RNA–Protein interactions for RNA: ENST00000550477.5

SMARCD1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 911 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-209ENST00000550477 CLIP1P30622 1438 aa37.77■■■■□ 3.64
SMARCD1-209ENST00000550477 MYO5CQ9NQX4 1742 aa37.73■■■■□ 3.63
SMARCD1-209ENST00000550477 TROQ12816 1431 aaPredicted RBP37.71■■■■□ 3.63
SMARCD1-209ENST00000550477 YEATS2Q9ULM3 1422 aa37.71■■■■□ 3.63
SMARCD1-209ENST00000550477 RIMS1Q86UR5 1692 aaKnown RBP37.7■■■■□ 3.63
SMARCD1-209ENST00000550477 KIF14Q15058 1648 aa37.7■■■■□ 3.63
SMARCD1-209ENST00000550477 MLECQ14165 292 aa37.67■■■■□ 3.62
SMARCD1-209ENST00000550477 PCF11O94913 1555 aaKnown RBP37.66■■■■□ 3.62
SMARCD1-209ENST00000550477 PLPPR3Q6T4P5 718 aa37.65■■■■□ 3.62
SMARCD1-209ENST00000550477 MYT1LQ9UL68 1186 aa37.64■■■■□ 3.62
SMARCD1-209ENST00000550477 ATP10AO60312 1499 aa37.63■■■■□ 3.61
SMARCD1-209ENST00000550477 ARHGAP5Q13017 1502 aa37.61■■■■□ 3.61
SMARCD1-209ENST00000550477 ZNF518AQ6AHZ1 1483 aa37.59■■■■□ 3.61
SMARCD1-209ENST00000550477 C9orf84Q5VXU9 1444 aa37.58■■■■□ 3.61
SMARCD1-209ENST00000550477 LMTK3Q96Q04 1460 aa37.58■■■■□ 3.61
SMARCD1-209ENST00000550477 CCDC18Q5T9S5 1454 aa37.56■■■■□ 3.6
SMARCD1-209ENST00000550477 CASKIN1Q8WXD9 1431 aa37.54■■■■□ 3.6
SMARCD1-209ENST00000550477 AFAP1Q8N556 730 aa37.52■■■■□ 3.6
SMARCD1-209ENST00000550477 FBXO41Q8TF61 875 aa37.52■■■■□ 3.6
SMARCD1-209ENST00000550477 FER1L4A9Z1Z3 1794 aa37.5■■■■□ 3.59
SMARCD1-209ENST00000550477 SIGLEC1Q9BZZ2 1709 aa37.48■■■■□ 3.59
SMARCD1-209ENST00000550477 LRRIQ1Q96JM4 1722 aa37.47■■■■□ 3.59
SMARCD1-209ENST00000550477 HSPA2P54652 639 aa37.44■■■■□ 3.58
SMARCD1-209ENST00000550477 KDM5CP41229 1560 aa37.42■■■■□ 3.58
SMARCD1-209ENST00000550477 CDC42BPBQ9Y5S2 1711 aa37.41■■■■□ 3.58
SMARCD1-209ENST00000550477 ARHGEF12Q9NZN5 1544 aa37.41■■■■□ 3.58
SMARCD1-209ENST00000550477 FYCO1Q9BQS8 1478 aa37.38■■■■□ 3.57
SMARCD1-209ENST00000550477 ESF1Q9H501 851 aaKnown RBP37.36■■■■□ 3.57
SMARCD1-209ENST00000550477 PREX2Q70Z35 1606 aa37.36■■■■□ 3.57
SMARCD1-209ENST00000550477 MLH3Q9UHC1 1453 aa37.35■■■■□ 3.57
SMARCD1-209ENST00000550477 CEBPAP49715 358 aaPredicted RBP37.29■■■■□ 3.56
SMARCD1-209ENST00000550477 ABCC1P33527 1531 aa37.29■■■■□ 3.56
SMARCD1-209ENST00000550477 DIP2CQ9Y2E4 1556 aa37.29■■■■□ 3.56
SMARCD1-209ENST00000550477 ZNF777Q9ULD5 760 aaPredicted RBP37.28■■■■□ 3.56
SMARCD1-209ENST00000550477 REREQ9P2R6 1566 aa37.28■■■■□ 3.56
SMARCD1-209ENST00000550477 TRAPPC8Q9Y2L5 1435 aa37.27■■■■□ 3.56
SMARCD1-209ENST00000550477 SETD1BQ9UPS6 1966 aaKnown RBP37.24■■■■□ 3.55
SMARCD1-209ENST00000550477 ITSN2Q9NZM3 1697 aa37.23■■■■□ 3.55
SMARCD1-209ENST00000550477 CDC42BPAQ5VT25 1732 aa37.22■■■■□ 3.55
SMARCD1-209ENST00000550477 PREX1Q8TCU6 1659 aa37.22■■■■□ 3.55
SMARCD1-209ENST00000550477 DMRT2Q9Y5R5 561 aa37.2■■■■□ 3.55
SMARCD1-209ENST00000550477 ABCA6Q8N139 1617 aa37.2■■■■□ 3.55
SMARCD1-209ENST00000550477 AGLP35573 1532 aa37.2■■■■□ 3.55
SMARCD1-209ENST00000550477 UHRF1BP1Q6BDS2 1440 aa37.18■■■■□ 3.54
SMARCD1-209ENST00000550477 CFDP1Q9UEE9 299 aaPredicted RBP37.16■■■■□ 3.54
SMARCD1-209ENST00000550477 SPAG9O60271 1321 aaKnown RBP37.13■■■■□ 3.54
SMARCD1-209ENST00000550477 GPATCH8Q9UKJ3 1502 aaKnown RBP37.13■■■■□ 3.53
SMARCD1-209ENST00000550477 MTUS2Q5JR59 1369 aa37.13■■■■□ 3.53
SMARCD1-209ENST00000550477 CCNB3Q8WWL7 1395 aa37.13■■■■□ 3.53
SMARCD1-209ENST00000550477 KIDINS220Q9ULH0 1771 aa37.11■■■■□ 3.53
SMARCD1-209ENST00000550477 PLEKHH2Q8IVE3 1493 aa37.1■■■■□ 3.53
SMARCD1-209ENST00000550477 HNRNPMP52272 730 aaKnown RBP eCLIP37.1■■■■□ 3.53
SMARCD1-209ENST00000550477 CERKQ8TCT0 537 aa37.1■■■■□ 3.53
SMARCD1-209ENST00000550477 CNTLNQ9NXG0 1405 aa37.1■■■■□ 3.53
SMARCD1-209ENST00000550477 SAMD9LQ8IVG5 1584 aa37.07■■■■□ 3.52
SMARCD1-209ENST00000550477 KIAA1107Q9UPP5 1409 aa37.06■■■■□ 3.52
SMARCD1-209ENST00000550477 SYCP2Q9BX26 1530 aa37.05■■■■□ 3.52
SMARCD1-209ENST00000550477 C3P01024 1663 aa37.02■■■■□ 3.52
SMARCD1-209ENST00000550477 ATP7AQ04656 1500 aa36.94■■■■□ 3.5
SMARCD1-209ENST00000550477 STRCQ7RTU9 1775 aa36.91■■■■□ 3.5
SMARCD1-209ENST00000550477 SUPT6HQ7KZ85 1726 aaKnown RBP36.9■■■■□ 3.5
SMARCD1-209ENST00000550477 ZMYM3Q14202 1370 aa36.89■■■■□ 3.5
SMARCD1-209ENST00000550477 A2MP01023 1474 aa36.88■■■■□ 3.5
SMARCD1-209ENST00000550477 EHBP1L1Q8N3D4 1523 aa36.88■■■■□ 3.49
SMARCD1-209ENST00000550477 NPATQ14207 1427 aa36.86■■■■□ 3.49
SMARCD1-209ENST00000550477 GGT6Q6P531 493 aa36.86■■■■□ 3.49
SMARCD1-209ENST00000550477 PPP6R1Q9UPN7 881 aa36.86■■■■□ 3.49
SMARCD1-209ENST00000550477 MROH2AA6NES4 1674 aa36.86■■■■□ 3.49
SMARCD1-209ENST00000550477 PTPRTO14522 1441 aa36.85■■■■□ 3.49
SMARCD1-209ENST00000550477 CEP162Q5TB80 1403 aa36.85■■■■□ 3.49
SMARCD1-209ENST00000550477 INO80Q9ULG1 1556 aaPredicted RBP36.83■■■■□ 3.49
SMARCD1-209ENST00000550477 ZNF644Q9H582 1327 aaPredicted RBP36.8■■■■□ 3.48
SMARCD1-209ENST00000550477 TIAM1Q13009 1591 aa36.79■■■■□ 3.48
SMARCD1-209ENST00000550477 PLXNC1O60486 1568 aa36.78■■■■□ 3.48
SMARCD1-209ENST00000550477 RSPH4AQ5TD94 716 aa36.77■■■■□ 3.48
SMARCD1-209ENST00000550477 ADGBQ8N7X0 1667 aa36.77■■■■□ 3.48
SMARCD1-209ENST00000550477 RTEL1-TNFRSF6BF6WH68 1400 aa36.76■■■■□ 3.47
SMARCD1-209ENST00000550477 NCOA1Q15788 1441 aa36.73■■■■□ 3.47
SMARCD1-209ENST00000550477 CLTCQ00610 1675 aaKnown RBP36.73■■■■□ 3.47
SMARCD1-209ENST00000550477 MBD5Q9P267 1494 aa36.72■■■■□ 3.47
SMARCD1-209ENST00000550477 DHX29Q7Z478 1369 aaKnown RBP36.67■■■■□ 3.46
SMARCD1-209ENST00000550477 CAMSAP1Q5T5Y3 1602 aa36.67■■■■□ 3.46
SMARCD1-209ENST00000550477 NCOA2Q15596 1464 aa36.64■■■■□ 3.46
SMARCD1-209ENST00000550477 PTPRKQ15262 1439 aa36.63■■■■□ 3.45
SMARCD1-209ENST00000550477 TSPY4P0CV99 314 aa36.62■■■■□ 3.45
SMARCD1-209ENST00000550477 TSPY10P0CW01 314 aa36.62■■■■□ 3.45
SMARCD1-209ENST00000550477 PKD2Q13563 968 aa36.62■■■■□ 3.45
SMARCD1-209ENST00000550477 CCDC141Q6ZP82 1450 aa36.62■■■■□ 3.45
SMARCD1-209ENST00000550477 KIF3BO15066 747 aa36.61■■■■□ 3.45
SMARCD1-209ENST00000550477 NCKAP5LQ9HCH0 1330 aa36.59■■■■□ 3.45
SMARCD1-209ENST00000550477 CAMSAP2Q08AD1 1489 aa36.57■■■■□ 3.45
SMARCD1-209ENST00000550477 MYO3AQ8NEV4 1616 aa36.55■■■■□ 3.44
SMARCD1-209ENST00000550477 PLA2R1Q13018 1463 aa36.55■■■■□ 3.44
SMARCD1-209ENST00000550477 CEP170BQ9Y4F5 1589 aaPredicted RBP36.53■■■■□ 3.44
SMARCD1-209ENST00000550477 IQSEC2Q5JU85 1478 aa36.53■■■■□ 3.44
SMARCD1-209ENST00000550477 ZNF142P52746 1687 aaPredicted RBP36.53■■■■□ 3.44
SMARCD1-209ENST00000550477 WASHC2CQ9Y4E1 1318 aa36.51■■■■□ 3.43
SMARCD1-209ENST00000550477 LTBP4Q8N2S1 1624 aa36.51■■■■□ 3.43
SMARCD1-209ENST00000550477 VPS8Q8N3P4 1428 aa36.51■■■■□ 3.43
SMARCD1-209ENST00000550477 LOC105371045A0A1W2PR82 267 aa36.47■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms