RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-208ENST00000550662 ILDR1Q86SU0 546 aaPredicted RBP14.15□□□□□ -0.14
NPAS3-208ENST00000550662 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.15□□□□□ -0.14
NPAS3-208ENST00000550662 PLSCR2Q9NRY7 297 aa14.14□□□□□ -0.15
NPAS3-208ENST00000550662 FBXO22Q8NEZ5 403 aa14.13□□□□□ -0.15
NPAS3-208ENST00000550662 CADPS2Q86UW7 1296 aa14.12□□□□□ -0.15
NPAS3-208ENST00000550662 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.11□□□□□ -0.15
NPAS3-208ENST00000550662 PCDH10Q9P2E7 1040 aa14.11□□□□□ -0.15
NPAS3-208ENST00000550662 L3MBTL3Q96JM7 780 aaPredicted RBP14.08□□□□□ -0.16
NPAS3-208ENST00000550662 PHF8Q9UPP1 1060 aa14.08□□□□□ -0.16
NPAS3-208ENST00000550662 ST18O60284 1047 aa14.07□□□□□ -0.16
NPAS3-208ENST00000550662 DPY19L2Q6NUT2 758 aa14.06□□□□□ -0.16
NPAS3-208ENST00000550662 PPP1R37O75864 691 aa14.04□□□□□ -0.16
NPAS3-208ENST00000550662 C3orf67Q6ZVT6 689 aa14.01□□□□□ -0.17
NPAS3-208ENST00000550662 KCNV2Q8TDN2 545 aa14.01□□□□□ -0.17
NPAS3-208ENST00000550662 SNPHO15079 494 aa13.96□□□□□ -0.17
NPAS3-208ENST00000550662 MS4A4AQ96JQ5 239 aa13.94□□□□□ -0.18
NPAS3-208ENST00000550662 BOLA1Q9Y3E2 137 aa13.94□□□□□ -0.18
NPAS3-208ENST00000550662 E2F4Q16254 413 aa13.92□□□□□ -0.18
NPAS3-208ENST00000550662 CDAN1Q8IWY9 1227 aa13.92□□□□□ -0.18
NPAS3-208ENST00000550662 ARHGEF1Q92888 912 aaKnown RBP13.92□□□□□ -0.18
NPAS3-208ENST00000550662 PDE4AP27815 886 aa13.91□□□□□ -0.18
NPAS3-208ENST00000550662 TMEM121BQ9BXQ6 578 aaPredicted RBP13.9□□□□□ -0.18
NPAS3-208ENST00000550662 TULP1O00294 542 aaPredicted RBP13.87□□□□□ -0.19
NPAS3-208ENST00000550662 G3V3G9 751 aa13.85□□□□□ -0.19
NPAS3-208ENST00000550662 NCKAP5LQ9HCH0 1330 aa13.85□□□□□ -0.19
NPAS3-208ENST00000550662 MFSD10Q14728 455 aa13.84□□□□□ -0.19
NPAS3-208ENST00000550662 MARVELD3Q96A59 401 aa13.84□□□□□ -0.19
NPAS3-208ENST00000550662 LARP6Q9BRS8 491 aaKnown RBP13.84□□□□□ -0.19
NPAS3-208ENST00000550662 CRISPLD2Q9H0B8 497 aa13.83□□□□□ -0.2
NPAS3-208ENST00000550662 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.8□□□□□ -0.2
NPAS3-208ENST00000550662 LMOD2Q6P5Q4 547 aa13.79□□□□□ -0.2
NPAS3-208ENST00000550662 DDX27Q96GQ7 796 aaKnown RBP13.79□□□□□ -0.2
NPAS3-208ENST00000550662 HOXB3P14651 431 aaPredicted RBP13.76□□□□□ -0.21
NPAS3-208ENST00000550662 MICALL2Q8IY33 904 aa13.76□□□□□ -0.21
NPAS3-208ENST00000550662 ARIH1Q9Y4X5 557 aaPredicted RBP13.76□□□□□ -0.21
NPAS3-208ENST00000550662 TMEM92Q6UXU6 159 aa13.73□□□□□ -0.21
NPAS3-208ENST00000550662 CAMK2BQ13554 666 aa13.72□□□□□ -0.21
NPAS3-208ENST00000550662 TESPA1A2RU30 521 aaPredicted RBP13.71□□□□□ -0.21
NPAS3-208ENST00000550662 EMP3P54852 163 aa13.7□□□□□ -0.22
NPAS3-208ENST00000550662 POTEB3A0JP26 581 aa13.69□□□□□ -0.22
NPAS3-208ENST00000550662 SMYD5Q6GMV2 418 aa13.69□□□□□ -0.22
NPAS3-208ENST00000550662 POTEBQ6S5H4 581 aa13.69□□□□□ -0.22
NPAS3-208ENST00000550662 SEMA3EO15041 775 aa13.68□□□□□ -0.22
NPAS3-208ENST00000550662 GPHNQ9NQX3 736 aaPredicted RBP13.68□□□□□ -0.22
NPAS3-208ENST00000550662 PPP1R15BQ5SWA1 713 aa13.65□□□□□ -0.22
NPAS3-208ENST00000550662 HS3ST6Q96QI5 342 aa13.65□□□□□ -0.22
NPAS3-208ENST00000550662 FAM205CA6NFA0 338 aa13.64□□□□□ -0.23
NPAS3-208ENST00000550662 HOXB1P14653 301 aaPredicted RBP13.63□□□□□ -0.23
NPAS3-208ENST00000550662 DOK7Q18PE1 504 aa13.63□□□□□ -0.23
NPAS3-208ENST00000550662 ZNF710Q8N1W2 664 aa13.61□□□□□ -0.23
NPAS3-208ENST00000550662 SPNS2Q8IVW8 549 aa13.59□□□□□ -0.23
NPAS3-208ENST00000550662 TMC2Q8TDI7 906 aa13.59□□□□□ -0.23
NPAS3-208ENST00000550662 ZC3H15Q8WU90 426 aaKnown RBP13.57□□□□□ -0.24
NPAS3-208ENST00000550662 KRTAP3-3Q9BYR6 98 aa13.56□□□□□ -0.24
NPAS3-208ENST00000550662 KRTAP3-2Q9BYR7 98 aa13.56□□□□□ -0.24
NPAS3-208ENST00000550662 FOXK1P85037 733 aa13.55□□□□□ -0.24
NPAS3-208ENST00000550662 SPDYE16A6NNV3 312 aaPredicted RBP13.53□□□□□ -0.24
NPAS3-208ENST00000550662 RIMBP2O15034 1052 aa13.53□□□□□ -0.24
NPAS3-208ENST00000550662 MMRN1Q13201 1228 aa13.53□□□□□ -0.24
NPAS3-208ENST00000550662 DSG2Q14126 1118 aa13.53□□□□□ -0.24
NPAS3-208ENST00000550662 GPR153Q6NV75 609 aa13.51□□□□□ -0.25
NPAS3-208ENST00000550662 ZSWIM6Q9HCJ5 1215 aa13.51□□□□□ -0.25
NPAS3-208ENST00000550662 ERBB3P21860 1342 aa13.49□□□□□ -0.25
NPAS3-208ENST00000550662 KIF3CO14782 793 aa13.48□□□□□ -0.25
NPAS3-208ENST00000550662 EMILIN3Q9NT22 766 aa13.48□□□□□ -0.25
NPAS3-208ENST00000550662 DPYSL4O14531 572 aa13.47□□□□□ -0.25
NPAS3-208ENST00000550662 PDIA6Q15084 440 aa13.47□□□□□ -0.25
NPAS3-208ENST00000550662 TMEM132AQ24JP5 1023 aa13.47□□□□□ -0.25
NPAS3-208ENST00000550662 PLPP6Q8IY26 295 aa13.46□□□□□ -0.25
NPAS3-208ENST00000550662 C2orf72A6NCS6 295 aa13.45□□□□□ -0.26
NPAS3-208ENST00000550662 ZMYND10O75800 440 aa13.44□□□□□ -0.26
NPAS3-208ENST00000550662 MLLT3P42568 568 aaPredicted RBP13.42□□□□□ -0.26
NPAS3-208ENST00000550662 VARS2Q5ST30 1063 aaKnown RBP13.42□□□□□ -0.26
NPAS3-208ENST00000550662 ARSIQ5FYB1 569 aa13.41□□□□□ -0.26
NPAS3-208ENST00000550662 BARGINQ6ZT62 677 aa13.39□□□□□ -0.27
NPAS3-208ENST00000550662 GPIHBP1Q8IV16 184 aa13.39□□□□□ -0.27
NPAS3-208ENST00000550662 SLC24A3Q9HC58 644 aa13.39□□□□□ -0.27
NPAS3-208ENST00000550662 KHSRPQ92945 711 aaKnown RBP eCLIP13.38□□□□□ -0.27
NPAS3-208ENST00000550662 BRPF1P55201 1214 aaPredicted RBP13.37□□□□□ -0.27
NPAS3-208ENST00000550662 RBM26Q5T8P6 1007 aaKnown RBP13.37□□□□□ -0.27
NPAS3-208ENST00000550662 MAP3K9P80192 1104 aa13.36□□□□□ -0.27
NPAS3-208ENST00000550662 ZNF687Q8N1G0 1237 aa13.36□□□□□ -0.27
NPAS3-208ENST00000550662 NEUROD2Q15784 382 aa13.32□□□□□ -0.28
NPAS3-208ENST00000550662 GTF3C3Q9Y5Q9 886 aa13.32□□□□□ -0.28
NPAS3-208ENST00000550662 SLC34A2O95436 690 aa13.3□□□□□ -0.28
NPAS3-208ENST00000550662 ZNF316A6NFI3 1004 aaPredicted RBP13.29□□□□□ -0.28
NPAS3-208ENST00000550662 OXER1Q8TDS5 423 aa13.29□□□□□ -0.28
NPAS3-208ENST00000550662 AK7Q96M32 723 aa13.29□□□□□ -0.28
NPAS3-208ENST00000550662 ERICH6Q7L0X2 663 aa13.28□□□□□ -0.28
NPAS3-208ENST00000550662 TBC1D12O60347 775 aa13.27□□□□□ -0.29
NPAS3-208ENST00000550662 KRI1Q8N9T8 703 aaKnown RBP13.27□□□□□ -0.29
NPAS3-208ENST00000550662 UPF1Q92900 1129 aaKnown RBP eCLIP13.26□□□□□ -0.29
NPAS3-208ENST00000550662 NUDT7P0C024 238 aa13.25□□□□□ -0.29
NPAS3-208ENST00000550662 PTGER2P43116 358 aa13.25□□□□□ -0.29
NPAS3-208ENST00000550662 PCDHGA4Q9Y5G9 962 aa13.25□□□□□ -0.29
NPAS3-208ENST00000550662 GRXCR2A6NFK2 248 aa13.24□□□□□ -0.29
NPAS3-208ENST00000550662 DAXXQ9UER7 740 aaPredicted RBP13.21□□□□□ -0.29
NPAS3-208ENST00000550662 LHX6Q9UPM6 363 aa13.2□□□□□ -0.3
NPAS3-208ENST00000550662 PTCD2Q8WV60 388 aaKnown RBP13.19□□□□□ -0.3
NPAS3-208ENST00000550662 GPR37O15354 613 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms