RNA–Protein interactions for RNA: ENST00000551269.1

PRPF40B-213, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 923 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-213ENST00000551269 GPATCH8Q9UKJ3 1502 aaKnown RBP18.13■□□□□ 0.49
PRPF40B-213ENST00000551269 PLCH2O75038 1416 aa18.13■□□□□ 0.49
PRPF40B-213ENST00000551269 MYOM3Q5VTT5 1437 aa18.13■□□□□ 0.49
PRPF40B-213ENST00000551269 SAMD9LQ8IVG5 1584 aa18.13■□□□□ 0.49
PRPF40B-213ENST00000551269 PTPN23Q9H3S7 1636 aa18.12■□□□□ 0.49
PRPF40B-213ENST00000551269 PPARGC1BQ86YN6 1023 aaKnown RBP18.12■□□□□ 0.49
PRPF40B-213ENST00000551269 ABCC1P33527 1531 aa18.1■□□□□ 0.49
PRPF40B-213ENST00000551269 NEO1Q92859 1461 aa18.1■□□□□ 0.49
PRPF40B-213ENST00000551269 PHLDB1Q86UU1 1377 aa18.09■□□□□ 0.49
PRPF40B-213ENST00000551269 KDM6BO15054 1643 aa18.08■□□□□ 0.48
PRPF40B-213ENST00000551269 CAMSAP2Q08AD1 1489 aa18.07■□□□□ 0.48
PRPF40B-213ENST00000551269 FGD6Q6ZV73 1430 aa18.06■□□□□ 0.48
PRPF40B-213ENST00000551269 MIA2Q96PC5 1412 aa18.06■□□□□ 0.48
PRPF40B-213ENST00000551269 RICTORQ6R327 1708 aa18.06■□□□□ 0.48
PRPF40B-213ENST00000551269 CROCC2H7BZ55 1655 aa18.06■□□□□ 0.48
PRPF40B-213ENST00000551269 SYCP2Q9BX26 1530 aa18.06■□□□□ 0.48
PRPF40B-213ENST00000551269 ADGRL1O94910 1474 aa18.06■□□□□ 0.48
PRPF40B-213ENST00000551269 PLEKHH2Q8IVE3 1493 aa18.06■□□□□ 0.48
PRPF40B-213ENST00000551269 CFDP1Q9UEE9 299 aaPredicted RBP18.04■□□□□ 0.48
PRPF40B-213ENST00000551269 EFCAB2Q5VUJ9 269 aa18.03■□□□□ 0.48
PRPF40B-213ENST00000551269 AKNAQ7Z591 1439 aa18.03■□□□□ 0.48
PRPF40B-213ENST00000551269 ZNF777Q9ULD5 760 aaPredicted RBP18.01■□□□□ 0.47
PRPF40B-213ENST00000551269 DNMT1P26358 1616 aaKnown RBP18.01■□□□□ 0.47
PRPF40B-213ENST00000551269 TCOF1Q13428 1488 aaKnown RBP18.01■□□□□ 0.47
PRPF40B-213ENST00000551269 ARHGEF5Q12774 1597 aa18■□□□□ 0.47
PRPF40B-213ENST00000551269 ADGBQ8N7X0 1667 aa17.99■□□□□ 0.47
PRPF40B-213ENST00000551269 FRMPD1Q5SYB0 1578 aa17.99■□□□□ 0.47
PRPF40B-213ENST00000551269 HECW2Q9P2P5 1572 aa17.97■□□□□ 0.47
PRPF40B-213ENST00000551269 DENND4BO75064 1496 aaPredicted RBP17.97■□□□□ 0.47
PRPF40B-213ENST00000551269 ZNF518AQ6AHZ1 1483 aa17.96■□□□□ 0.47
PRPF40B-213ENST00000551269 POGZQ7Z3K3 1410 aa17.96■□□□□ 0.47
PRPF40B-213ENST00000551269 SCAPERQ9BY12 1400 aa17.96■□□□□ 0.47
PRPF40B-213ENST00000551269 RRBP1Q9P2E9 1410 aaKnown RBP17.96■□□□□ 0.47
PRPF40B-213ENST00000551269 KDM5CP41229 1560 aa17.96■□□□□ 0.46
PRPF40B-213ENST00000551269 CCDC141Q6ZP82 1450 aa17.95■□□□□ 0.46
PRPF40B-213ENST00000551269 KIAA1107Q9UPP5 1409 aa17.95■□□□□ 0.46
PRPF40B-213ENST00000551269 ZMYM4Q5VZL5 1548 aa17.94■□□□□ 0.46
PRPF40B-213ENST00000551269 ARHGEF12Q9NZN5 1544 aa17.93■□□□□ 0.46
PRPF40B-213ENST00000551269 INO80Q9ULG1 1556 aaPredicted RBP17.93■□□□□ 0.46
PRPF40B-213ENST00000551269 MAST1Q9Y2H9 1570 aa17.91■□□□□ 0.46
PRPF40B-213ENST00000551269 FAM50AQ14320 339 aaKnown RBP17.91■□□□□ 0.46
PRPF40B-213ENST00000551269 KIDINS220Q9ULH0 1771 aa17.9■□□□□ 0.46
PRPF40B-213ENST00000551269 ZNF644Q9H582 1327 aaPredicted RBP17.9■□□□□ 0.46
PRPF40B-213ENST00000551269 MBD5Q9P267 1494 aa17.89■□□□□ 0.45
PRPF40B-213ENST00000551269 SHANK2Q9UPX8 1470 aa17.89■□□□□ 0.45
PRPF40B-213ENST00000551269 ATP7AQ04656 1500 aa17.89■□□□□ 0.45
PRPF40B-213ENST00000551269 ZFYVE16Q7Z3T8 1539 aa17.89■□□□□ 0.45
PRPF40B-213ENST00000551269 ARHGEF40Q8TER5 1519 aa17.89■□□□□ 0.45
PRPF40B-213ENST00000551269 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.89■□□□□ 0.45
PRPF40B-213ENST00000551269 DAPK1P53355 1430 aa17.89■□□□□ 0.45
PRPF40B-213ENST00000551269 TRAPPC8Q9Y2L5 1435 aa17.89■□□□□ 0.45
PRPF40B-213ENST00000551269 PLXNC1O60486 1568 aa17.87■□□□□ 0.45
PRPF40B-213ENST00000551269 ABCA6Q8N139 1617 aa17.87■□□□□ 0.45
PRPF40B-213ENST00000551269 HNRNPMP52272 730 aaKnown RBP eCLIP17.86■□□□□ 0.45
PRPF40B-213ENST00000551269 COL17A1Q9UMD9 1497 aaPredicted RBP17.86■□□□□ 0.45
PRPF40B-213ENST00000551269 C9orf84Q5VXU9 1444 aa17.84■□□□□ 0.45
PRPF40B-213ENST00000551269 GCC2Q8IWJ2 1684 aa17.83■□□□□ 0.45
PRPF40B-213ENST00000551269 DIP2CQ9Y2E4 1556 aa17.83■□□□□ 0.45
PRPF40B-213ENST00000551269 MAGI2Q86UL8 1455 aa17.83■□□□□ 0.45
PRPF40B-213ENST00000551269 RSPH4AQ5TD94 716 aa17.83■□□□□ 0.44
PRPF40B-213ENST00000551269 MLH3Q9UHC1 1453 aa17.82■□□□□ 0.44
PRPF40B-213ENST00000551269 ABCC5O15440 1437 aa17.82■□□□□ 0.44
PRPF40B-213ENST00000551269 RAPGEF3O95398 923 aa17.82■□□□□ 0.44
PRPF40B-213ENST00000551269 MYT1LQ9UL68 1186 aa17.82■□□□□ 0.44
PRPF40B-213ENST00000551269 SPAG9O60271 1321 aaKnown RBP17.8■□□□□ 0.44
PRPF40B-213ENST00000551269 TSPY4P0CV99 314 aa17.79■□□□□ 0.44
PRPF40B-213ENST00000551269 TSPY10P0CW01 314 aa17.79■□□□□ 0.44
PRPF40B-213ENST00000551269 RTEL1-TNFRSF6BF6WH68 1400 aa17.79■□□□□ 0.44
PRPF40B-213ENST00000551269 ADGRL2O95490 1459 aa17.78■□□□□ 0.44
PRPF40B-213ENST00000551269 ITGAEP38570 1179 aa17.78■□□□□ 0.44
PRPF40B-213ENST00000551269 AFAP1Q8N556 730 aa17.78■□□□□ 0.44
PRPF40B-213ENST00000551269 REREQ9P2R6 1566 aa17.76■□□□□ 0.43
PRPF40B-213ENST00000551269 EIF2AK4Q9P2K8 1649 aaKnown RBP17.76■□□□□ 0.43
PRPF40B-213ENST00000551269 YEATS2Q9ULM3 1422 aa17.75■□□□□ 0.43
PRPF40B-213ENST00000551269 ANKRD30AQ9BXX3 1397 aa17.74■□□□□ 0.43
PRPF40B-213ENST00000551269 DUOX2Q9NRD8 1548 aa17.73■□□□□ 0.43
PRPF40B-213ENST00000551269 BCORL1Q5H9F3 1711 aa17.72■□□□□ 0.43
PRPF40B-213ENST00000551269 SIGLEC1Q9BZZ2 1709 aa17.72■□□□□ 0.43
PRPF40B-213ENST00000551269 PTPRKQ15262 1439 aa17.72■□□□□ 0.43
PRPF40B-213ENST00000551269 A2MP01023 1474 aa17.71■□□□□ 0.43
PRPF40B-213ENST00000551269 ROCK1Q13464 1354 aa17.71■□□□□ 0.43
PRPF40B-213ENST00000551269 KIF15Q9NS87 1388 aa17.71■□□□□ 0.43
PRPF40B-213ENST00000551269 CHIC2Q9UKJ5 165 aa17.71■□□□□ 0.43
PRPF40B-213ENST00000551269 ATP10AO60312 1499 aa17.7■□□□□ 0.42
PRPF40B-213ENST00000551269 TRIM26Q12899 539 aaPredicted RBP17.69■□□□□ 0.42
PRPF40B-213ENST00000551269 NCOA1Q15788 1441 aa17.68■□□□□ 0.42
PRPF40B-213ENST00000551269 ERBINQ96RT1 1412 aa17.67■□□□□ 0.42
PRPF40B-213ENST00000551269 RNF17Q9BXT8 1623 aaKnown RBP17.66■□□□□ 0.42
PRPF40B-213ENST00000551269 FER1L4A9Z1Z3 1794 aa17.66■□□□□ 0.42
PRPF40B-213ENST00000551269 DEPDC5O75140 1603 aa17.65■□□□□ 0.42
PRPF40B-213ENST00000551269 AGLP35573 1532 aa17.65■□□□□ 0.42
PRPF40B-213ENST00000551269 HFM1A2PYH4 1435 aa17.64■□□□□ 0.42
PRPF40B-213ENST00000551269 UNC13BO14795 1591 aa17.63■□□□□ 0.41
PRPF40B-213ENST00000551269 RRP7BPQ9NSQ0 103 aa17.63■□□□□ 0.41
PRPF40B-213ENST00000551269 ZC3H13Q5T200 1668 aaKnown RBP17.63■□□□□ 0.41
PRPF40B-213ENST00000551269 CEP152O94986 1710 aa17.62■□□□□ 0.41
PRPF40B-213ENST00000551269 ANKRD50Q9ULJ7 1429 aa17.62■□□□□ 0.41
PRPF40B-213ENST00000551269 DHX29Q7Z478 1369 aaKnown RBP17.61■□□□□ 0.41
PRPF40B-213ENST00000551269 NAIPQ13075 1403 aa17.61■□□□□ 0.41
PRPF40B-213ENST00000551269 PRDM15P57071 1507 aaPredicted RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms