RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 ERBB3P21860 1342 aa13.07□□□□□ -0.32
VPS29-210ENST00000552130 GPR153Q6NV75 609 aa13.06□□□□□ -0.32
VPS29-210ENST00000552130 RTN4Q9NQC3 1192 aaKnown RBP13.06□□□□□ -0.32
VPS29-210ENST00000552130 FBXO22Q8NEZ5 403 aa13.04□□□□□ -0.32
VPS29-210ENST00000552130 VARS2Q5ST30 1063 aaKnown RBP13.01□□□□□ -0.33
VPS29-210ENST00000552130 NLRP6P59044 892 aa13□□□□□ -0.33
VPS29-210ENST00000552130 AMER1Q5JTC6 1135 aaPredicted RBP13□□□□□ -0.33
VPS29-210ENST00000552130 ZNF687Q8N1G0 1237 aa12.98□□□□□ -0.33
VPS29-210ENST00000552130 BCL11BQ9C0K0 894 aaPredicted RBP12.98□□□□□ -0.33
VPS29-210ENST00000552130 MFRPQ9BY79 579 aa12.96□□□□□ -0.33
VPS29-210ENST00000552130 TAOK2Q9UL54 1235 aa12.96□□□□□ -0.33
VPS29-210ENST00000552130 KIF3CO14782 793 aa12.93□□□□□ -0.34
VPS29-210ENST00000552130 ARSIQ5FYB1 569 aa12.91□□□□□ -0.34
VPS29-210ENST00000552130 STK24Q9Y6E0 443 aa12.91□□□□□ -0.34
VPS29-210ENST00000552130 RNF166Q96A37 237 aaPredicted RBP12.86□□□□□ -0.35
VPS29-210ENST00000552130 STK25O00506 426 aa12.85□□□□□ -0.35
VPS29-210ENST00000552130 KHSRPQ92945 711 aaKnown RBP eCLIP12.85□□□□□ -0.356e-11■□□□□ 11.2
VPS29-210ENST00000552130 ZNF316A6NFI3 1004 aaPredicted RBP12.84□□□□□ -0.35
VPS29-210ENST00000552130 PKD2Q13563 968 aa12.84□□□□□ -0.35
VPS29-210ENST00000552130 C2orf72A6NCS6 295 aa12.83□□□□□ -0.36
VPS29-210ENST00000552130 ECM2O94769 699 aaPredicted RBP12.83□□□□□ -0.36
VPS29-210ENST00000552130 MYT1LQ9UL68 1186 aa12.83□□□□□ -0.36
VPS29-210ENST00000552130 RGL2O15211 777 aa12.8□□□□□ -0.36
VPS29-210ENST00000552130 SLC34A2O95436 690 aa12.79□□□□□ -0.36
VPS29-210ENST00000552130 PTGER2P43116 358 aa12.79□□□□□ -0.36
VPS29-210ENST00000552130 NUDT7P0C024 238 aa12.72□□□□□ -0.37
VPS29-210ENST00000552130 LSM11P83369 360 aaKnown RBP eCLIP12.72□□□□□ -0.37
VPS29-210ENST00000552130 POTEEQ6S8J3 1075 aa12.72□□□□□ -0.37
VPS29-210ENST00000552130 PCDHGA4Q9Y5G9 962 aa12.72□□□□□ -0.37
VPS29-210ENST00000552130 PPP1R37O75864 691 aa12.7□□□□□ -0.38
VPS29-210ENST00000552130 ANKRD13DQ6ZTN6 518 aa12.7□□□□□ -0.38
VPS29-210ENST00000552130 PBX2P40425 430 aa12.69□□□□□ -0.38
VPS29-210ENST00000552130 LHX6Q9UPM6 363 aa12.69□□□□□ -0.38
VPS29-210ENST00000552130 KDM4FA0A1W2PPD8 638 aa12.67□□□□□ -0.38
VPS29-210ENST00000552130 TMC2Q8TDI7 906 aa12.67□□□□□ -0.38
VPS29-210ENST00000552130 PTCD2Q8WV60 388 aaKnown RBP12.6□□□□□ -0.39
VPS29-210ENST00000552130 AXIN2Q9Y2T1 843 aa12.6□□□□□ -0.39
VPS29-210ENST00000552130 FOXK1P85037 733 aa12.57□□□□□ -0.4
VPS29-210ENST00000552130 HS6ST3Q8IZP7 471 aa12.56□□□□□ -0.4
VPS29-210ENST00000552130 PSDA5PKW4 1024 aaPredicted RBP12.55□□□□□ -0.4
VPS29-210ENST00000552130 GPHNQ9NQX3 736 aaPredicted RBP12.54□□□□□ -0.4
VPS29-210ENST00000552130 ARHGAP33O14559 1287 aa12.53□□□□□ -0.4
VPS29-210ENST00000552130 ADGRD1Q6QNK2 874 aa12.51□□□□□ -0.41
VPS29-210ENST00000552130 PLPP6Q8IY26 295 aa12.51□□□□□ -0.41
VPS29-210ENST00000552130 DSG2Q14126 1118 aa12.48□□□□□ -0.41
VPS29-210ENST00000552130 DNAJC5Q9H3Z4 198 aa12.48□□□□□ -0.41
VPS29-210ENST00000552130 TK2O00142 265 aa12.47□□□□□ -0.41
VPS29-210ENST00000552130 HRO43593 1189 aa12.47□□□□□ -0.41
VPS29-210ENST00000552130 DMRTA1Q5VZB9 504 aa12.45□□□□□ -0.42
VPS29-210ENST00000552130 PSEN2P49810 448 aa12.43□□□□□ -0.42
VPS29-210ENST00000552130 HCSTQ9UBK5 93 aa12.43□□□□□ -0.42
VPS29-210ENST00000552130 NKX1-1Q15270 411 aaPredicted RBP12.41□□□□□ -0.42
VPS29-210ENST00000552130 PPP4R3BQ5MIZ7 849 aa12.4□□□□□ -0.42
VPS29-210ENST00000552130 TBC1D12O60347 775 aa12.39□□□□□ -0.43
VPS29-210ENST00000552130 OXER1Q8TDS5 423 aa12.39□□□□□ -0.43
VPS29-210ENST00000552130 PLA2G2EQ9NZK7 142 aa12.38□□□□□ -0.43
VPS29-210ENST00000552130 CHGAP10645 457 aaKnown RBP12.37□□□□□ -0.43
VPS29-210ENST00000552130 CRISPLD2Q9H0B8 497 aa12.37□□□□□ -0.43
VPS29-210ENST00000552130 RYDENQ9NUL5 291 aaKnown RBP12.3□□□□□ -0.44
VPS29-210ENST00000552130 KCNK17Q96T54 332 aa12.29□□□□□ -0.44
VPS29-210ENST00000552130 DAXXQ9UER7 740 aaPredicted RBP12.29□□□□□ -0.44
VPS29-210ENST00000552130 VPS9D1Q9Y2B5 631 aa12.29□□□□□ -0.44
VPS29-210ENST00000552130 SLC4A5Q9BY07 1137 aa12.28□□□□□ -0.44
VPS29-210ENST00000552130 NCKAP5LQ9HCH0 1330 aa12.28□□□□□ -0.44
VPS29-210ENST00000552130 PPP1R15BQ5SWA1 713 aa12.27□□□□□ -0.45
VPS29-210ENST00000552130 BCL2L12Q9HB09 334 aa12.27□□□□□ -0.45
VPS29-210ENST00000552130 UPF1Q92900 1129 aaKnown RBP eCLIP12.26□□□□□ -0.45
VPS29-210ENST00000552130 ANO8Q9HCE9 1232 aaPredicted RBP12.26□□□□□ -0.45
VPS29-210ENST00000552130 FOSBP53539 338 aa12.25□□□□□ -0.45
VPS29-210ENST00000552130 KCTD12Q96CX2 325 aaKnown RBP12.25□□□□□ -0.45
VPS29-210ENST00000552130 ZNF454Q8N9F8 522 aa12.24□□□□□ -0.45
VPS29-210ENST00000552130 BHMG1C9JSJ3 638 aaPredicted RBP12.23□□□□□ -0.45
VPS29-210ENST00000552130 KCNH8Q96L42 1107 aa12.22□□□□□ -0.45
VPS29-210ENST00000552130 PDE4AP27815 886 aa12.21□□□□□ -0.45
VPS29-210ENST00000552130 GTPBP6O43824 516 aaPredicted RBP12.2□□□□□ -0.46
VPS29-210ENST00000552130 JPH4Q96JJ6 628 aa12.18□□□□□ -0.46
VPS29-210ENST00000552130 STAC3Q96MF2 364 aa12.18□□□□□ -0.46
VPS29-210ENST00000552130 ZBED2Q9BTP6 218 aa12.18□□□□□ -0.46
VPS29-210ENST00000552130 PTPREP23469 700 aa12.16□□□□□ -0.46
VPS29-210ENST00000552130 MFSD10Q14728 455 aa12.16□□□□□ -0.46
VPS29-210ENST00000552130 EVI5O60447 810 aa12.15□□□□□ -0.46
VPS29-210ENST00000552130 PRKCSHP14314 528 aaPredicted RBP12.15□□□□□ -0.46
VPS29-210ENST00000552130 IFFO2Q5TF58 517 aa12.15□□□□□ -0.46
VPS29-210ENST00000552130 ADAM33Q9BZ11 813 aa12.13□□□□□ -0.47
VPS29-210ENST00000552130 THSD4Q6ZMP0 1018 aa12.12□□□□□ -0.47
VPS29-210ENST00000552130 ZDHHC16Q969W1 377 aa12.12□□□□□ -0.47
VPS29-210ENST00000552130 DDX27Q96GQ7 796 aaKnown RBP12.11□□□□□ -0.47
VPS29-210ENST00000552130 PTPN5P54829 565 aa12.1□□□□□ -0.47
VPS29-210ENST00000552130 LARP6Q9BRS8 491 aaKnown RBP12.1□□□□□ -0.47
VPS29-210ENST00000552130 EMILIN3Q9NT22 766 aa12.09□□□□□ -0.47
VPS29-210ENST00000552130 MRPL50Q8N5N7 158 aaKnown RBP12.05□□□□□ -0.48
VPS29-210ENST00000552130 PCDHGA10Q9Y5H3 936 aa12.05□□□□□ -0.48
VPS29-210ENST00000552130 RGS20O76081 388 aa12.04□□□□□ -0.48
VPS29-210ENST00000552130 MAP3K9P80192 1104 aa12.04□□□□□ -0.48
VPS29-210ENST00000552130 WNT2BQ93097 391 aa12.04□□□□□ -0.48
VPS29-210ENST00000552130 PPP1R3GB7ZBB8 358 aa12.02□□□□□ -0.49
VPS29-210ENST00000552130 NBPF3Q9H094 633 aa12.02□□□□□ -0.49
VPS29-210ENST00000552130 CADPS2Q86UW7 1296 aa12□□□□□ -0.49
VPS29-210ENST00000552130 BCANQ96GW7 911 aa12□□□□□ -0.49
VPS29-210ENST00000552130 RABGEF1Q9UJ41 708 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms