RNA–Protein interactions for RNA: ENST00000550893.2

SCAF11-214, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 507 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-214ENST00000550893 RYDENQ9NUL5 291 aaKnown RBP11.59□□□□□ -0.55
SCAF11-214ENST00000550893 BBXQ8WY36 941 aaPredicted RBP11.58□□□□□ -0.56
SCAF11-214ENST00000550893 CDAN1Q8IWY9 1227 aa11.56□□□□□ -0.56
SCAF11-214ENST00000550893 SNPHO15079 494 aa11.49□□□□□ -0.57
SCAF11-214ENST00000550893 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.48□□□□□ -0.57
SCAF11-214ENST00000550893 C2orf72A6NCS6 295 aa11.47□□□□□ -0.57
SCAF11-214ENST00000550893 KIF3CO14782 793 aa11.47□□□□□ -0.57
SCAF11-214ENST00000550893 ST18O60284 1047 aa11.44□□□□□ -0.58
SCAF11-214ENST00000550893 HOXB3P14651 431 aaPredicted RBP11.44□□□□□ -0.58
SCAF11-214ENST00000550893 SPRYD3Q8NCJ5 442 aa11.44□□□□□ -0.58
SCAF11-214ENST00000550893 TMC2Q8TDI7 906 aa11.44□□□□□ -0.58
SCAF11-214ENST00000550893 PAXIP1Q6ZW49 1069 aaPredicted RBP11.41□□□□□ -0.58
SCAF11-214ENST00000550893 CFAP44Q96MT7 982 aa11.4□□□□□ -0.58
SCAF11-214ENST00000550893 DOK7Q18PE1 504 aa11.39□□□□□ -0.59
SCAF11-214ENST00000550893 GPHNQ9NQX3 736 aaPredicted RBP11.39□□□□□ -0.59
SCAF11-214ENST00000550893 CADPS2Q86UW7 1296 aa11.36□□□□□ -0.59
SCAF11-214ENST00000550893 CRISPLD2Q9H0B8 497 aa11.36□□□□□ -0.59
SCAF11-214ENST00000550893 ZNF710Q8N1W2 664 aa11.35□□□□□ -0.59
SCAF11-214ENST00000550893 NCKAP5LQ9HCH0 1330 aa11.35□□□□□ -0.59
SCAF11-214ENST00000550893 FOXK1P85037 733 aa11.34□□□□□ -0.59
SCAF11-214ENST00000550893 DSG2Q14126 1118 aa11.34□□□□□ -0.59
SCAF11-214ENST00000550893 PDE4AP27815 886 aa11.33□□□□□ -0.6
SCAF11-214ENST00000550893 RIMBP2O15034 1052 aa11.32□□□□□ -0.6
SCAF11-214ENST00000550893 PLPP6Q8IY26 295 aa11.32□□□□□ -0.6
SCAF11-214ENST00000550893 MARVELD3Q96A59 401 aa11.32□□□□□ -0.6
SCAF11-214ENST00000550893 HOXB1P14653 301 aaPredicted RBP11.29□□□□□ -0.6
SCAF11-214ENST00000550893 GPR153Q6NV75 609 aa11.29□□□□□ -0.6
SCAF11-214ENST00000550893 LARP6Q9BRS8 491 aaKnown RBP11.29□□□□□ -0.6
SCAF11-214ENST00000550893 ZSWIM6Q9HCJ5 1215 aa11.29□□□□□ -0.6
SCAF11-214ENST00000550893 SLC34A2O95436 690 aa11.27□□□□□ -0.61
SCAF11-214ENST00000550893 MMRN1Q13201 1228 aa11.27□□□□□ -0.61
SCAF11-214ENST00000550893 ARSIQ5FYB1 569 aa11.27□□□□□ -0.61
SCAF11-214ENST00000550893 PPP1R15BQ5SWA1 713 aa11.27□□□□□ -0.61
SCAF11-214ENST00000550893 EMP3P54852 163 aa11.26□□□□□ -0.61
SCAF11-214ENST00000550893 SPNS2Q8IVW8 549 aa11.26□□□□□ -0.61
SCAF11-214ENST00000550893 KHSRPQ92945 711 aaKnown RBP eCLIP11.25□□□□□ -0.614e-7■■■■□ 25
SCAF11-214ENST00000550893 MFSD10Q14728 455 aa11.24□□□□□ -0.61
SCAF11-214ENST00000550893 DDX27Q96GQ7 796 aaKnown RBP11.24□□□□□ -0.61
SCAF11-214ENST00000550893 PCDHGA4Q9Y5G9 962 aa11.23□□□□□ -0.61
SCAF11-214ENST00000550893 PTCD2Q8WV60 388 aaKnown RBP11.21□□□□□ -0.61
SCAF11-214ENST00000550893 FAM205CA6NFA0 338 aa11.2□□□□□ -0.62
SCAF11-214ENST00000550893 POTEB3A0JP26 581 aa11.19□□□□□ -0.62
SCAF11-214ENST00000550893 POTEBQ6S5H4 581 aa11.19□□□□□ -0.62
SCAF11-214ENST00000550893 TSHZ2Q9NRE2 1034 aa11.19□□□□□ -0.62
SCAF11-214ENST00000550893 NUDT7P0C024 238 aa11.18□□□□□ -0.62
SCAF11-214ENST00000550893 UPF1Q92900 1129 aaKnown RBP eCLIP11.17□□□□□ -0.62
SCAF11-214ENST00000550893 HS3ST6Q96QI5 342 aa11.17□□□□□ -0.62
SCAF11-214ENST00000550893 ERBB3P21860 1342 aa11.16□□□□□ -0.62
SCAF11-214ENST00000550893 PLCB2Q00722 1185 aa11.16□□□□□ -0.62
SCAF11-214ENST00000550893 OXER1Q8TDS5 423 aa11.16□□□□□ -0.62
SCAF11-214ENST00000550893 TBC1D12O60347 775 aa11.14□□□□□ -0.63
SCAF11-214ENST00000550893 CCDC180Q9P1Z9 1646 aa11.13□□□□□ -0.63
SCAF11-214ENST00000550893 VARS2Q5ST30 1063 aaKnown RBP11.13□□□□□ -0.63
SCAF11-214ENST00000550893 KDM4FA0A1W2PPD8 638 aa11.12□□□□□ -0.63
SCAF11-214ENST00000550893 ZNF316A6NFI3 1004 aaPredicted RBP11.12□□□□□ -0.63
SCAF11-214ENST00000550893 EMILIN3Q9NT22 766 aa11.12□□□□□ -0.63
SCAF11-214ENST00000550893 CAMK2BQ13554 666 aa11.1□□□□□ -0.63
SCAF11-214ENST00000550893 LHX6Q9UPM6 363 aa11.1□□□□□ -0.63
SCAF11-214ENST00000550893 WDR70Q9NW82 654 aa11.08□□□□□ -0.64
SCAF11-214ENST00000550893 MAP3K9P80192 1104 aa11.06□□□□□ -0.64
SCAF11-214ENST00000550893 EVI5O60447 810 aa11.03□□□□□ -0.64
SCAF11-214ENST00000550893 E2F4Q16254 413 aa11.03□□□□□ -0.64
SCAF11-214ENST00000550893 ZNF687Q8N1G0 1237 aa11.03□□□□□ -0.64
SCAF11-214ENST00000550893 KRTAP3-3Q9BYR6 98 aa11.02□□□□□ -0.65
SCAF11-214ENST00000550893 KRTAP3-2Q9BYR7 98 aa11.02□□□□□ -0.65
SCAF11-214ENST00000550893 DPYSL4O14531 572 aa11.01□□□□□ -0.65
SCAF11-214ENST00000550893 HAP1P54257 671 aaPredicted RBP11.01□□□□□ -0.65
SCAF11-214ENST00000550893 ANO8Q9HCE9 1232 aaPredicted RBP11.01□□□□□ -0.65
SCAF11-214ENST00000550893 PSDA5PKW4 1024 aaPredicted RBP10.99□□□□□ -0.65
SCAF11-214ENST00000550893 PPP4R3BQ5MIZ7 849 aa10.95□□□□□ -0.66
SCAF11-214ENST00000550893 FOSBP53539 338 aa10.94□□□□□ -0.66
SCAF11-214ENST00000550893 POTEEQ6S8J3 1075 aa10.94□□□□□ -0.66
SCAF11-214ENST00000550893 ZNF454Q8N9F8 522 aa10.94□□□□□ -0.66
SCAF11-214ENST00000550893 ARIH1Q9Y4X5 557 aaPredicted RBP10.93□□□□□ -0.66
SCAF11-214ENST00000550893 JPH4Q96JJ6 628 aa10.92□□□□□ -0.66
SCAF11-214ENST00000550893 AXIN2Q9Y2T1 843 aa10.92□□□□□ -0.66
SCAF11-214ENST00000550893 PBX2P40425 430 aa10.9□□□□□ -0.66
SCAF11-214ENST00000550893 PDIA6Q15084 440 aa10.9□□□□□ -0.66
SCAF11-214ENST00000550893 SPDYE16A6NNV3 312 aaPredicted RBP10.89□□□□□ -0.67
SCAF11-214ENST00000550893 KCNV2Q8TDN2 545 aa10.89□□□□□ -0.67
SCAF11-214ENST00000550893 ARHGAP33O14559 1287 aa10.88□□□□□ -0.67
SCAF11-214ENST00000550893 PCDHGA10Q9Y5H3 936 aa10.88□□□□□ -0.67
SCAF11-214ENST00000550893 PTGER2P43116 358 aa10.87□□□□□ -0.67
SCAF11-214ENST00000550893 PSEN2P49810 448 aa10.87□□□□□ -0.67
SCAF11-214ENST00000550893 ZDHHC16Q969W1 377 aa10.87□□□□□ -0.67
SCAF11-214ENST00000550893 KDM2AQ9Y2K7 1162 aa10.87□□□□□ -0.67
SCAF11-214ENST00000550893 LSM11P83369 360 aaKnown RBP eCLIP10.86□□□□□ -0.67
SCAF11-214ENST00000550893 DDX12PQ92771 950 aa10.86□□□□□ -0.67
SCAF11-214ENST00000550893 PHF14O94880 888 aa10.85□□□□□ -0.67
SCAF11-214ENST00000550893 ANKRD13DQ6ZTN6 518 aa10.85□□□□□ -0.67
SCAF11-214ENST00000550893 ARHGEF1Q92888 912 aaKnown RBP10.85□□□□□ -0.67
SCAF11-214ENST00000550893 ADAM33Q9BZ11 813 aa10.85□□□□□ -0.67
SCAF11-214ENST00000550893 BCL2L12Q9HB09 334 aa10.85□□□□□ -0.67
SCAF11-214ENST00000550893 KCNK17Q96T54 332 aa10.84□□□□□ -0.67
SCAF11-214ENST00000550893 ABCC9O60706 1549 aa10.84□□□□□ -0.67
SCAF11-214ENST00000550893 DMRTA1Q5VZB9 504 aa10.83□□□□□ -0.68
SCAF11-214ENST00000550893 TYW1BQ6NUM6 668 aa10.83□□□□□ -0.68
SCAF11-214ENST00000550893 RNF166Q96A37 237 aaPredicted RBP10.83□□□□□ -0.68
SCAF11-214ENST00000550893 P3H3Q8IVL6 736 aa10.82□□□□□ -0.68
SCAF11-214ENST00000550893 VSIG10Q8N0Z9 540 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms