B-216ENST00000552301 SHANK2Q9UPX8 1470 aa28.43■■■□□ 2.14
PRPF40B-216ENST00000552301 DAPK1P53355 1430 aa28.43■■■□□ 2.14
PRPF40B-216ENST00000552301 ABCC5O15440 1437 aa28.42■■■□□ 2.14
PRPF40B-216ENST00000552301 DHX29Q7Z478 1369 aaKnown RBP28.41■■■□□ 2.14
PRPF40B-216ENST00000552301 PLPPR3Q6T4P5 718 aa28.38■■■□□ 2.13
PRPF40B-216ENST00000552301 GGT6Q6P531 493 aa28.34■■■□□ 2.13
PRPF40B-216ENST00000552301 CNTLNQ9NXG0 1405 aa28.33■■■□□ 2.13
PRPF40B-216ENST00000552301 KIF3BO15066 747 aa28.32■■■□□ 2.12
PRPF40B-216ENST00000552301 KIF15Q9NS87 1388 aa28.31■■■□□ 2.12
PRPF40B-216ENST00000552301 DUOX2Q9NRD8 1548 aa28.3■■■□□ 2.12
PRPF40B-216ENST00000552301 ANKRD30AQ9BXX3 1397 aa28.3■■■□□ 2.12
PRPF40B-216ENST00000552301 CHIC2Q9UKJ5 165 aa28.29■■■□□ 2.12
PRPF40B-216ENST00000552301 RRP7BPQ9NSQ0 103 aa28.27■■■□□ 2.12
PRPF40B-216ENST00000552301 PPP6R1Q9UPN7 881 aa28.26■■■□□ 2.11
PRPF40B-216ENST00000552301 EIF2AK4Q9P2K8 1649 aaKnown RBP28.25■■■□□ 2.11
PRPF40B-216ENST00000552301 CEBPAP49715 358 aaPredicted RBP28.23■■■□□ 2.11
PRPF40B-216ENST00000552301 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.23■■■□□ 2.11
PRPF40B-216ENST00000552301 MROH2AA6NES4 1674 aa28.23■■■□□ 2.11
PRPF40B-216ENST00000552301 CLTCQ00610 1675 aaKnown RBP28.23■■■□□ 2.11
PRPF40B-216ENST00000552301 ERBINQ96RT1 1412 aa28.22■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms