RNA–Protein interactions for RNA: ENST00000549400.1

PTPRB-207, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 4

Gene PTPRB, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-207ENST00000549400 PSEN1P49768 467 aa6.26□□□□□ -1.41
PTPRB-207ENST00000549400 DPY19L2Q6NUT2 758 aa6.26□□□□□ -1.41
PTPRB-207ENST00000549400 UNC13AQ9UPW8 1703 aa6.25□□□□□ -1.41
PTPRB-207ENST00000549400 BAZ1AQ9NRL2 1556 aaPredicted RBP6.24□□□□□ -1.41
PTPRB-207ENST00000549400 EIF5BO60841 1220 aaKnown RBP6.24□□□□□ -1.41
PTPRB-207ENST00000549400 HOXB1P14653 301 aaPredicted RBP6.24□□□□□ -1.41
PTPRB-207ENST00000549400 HOXB3P14651 431 aaPredicted RBP6.23□□□□□ -1.41
PTPRB-207ENST00000549400 RANGAP1P46060 587 aaPredicted RBP6.23□□□□□ -1.41
PTPRB-207ENST00000549400 DOK7Q18PE1 504 aa6.23□□□□□ -1.41
PTPRB-207ENST00000549400 MYT1LQ9UL68 1186 aa6.23□□□□□ -1.41
PTPRB-207ENST00000549400 BOLA1Q9Y3E2 137 aa6.23□□□□□ -1.41
PTPRB-207ENST00000549400 MROH2BQ7Z745 1585 aa6.23□□□□□ -1.41
PTPRB-207ENST00000549400 CECR2Q9BXF3 1484 aa6.22□□□□□ -1.41
PTPRB-207ENST00000549400 EIF4G1Q04637 1599 aaKnown RBP6.22□□□□□ -1.41
PTPRB-207ENST00000549400 BICRAQ9NZM4 1560 aa6.22□□□□□ -1.41
PTPRB-207ENST00000549400 RIMBP2O15034 1052 aa6.21□□□□□ -1.42
PTPRB-207ENST00000549400 BCANQ96GW7 911 aa6.21□□□□□ -1.42
PTPRB-207ENST00000549400 CABP2Q9NPB3 220 aa6.21□□□□□ -1.42
PTPRB-207ENST00000549400 PEG3Q9GZU2 1588 aa6.21□□□□□ -1.42
PTPRB-207ENST00000549400 CHRM1P11229 460 aaPredicted RBP6.2□□□□□ -1.42
PTPRB-207ENST00000549400 VARS2Q5ST30 1063 aaKnown RBP6.2□□□□□ -1.42
PTPRB-207ENST00000549400 SMARCA4P51532 1647 aa6.19□□□□□ -1.42
PTPRB-207ENST00000549400 PDAP1Q13442 181 aaKnown RBP6.19□□□□□ -1.42
PTPRB-207ENST00000549400 TPRNQ4KMQ1 711 aa6.18□□□□□ -1.42
PTPRB-207ENST00000549400 ILDR1Q86SU0 546 aaPredicted RBP6.17□□□□□ -1.42
PTPRB-207ENST00000549400 TOP2AP11388 1531 aaKnown RBP6.16□□□□□ -1.42
PTPRB-207ENST00000549400 WIZO95785 1651 aa6.15□□□□□ -1.42
PTPRB-207ENST00000549400 VASPP50552 380 aaPredicted RBP6.15□□□□□ -1.42
PTPRB-207ENST00000549400 ZNF687Q8N1G0 1237 aa6.15□□□□□ -1.42
PTPRB-207ENST00000549400 PODXL2Q9NZ53 605 aa6.15□□□□□ -1.42
PTPRB-207ENST00000549400 GTF3C3Q9Y5Q9 886 aa6.15□□□□□ -1.42
PTPRB-207ENST00000549400 ANKRD13DQ6ZTN6 518 aa6.14□□□□□ -1.43
PTPRB-207ENST00000549400 PTGER2P43116 358 aa6.13□□□□□ -1.43
PTPRB-207ENST00000549400 BCL11AQ9H165 835 aa6.13□□□□□ -1.43
PTPRB-207ENST00000549400 CIZ1Q9ULV3 898 aaPredicted RBP6.13□□□□□ -1.43
PTPRB-207ENST00000549400 PLCB2Q00722 1185 aa6.12□□□□□ -1.43
PTPRB-207ENST00000549400 ZSWIM6Q9HCJ5 1215 aa6.11□□□□□ -1.43
PTPRB-207ENST00000549400 SMARCA2P51531 1590 aa6.1□□□□□ -1.43
PTPRB-207ENST00000549400 EFCAB3Q8N7B9 438 aa6.09□□□□□ -1.43
PTPRB-207ENST00000549400 GPR153Q6NV75 609 aa6.08□□□□□ -1.44
PTPRB-207ENST00000549400 ARSIQ5FYB1 569 aa6.07□□□□□ -1.44
PTPRB-207ENST00000549400 TMEM92Q6UXU6 159 aa6.06□□□□□ -1.44
PTPRB-207ENST00000549400 MICALL2Q8IY33 904 aa6.06□□□□□ -1.44
PTPRB-207ENST00000549400 SPOCK2Q92563 424 aa6.06□□□□□ -1.44
PTPRB-207ENST00000549400 CCDC88BA6NC98 1476 aa6.05□□□□□ -1.44
PTPRB-207ENST00000549400 PLA2G2EQ9NZK7 142 aa6.05□□□□□ -1.44
PTPRB-207ENST00000549400 ATAD2BQ9ULI0 1458 aa6.04□□□□□ -1.44
PTPRB-207ENST00000549400 TMEM132AQ24JP5 1023 aa6.04□□□□□ -1.44
PTPRB-207ENST00000549400 ZNF316A6NFI3 1004 aaPredicted RBP6.03□□□□□ -1.44
PTPRB-207ENST00000549400 LSM11P83369 360 aaKnown RBP eCLIP6.03□□□□□ -1.44
PTPRB-207ENST00000549400 NPM2Q86SE8 214 aaKnown RBP6.03□□□□□ -1.44
PTPRB-207ENST00000549400 HMGXB3Q12766 1538 aa6.03□□□□□ -1.44
PTPRB-207ENST00000549400 TRIM41Q8WV44 630 aa6.02□□□□□ -1.45
PTPRB-207ENST00000549400 KHSRPQ92945 711 aaKnown RBP eCLIP6.02□□□□□ -1.45
PTPRB-207ENST00000549400 NCAPD3P42695 1498 aa6.01□□□□□ -1.45
PTPRB-207ENST00000549400 SOX12O15370 315 aa6□□□□□ -1.45
PTPRB-207ENST00000549400 HCSTQ9UBK5 93 aa6□□□□□ -1.45
PTPRB-207ENST00000549400 LOC105371045A0A1W2PR82 267 aa5.99□□□□□ -1.45
PTPRB-207ENST00000549400 IFNLR1Q8IU57 520 aaPredicted RBP5.98□□□□□ -1.45
PTPRB-207ENST00000549400 FAM9AQ8IZU1 332 aaPredicted RBP5.98□□□□□ -1.45
PTPRB-207ENST00000549400 BAZ1BQ9UIG0 1483 aaKnown RBP5.97□□□□□ -1.45
PTPRB-207ENST00000549400 PHF8Q9UPP1 1060 aa5.97□□□□□ -1.45
PTPRB-207ENST00000549400 AXIN2Q9Y2T1 843 aa5.97□□□□□ -1.45
PTPRB-207ENST00000549400 PBX2P40425 430 aa5.96□□□□□ -1.46
PTPRB-207ENST00000549400 EEA1Q15075 1411 aa5.96□□□□□ -1.46
PTPRB-207ENST00000549400 NUDT7P0C024 238 aa5.95□□□□□ -1.46
PTPRB-207ENST00000549400 HRCP23327 699 aa5.95□□□□□ -1.46
PTPRB-207ENST00000549400 TRIM26Q12899 539 aaPredicted RBP5.95□□□□□ -1.46
PTPRB-207ENST00000549400 VSIG10Q8N0Z9 540 aa5.95□□□□□ -1.46
PTPRB-207ENST00000549400 MS4A4AQ96JQ5 239 aa5.95□□□□□ -1.46
PTPRB-207ENST00000549400 CENPBP07199 599 aaPredicted RBP5.94□□□□□ -1.46
PTPRB-207ENST00000549400 HAP1P54257 671 aaPredicted RBP5.94□□□□□ -1.46
PTPRB-207ENST00000549400 LHX6Q9UPM6 363 aa5.93□□□□□ -1.46
PTPRB-207ENST00000549400 ABCC8Q09428 1581 aa5.93□□□□□ -1.46
PTPRB-207ENST00000549400 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.92□□□□□ -1.46
PTPRB-207ENST00000549400 ZFP91Q96JP5 570 aaPredicted RBP5.92□□□□□ -1.46
PTPRB-207ENST00000549400 BIVM-ERCC5R4GMW8 1640 aa5.92□□□□□ -1.46
PTPRB-207ENST00000549400 WRNQ14191 1432 aaPredicted RBP eCLIP5.91□□□□□ -1.46
PTPRB-207ENST00000549400 POTEEQ6S8J3 1075 aa5.91□□□□□ -1.46
PTPRB-207ENST00000549400 C14orf37Q86TY3 774 aa5.91□□□□□ -1.46
PTPRB-207ENST00000549400 STAC3Q96MF2 364 aa5.91□□□□□ -1.46
PTPRB-207ENST00000549400 CFTRP13569 1480 aa5.9□□□□□ -1.46
PTPRB-207ENST00000549400 SYNJ1O43426 1573 aa5.9□□□□□ -1.46
PTPRB-207ENST00000549400 TOP2BQ02880 1626 aa5.9□□□□□ -1.46
PTPRB-207ENST00000549400 RIOK3O14730 519 aaKnown RBP5.9□□□□□ -1.46
PTPRB-207ENST00000549400 NLRP6P59044 892 aa5.9□□□□□ -1.46
PTPRB-207ENST00000549400 ADGRD1Q6QNK2 874 aa5.9□□□□□ -1.46
PTPRB-207ENST00000549400 KDM2AQ9Y2K7 1162 aa5.9□□□□□ -1.46
PTPRB-207ENST00000549400 ARHGAP33O14559 1287 aa5.89□□□□□ -1.47
PTPRB-207ENST00000549400 VGFO15240 615 aaPredicted RBP5.89□□□□□ -1.47
PTPRB-207ENST00000549400 PCDHGA4Q9Y5G9 962 aa5.89□□□□□ -1.47
PTPRB-207ENST00000549400 KIF21BO75037 1637 aa5.88□□□□□ -1.47
PTPRB-207ENST00000549400 PRDM2Q13029 1718 aa5.88□□□□□ -1.47
PTPRB-207ENST00000549400 C2orf72A6NCS6 295 aa5.88□□□□□ -1.47
PTPRB-207ENST00000549400 KCTD12Q96CX2 325 aaKnown RBP5.88□□□□□ -1.47
PTPRB-207ENST00000549400 TNIKQ9UKE5 1360 aa5.86□□□□□ -1.47
PTPRB-207ENST00000549400 SOGA1O94964 1423 aa5.85□□□□□ -1.47
PTPRB-207ENST00000549400 IRX2Q9BZI1 471 aaPredicted RBP5.85□□□□□ -1.47
PTPRB-207ENST00000549400 GOLGA3Q08378 1498 aa5.84□□□□□ -1.47
PTPRB-207ENST00000549400 PSDA5PKW4 1024 aaPredicted RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms