RNA–Protein interactions for RNA: ENST00000550188.1

ARFGAP1-223, Transcript of ADP ribosylation factor GTPase activating protein 1, human

TSL 5

Gene ARFGAP1, Length 572 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARFGAP1-223	ENST00000550188	EHBP1L1	Q8N3D4	1523 aa		18.96	■□□□□ 0.63
ARFGAP1-223	ENST00000550188	POGZ	Q7Z3K3	1410 aa		18.95	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	PREX2	Q70Z35	1606 aa		18.95	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	RICTOR	Q6R327	1708 aa		18.94	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	KDM4F	A0A1W2PPD8	638 aa		18.93	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	ZMYM4	Q5VZL5	1548 aa		18.93	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	GPATCH8	Q9UKJ3	1502 aa	Known RBP	18.91	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	TIAM1	Q13009	1591 aa		18.91	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	CCNB3	Q8WWL7	1395 aa		18.91	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	MAGI2	Q86UL8	1455 aa		18.9	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	ZNF518A	Q6AHZ1	1483 aa		18.9	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	ARHGEF40	Q8TER5	1519 aa		18.9	■□□□□ 0.62
ARFGAP1-223	ENST00000550188	CDC42BPB	Q9Y5S2	1711 aa		18.89	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	ABCC1	P33527	1531 aa		18.87	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	MAP3K1	Q13233	1512 aa		18.87	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	CDC42BPA	Q5VT25	1732 aa		18.87	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	ZFYVE16	Q7Z3T8	1539 aa		18.87	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	CFDP1	Q9UEE9	299 aa	Predicted RBP	18.86	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	LRRC9	Q6ZRR7	1453 aa		18.84	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	YEATS2	Q9ULM3	1422 aa		18.84	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	ZNF777	Q9ULD5	760 aa	Predicted RBP	18.84	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	KDM5C	P41229	1560 aa		18.84	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	NCOA2	Q15596	1464 aa		18.84	■□□□□ 0.61
ARFGAP1-223	ENST00000550188	AFAP1	Q8N556	730 aa		18.83	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	ARHGEF12	Q9NZN5	1544 aa		18.83	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	SAMD9L	Q8IVG5	1584 aa		18.82	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	SUPT6H	Q7KZ85	1726 aa	Known RBP	18.82	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	PLEKHH2	Q8IVE3	1493 aa		18.82	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	TRAPPC8	Q9Y2L5	1435 aa		18.82	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	ARID4B	Q4LE39	1312 aa	Predicted RBP	18.8	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	ITSN2	Q9NZM3	1697 aa		18.8	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	KIAA1107	Q9UPP5	1409 aa		18.8	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	SYCP2	Q9BX26	1530 aa		18.79	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	APLP2	Q06481	763 aa		18.79	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	HECW2	Q9P2P5	1572 aa		18.79	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	MLH3	Q9UHC1	1453 aa		18.78	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	ATP10A	O60312	1499 aa		18.77	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	KANK4	Q5T7N3	995 aa	Predicted RBP	18.77	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	MYT1L	Q9UL68	1186 aa		18.77	■□□□□ 0.6
ARFGAP1-223	ENST00000550188	C9orf84	Q5VXU9	1444 aa		18.76	■□□□□ 0.59
ARFGAP1-223	ENST00000550188	HNRNPM	P52272	730 aa	Known RBP eCLIP	18.75	■□□□□ 0.59
ARFGAP1-223	ENST00000550188	ZNF644	Q9H582	1327 aa	Predicted RBP	18.73	■□□□□ 0.59
ARFGAP1-223	ENST00000550188	DIP2C	Q9Y2E4	1556 aa		18.72	■□□□□ 0.59
ARFGAP1-223	ENST00000550188	BCORL1	Q5H9F3	1711 aa		18.72	■□□□□ 0.59
ARFGAP1-223	ENST00000550188	SPAG9	O60271	1321 aa	Known RBP	18.72	■□□□□ 0.59
ARFGAP1-223	ENST00000550188	ADAMTSL3	P82987	1691 aa		18.71	■□□□□ 0.59
ARFGAP1-223	ENST00000550188	CAMSAP2	Q08AD1	1489 aa		18.71	■□□□□ 0.59
ARFGAP1-223	ENST00000550188	ABCA6	Q8N139	1617 aa		18.7	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	MBD5	Q9P267	1494 aa		18.7	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	RERE	Q9P2R6	1566 aa		18.69	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	SIGLEC1	Q9BZZ2	1709 aa		18.69	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	MYOM3	Q5VTT5	1437 aa		18.68	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	ATP7A	Q04656	1500 aa		18.67	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	KIDINS220	Q9ULH0	1771 aa		18.67	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	MIA2	Q96PC5	1412 aa		18.66	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	INO80	Q9ULG1	1556 aa	Predicted RBP	18.66	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	MADD	Q8WXG6	1647 aa		18.66	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	PTPRM	P28827	1452 aa		18.65	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	MLEC	Q14165	292 aa		18.65	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	CCDC141	Q6ZP82	1450 aa		18.65	■□□□□ 0.58
ARFGAP1-223	ENST00000550188	RSPH4A	Q5TD94	716 aa		18.64	■□□□□ 0.57
ARFGAP1-223	ENST00000550188	AGL	P35573	1532 aa		18.64	■□□□□ 0.57
ARFGAP1-223	ENST00000550188	RTEL1-TNFRSF6B	F6WH68	1400 aa		18.62	■□□□□ 0.57
ARFGAP1-223	ENST00000550188	ARHGEF5	Q12774	1597 aa		18.61	■□□□□ 0.57
ARFGAP1-223	ENST00000550188	A2M	P01023	1474 aa		18.58	■□□□□ 0.57
ARFGAP1-223	ENST00000550188	RIMS1	Q86UR5	1692 aa	Known RBP	18.58	■□□□□ 0.57
ARFGAP1-223	ENST00000550188	PLXNC1	O60486	1568 aa		18.57	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	FGD6	Q6ZV73	1430 aa		18.57	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	TSPY4	P0CV99	314 aa		18.56	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	TSPY10	P0CW01	314 aa		18.56	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	FER1L4	A9Z1Z3	1794 aa		18.55	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	ADGB	Q8N7X0	1667 aa		18.54	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	PTPN23	Q9H3S7	1636 aa		18.52	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	TCOF1	Q13428	1488 aa	Known RBP	18.52	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	ESF1	Q9H501	851 aa	Known RBP	18.52	■□□□□ 0.56
ARFGAP1-223	ENST00000550188	DHX29	Q7Z478	1369 aa	Known RBP	18.52	■□□□□ 0.55
ARFGAP1-223	ENST00000550188	MAST1	Q9Y2H9	1570 aa		18.51	■□□□□ 0.55
ARFGAP1-223	ENST00000550188	CNTLN	Q9NXG0	1405 aa		18.49	■□□□□ 0.55
ARFGAP1-223	ENST00000550188	PLPPR3	Q6T4P5	718 aa		18.49	■□□□□ 0.55
ARFGAP1-223	ENST00000550188	SHANK2	Q9UPX8	1470 aa		18.48	■□□□□ 0.55
ARFGAP1-223	ENST00000550188	ABCC5	O15440	1437 aa		18.47	■□□□□ 0.55
ARFGAP1-223	ENST00000550188	DAPK1	P53355	1430 aa		18.46	■□□□□ 0.55
ARFGAP1-223	ENST00000550188	GGT6	Q6P531	493 aa		18.45	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	CEBPA	P49715	358 aa	Predicted RBP	18.44	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	PPP6R1	Q9UPN7	881 aa		18.44	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	DNMT1	P26358	1616 aa	Known RBP	18.44	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	KIF3B	O15066	747 aa		18.43	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	LMTK3	Q96Q04	1460 aa		18.43	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	CROCC2	H7BZ55	1655 aa		18.42	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	FAM50A	Q14320	339 aa	Known RBP	18.42	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	KIF15	Q9NS87	1388 aa		18.4	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	DUOX2	Q9NRD8	1548 aa		18.39	■□□□□ 0.54
ARFGAP1-223	ENST00000550188	MROH2A	A6NES4	1674 aa		18.39	■□□□□ 0.53
ARFGAP1-223	ENST00000550188	PPARGC1B	Q86YN6	1023 aa	Known RBP	18.39	■□□□□ 0.53
ARFGAP1-223	ENST00000550188	ZMYM3	Q14202	1370 aa		18.39	■□□□□ 0.53
ARFGAP1-223	ENST00000550188	FAM135A	Q9P2D6	1515 aa		18.39	■□□□□ 0.53
ARFGAP1-223	ENST00000550188	C3	P01024	1663 aa		18.38	■□□□□ 0.53
ARFGAP1-223	ENST00000550188	ANKRD30A	Q9BXX3	1397 aa		18.38	■□□□□ 0.53
ARFGAP1-223	ENST00000550188	KDM5D	Q9BY66	1539 aa		18.37	■□□□□ 0.53
ARFGAP1-223	ENST00000550188	EIF2AK4	Q9P2K8	1649 aa	Known RBP	18.37	■□□□□ 0.53

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms