RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 ADGRL1O94910 1474 aa20.54■□□□□ 0.88
PRPF40B-210ENST00000549547 MAP3K1Q13233 1512 aa20.53■□□□□ 0.88
PRPF40B-210ENST00000549547 RICTORQ6R327 1708 aa20.53■□□□□ 0.88
PRPF40B-210ENST00000549547 FRMPD1Q5SYB0 1578 aa20.51■□□□□ 0.87
PRPF40B-210ENST00000549547 SUPT6HQ7KZ85 1726 aaKnown RBP20.51■□□□□ 0.87
PRPF40B-210ENST00000549547 ITSN2Q9NZM3 1697 aa20.49■□□□□ 0.87
PRPF40B-210ENST00000549547 SCAPERQ9BY12 1400 aa20.48■□□□□ 0.87
PRPF40B-210ENST00000549547 RAPGEF3O95398 923 aa20.48■□□□□ 0.87
PRPF40B-210ENST00000549547 CCNB3Q8WWL7 1395 aa20.47■□□□□ 0.87
PRPF40B-210ENST00000549547 ZMYM4Q5VZL5 1548 aa20.47■□□□□ 0.87
PRPF40B-210ENST00000549547 GPATCH8Q9UKJ3 1502 aaKnown RBP20.47■□□□□ 0.87
PRPF40B-210ENST00000549547 POGZQ7Z3K3 1410 aa20.46■□□□□ 0.87
PRPF40B-210ENST00000549547 LRRC9Q6ZRR7 1453 aa20.46■□□□□ 0.87
PRPF40B-210ENST00000549547 APLP2Q06481 763 aa20.46■□□□□ 0.87
PRPF40B-210ENST00000549547 ABCC1P33527 1531 aa20.44■□□□□ 0.86
PRPF40B-210ENST00000549547 ZNF518AQ6AHZ1 1483 aa20.43■□□□□ 0.86
PRPF40B-210ENST00000549547 MAGI2Q86UL8 1455 aa20.43■□□□□ 0.86
PRPF40B-210ENST00000549547 NCOA2Q15596 1464 aa20.43■□□□□ 0.86
PRPF40B-210ENST00000549547 ARHGEF40Q8TER5 1519 aa20.42■□□□□ 0.86
PRPF40B-210ENST00000549547 PLEKHH2Q8IVE3 1493 aa20.41■□□□□ 0.86
PRPF40B-210ENST00000549547 SAMD9LQ8IVG5 1584 aa20.4■□□□□ 0.86
PRPF40B-210ENST00000549547 CFDP1Q9UEE9 299 aaPredicted RBP20.4■□□□□ 0.86
PRPF40B-210ENST00000549547 ZFYVE16Q7Z3T8 1539 aa20.39■□□□□ 0.85
PRPF40B-210ENST00000549547 KDM5CP41229 1560 aa20.38■□□□□ 0.85
PRPF40B-210ENST00000549547 ZNF777Q9ULD5 760 aaPredicted RBP20.37■□□□□ 0.85
PRPF40B-210ENST00000549547 KIAA1107Q9UPP5 1409 aa20.36■□□□□ 0.85
PRPF40B-210ENST00000549547 HECW2Q9P2P5 1572 aa20.35■□□□□ 0.85
PRPF40B-210ENST00000549547 SYCP2Q9BX26 1530 aa20.34■□□□□ 0.85
PRPF40B-210ENST00000549547 ARHGEF12Q9NZN5 1544 aa20.33■□□□□ 0.85
PRPF40B-210ENST00000549547 KANK4Q5T7N3 995 aaPredicted RBP20.32■□□□□ 0.84
PRPF40B-210ENST00000549547 AEBP2Q6ZN18 517 aaPredicted RBP20.32■□□□□ 0.84
PRPF40B-210ENST00000549547 MLH3Q9UHC1 1453 aa20.31■□□□□ 0.84
PRPF40B-210ENST00000549547 TRAPPC8Q9Y2L5 1435 aa20.31■□□□□ 0.84
PRPF40B-210ENST00000549547 AFAP1Q8N556 730 aa20.31■□□□□ 0.84
PRPF40B-210ENST00000549547 YEATS2Q9ULM3 1422 aa20.3■□□□□ 0.84
PRPF40B-210ENST00000549547 MYT1LQ9UL68 1186 aa20.28■□□□□ 0.84
PRPF40B-210ENST00000549547 ATP10AO60312 1499 aa20.28■□□□□ 0.84
PRPF40B-210ENST00000549547 CAMSAP2Q08AD1 1489 aa20.27■□□□□ 0.84
PRPF40B-210ENST00000549547 KDM4FA0A1W2PPD8 638 aa20.27■□□□□ 0.84
PRPF40B-210ENST00000549547 MYOM3Q5VTT5 1437 aa20.27■□□□□ 0.83
PRPF40B-210ENST00000549547 C9orf84Q5VXU9 1444 aa20.27■□□□□ 0.83
PRPF40B-210ENST00000549547 HNRNPMP52272 730 aaKnown RBP eCLIP20.26■□□□□ 0.83
PRPF40B-210ENST00000549547 MIA2Q96PC5 1412 aa20.26■□□□□ 0.83
PRPF40B-210ENST00000549547 ARID4BQ4LE39 1312 aaPredicted RBP20.26■□□□□ 0.83
PRPF40B-210ENST00000549547 DIP2CQ9Y2E4 1556 aa20.25■□□□□ 0.83
PRPF40B-210ENST00000549547 KIDINS220Q9ULH0 1771 aa20.25■□□□□ 0.83
PRPF40B-210ENST00000549547 REREQ9P2R6 1566 aa20.25■□□□□ 0.83
PRPF40B-210ENST00000549547 BCORL1Q5H9F3 1711 aa20.24■□□□□ 0.83
PRPF40B-210ENST00000549547 ABCA6Q8N139 1617 aa20.24■□□□□ 0.83
PRPF40B-210ENST00000549547 SPAG9O60271 1321 aaKnown RBP20.24■□□□□ 0.83
PRPF40B-210ENST00000549547 MBD5Q9P267 1494 aa20.23■□□□□ 0.83
PRPF40B-210ENST00000549547 ZNF644Q9H582 1327 aaPredicted RBP20.23■□□□□ 0.83
PRPF40B-210ENST00000549547 ATP7AQ04656 1500 aa20.22■□□□□ 0.83
PRPF40B-210ENST00000549547 ARHGEF5Q12774 1597 aa20.22■□□□□ 0.83
PRPF40B-210ENST00000549547 INO80Q9ULG1 1556 aaPredicted RBP20.22■□□□□ 0.83
PRPF40B-210ENST00000549547 RSPH4AQ5TD94 716 aa20.22■□□□□ 0.83
PRPF40B-210ENST00000549547 CCDC141Q6ZP82 1450 aa20.21■□□□□ 0.83
PRPF40B-210ENST00000549547 ADAMTSL3P82987 1691 aa20.21■□□□□ 0.83
PRPF40B-210ENST00000549547 SIGLEC1Q9BZZ2 1709 aa20.19■□□□□ 0.82
PRPF40B-210ENST00000549547 RTEL1-TNFRSF6BF6WH68 1400 aa20.17■□□□□ 0.82
PRPF40B-210ENST00000549547 ADGBQ8N7X0 1667 aa20.16■□□□□ 0.82
PRPF40B-210ENST00000549547 PTPN23Q9H3S7 1636 aa20.16■□□□□ 0.82
PRPF40B-210ENST00000549547 AGLP35573 1532 aa20.15■□□□□ 0.82
PRPF40B-210ENST00000549547 MADDQ8WXG6 1647 aa20.15■□□□□ 0.82
PRPF40B-210ENST00000549547 FGD6Q6ZV73 1430 aa20.14■□□□□ 0.81
PRPF40B-210ENST00000549547 FER1L4A9Z1Z3 1794 aa20.13■□□□□ 0.81
PRPF40B-210ENST00000549547 TSPY4P0CV99 314 aa20.12■□□□□ 0.81
PRPF40B-210ENST00000549547 TSPY10P0CW01 314 aa20.12■□□□□ 0.81
PRPF40B-210ENST00000549547 MAST1Q9Y2H9 1570 aa20.11■□□□□ 0.81
PRPF40B-210ENST00000549547 TCOF1Q13428 1488 aaKnown RBP20.11■□□□□ 0.81
PRPF40B-210ENST00000549547 RIMS1Q86UR5 1692 aaKnown RBP20.1■□□□□ 0.81
PRPF40B-210ENST00000549547 PLXNC1O60486 1568 aa20.1■□□□□ 0.81
PRPF40B-210ENST00000549547 A2MP01023 1474 aa20.1■□□□□ 0.81
PRPF40B-210ENST00000549547 CROCC2H7BZ55 1655 aa20.08■□□□□ 0.81
PRPF40B-210ENST00000549547 MLECQ14165 292 aa20.08■□□□□ 0.81
PRPF40B-210ENST00000549547 PTPRMP28827 1452 aa20.07■□□□□ 0.8
PRPF40B-210ENST00000549547 DNMT1P26358 1616 aaKnown RBP20.06■□□□□ 0.8
PRPF40B-210ENST00000549547 SHANK2Q9UPX8 1470 aa20.05■□□□□ 0.8
PRPF40B-210ENST00000549547 DHX29Q7Z478 1369 aaKnown RBP20.02■□□□□ 0.8
PRPF40B-210ENST00000549547 DAPK1P53355 1430 aa20.02■□□□□ 0.79
PRPF40B-210ENST00000549547 ABCC5O15440 1437 aa20.01■□□□□ 0.79
PRPF40B-210ENST00000549547 ESF1Q9H501 851 aaKnown RBP20■□□□□ 0.79
PRPF40B-210ENST00000549547 CNTLNQ9NXG0 1405 aa19.99■□□□□ 0.79
PRPF40B-210ENST00000549547 FAM50AQ14320 339 aaKnown RBP19.97■□□□□ 0.79
PRPF40B-210ENST00000549547 EIF2AK4Q9P2K8 1649 aaKnown RBP19.97■□□□□ 0.79
PRPF40B-210ENST00000549547 MROH2AA6NES4 1674 aa19.97■□□□□ 0.79
PRPF40B-210ENST00000549547 DUOX2Q9NRD8 1548 aa19.96■□□□□ 0.79
PRPF40B-210ENST00000549547 PPARGC1BQ86YN6 1023 aaKnown RBP19.95■□□□□ 0.78
PRPF40B-210ENST00000549547 PPP6R1Q9UPN7 881 aa19.95■□□□□ 0.78
PRPF40B-210ENST00000549547 FAM135AQ9P2D6 1515 aa19.94■□□□□ 0.78
PRPF40B-210ENST00000549547 ANKRD30AQ9BXX3 1397 aa19.93■□□□□ 0.78
PRPF40B-210ENST00000549547 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.93■□□□□ 0.78
PRPF40B-210ENST00000549547 C3P01024 1663 aa19.92■□□□□ 0.78
PRPF40B-210ENST00000549547 CLTCQ00610 1675 aaKnown RBP19.92■□□□□ 0.78
PRPF40B-210ENST00000549547 GGT6Q6P531 493 aa19.92■□□□□ 0.78
PRPF40B-210ENST00000549547 KIF15Q9NS87 1388 aa19.92■□□□□ 0.78
PRPF40B-210ENST00000549547 KIF3BO15066 747 aa19.91■□□□□ 0.78
PRPF40B-210ENST00000549547 RNF17Q9BXT8 1623 aaKnown RBP19.91■□□□□ 0.78
PRPF40B-210ENST00000549547 ERBINQ96RT1 1412 aa19.9■□□□□ 0.78
PRPF40B-210ENST00000549547 ADGRL2O95490 1459 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms