RNA–Protein interactions for RNA: ENST00000548399.1

PRPF40B-207, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-207ENST00000548399 SCAPERQ9BY12 1400 aa21.8■■□□□ 1.08
PRPF40B-207ENST00000548399 FRMPD1Q5SYB0 1578 aa21.79■■□□□ 1.08
PRPF40B-207ENST00000548399 CCNB3Q8WWL7 1395 aa21.79■■□□□ 1.08
PRPF40B-207ENST00000548399 MAP3K1Q13233 1512 aa21.78■■□□□ 1.08
PRPF40B-207ENST00000548399 GPATCH8Q9UKJ3 1502 aaKnown RBP21.78■■□□□ 1.08
PRPF40B-207ENST00000548399 APLP2Q06481 763 aa21.76■■□□□ 1.07
PRPF40B-207ENST00000548399 POGZQ7Z3K3 1410 aa21.76■■□□□ 1.07
PRPF40B-207ENST00000548399 CDC42BPBQ9Y5S2 1711 aa21.76■■□□□ 1.07
PRPF40B-207ENST00000548399 CDC42BPAQ5VT25 1732 aa21.75■■□□□ 1.07
PRPF40B-207ENST00000548399 LRRC9Q6ZRR7 1453 aa21.75■■□□□ 1.07
PRPF40B-207ENST00000548399 RICTORQ6R327 1708 aa21.75■■□□□ 1.07
PRPF40B-207ENST00000548399 CFDP1Q9UEE9 299 aaPredicted RBP21.73■■□□□ 1.07
PRPF40B-207ENST00000548399 NCOA2Q15596 1464 aa21.71■■□□□ 1.07
PRPF40B-207ENST00000548399 ZMYM4Q5VZL5 1548 aa21.71■■□□□ 1.07
PRPF40B-207ENST00000548399 ZNF777Q9ULD5 760 aaPredicted RBP21.71■■□□□ 1.07
PRPF40B-207ENST00000548399 SUPT6HQ7KZ85 1726 aaKnown RBP21.71■■□□□ 1.07
PRPF40B-207ENST00000548399 ABCC1P33527 1531 aa21.7■■□□□ 1.07
PRPF40B-207ENST00000548399 ZNF518AQ6AHZ1 1483 aa21.7■■□□□ 1.06
PRPF40B-207ENST00000548399 KANK4Q5T7N3 995 aaPredicted RBP21.69■■□□□ 1.06
PRPF40B-207ENST00000548399 MAGI2Q86UL8 1455 aa21.69■■□□□ 1.06
PRPF40B-207ENST00000548399 ITSN2Q9NZM3 1697 aa21.67■■□□□ 1.06
PRPF40B-207ENST00000548399 ARHGEF40Q8TER5 1519 aa21.67■■□□□ 1.06
PRPF40B-207ENST00000548399 SAMD9LQ8IVG5 1584 aa21.66■■□□□ 1.06
PRPF40B-207ENST00000548399 ZFYVE16Q7Z3T8 1539 aa21.66■■□□□ 1.06
PRPF40B-207ENST00000548399 AFAP1Q8N556 730 aa21.66■■□□□ 1.06
PRPF40B-207ENST00000548399 ARHGEF12Q9NZN5 1544 aa21.65■■□□□ 1.06
PRPF40B-207ENST00000548399 PLEKHH2Q8IVE3 1493 aa21.65■■□□□ 1.06
PRPF40B-207ENST00000548399 AEBP2Q6ZN18 517 aaPredicted RBP21.64■■□□□ 1.05
PRPF40B-207ENST00000548399 TRAPPC8Q9Y2L5 1435 aa21.63■■□□□ 1.05
PRPF40B-207ENST00000548399 KDM5CP41229 1560 aa21.63■■□□□ 1.05
PRPF40B-207ENST00000548399 KDM4FA0A1W2PPD8 638 aa21.63■■□□□ 1.05
PRPF40B-207ENST00000548399 YEATS2Q9ULM3 1422 aa21.63■■□□□ 1.05
PRPF40B-207ENST00000548399 KIAA1107Q9UPP5 1409 aa21.63■■□□□ 1.05
PRPF40B-207ENST00000548399 SYCP2Q9BX26 1530 aa21.62■■□□□ 1.05
PRPF40B-207ENST00000548399 MYT1LQ9UL68 1186 aa21.6■■□□□ 1.05
PRPF40B-207ENST00000548399 HNRNPMP52272 730 aaKnown RBP eCLIP21.59■■□□□ 1.05
PRPF40B-207ENST00000548399 ZNF644Q9H582 1327 aaPredicted RBP21.58■■□□□ 1.05
PRPF40B-207ENST00000548399 HECW2Q9P2P5 1572 aa21.58■■□□□ 1.05
PRPF40B-207ENST00000548399 MLH3Q9UHC1 1453 aa21.58■■□□□ 1.04
PRPF40B-207ENST00000548399 ARID4BQ4LE39 1312 aaPredicted RBP21.57■■□□□ 1.04
PRPF40B-207ENST00000548399 MYOM3Q5VTT5 1437 aa21.55■■□□□ 1.04
PRPF40B-207ENST00000548399 ATP10AO60312 1499 aa21.55■■□□□ 1.04
PRPF40B-207ENST00000548399 CAMSAP2Q08AD1 1489 aa21.55■■□□□ 1.04
PRPF40B-207ENST00000548399 C9orf84Q5VXU9 1444 aa21.54■■□□□ 1.04
PRPF40B-207ENST00000548399 SPAG9O60271 1321 aaKnown RBP21.54■■□□□ 1.04
PRPF40B-207ENST00000548399 MBD5Q9P267 1494 aa21.52■■□□□ 1.04
PRPF40B-207ENST00000548399 MIA2Q96PC5 1412 aa21.52■■□□□ 1.04
PRPF40B-207ENST00000548399 DIP2CQ9Y2E4 1556 aa21.51■■□□□ 1.03
PRPF40B-207ENST00000548399 ABCA6Q8N139 1617 aa21.48■■□□□ 1.03
PRPF40B-207ENST00000548399 CCDC141Q6ZP82 1450 aa21.47■■□□□ 1.03
PRPF40B-207ENST00000548399 ATP7AQ04656 1500 aa21.47■■□□□ 1.03
PRPF40B-207ENST00000548399 RSPH4AQ5TD94 716 aa21.47■■□□□ 1.03
PRPF40B-207ENST00000548399 KIDINS220Q9ULH0 1771 aa21.46■■□□□ 1.03
PRPF40B-207ENST00000548399 INO80Q9ULG1 1556 aaPredicted RBP21.46■■□□□ 1.03
PRPF40B-207ENST00000548399 BCORL1Q5H9F3 1711 aa21.46■■□□□ 1.03
PRPF40B-207ENST00000548399 REREQ9P2R6 1566 aa21.45■■□□□ 1.02
PRPF40B-207ENST00000548399 SIGLEC1Q9BZZ2 1709 aa21.44■■□□□ 1.02
PRPF40B-207ENST00000548399 ARHGEF5Q12774 1597 aa21.44■■□□□ 1.02
PRPF40B-207ENST00000548399 ADAMTSL3P82987 1691 aa21.43■■□□□ 1.02
PRPF40B-207ENST00000548399 RTEL1-TNFRSF6BF6WH68 1400 aa21.42■■□□□ 1.02
PRPF40B-207ENST00000548399 MLECQ14165 292 aa21.42■■□□□ 1.02
PRPF40B-207ENST00000548399 FGD6Q6ZV73 1430 aa21.42■■□□□ 1.02
PRPF40B-207ENST00000548399 TSPY4P0CV99 314 aa21.4■■□□□ 1.02
PRPF40B-207ENST00000548399 TSPY10P0CW01 314 aa21.4■■□□□ 1.02
PRPF40B-207ENST00000548399 AGLP35573 1532 aa21.39■■□□□ 1.02
PRPF40B-207ENST00000548399 MADDQ8WXG6 1647 aa21.39■■□□□ 1.01
PRPF40B-207ENST00000548399 PTPN23Q9H3S7 1636 aa21.39■■□□□ 1.01
PRPF40B-207ENST00000548399 A2MP01023 1474 aa21.37■■□□□ 1.01
PRPF40B-207ENST00000548399 PTPRMP28827 1452 aa21.36■■□□□ 1.01
PRPF40B-207ENST00000548399 TCOF1Q13428 1488 aaKnown RBP21.36■■□□□ 1.01
PRPF40B-207ENST00000548399 PLXNC1O60486 1568 aa21.33■■□□□ 1.01
PRPF40B-207ENST00000548399 PPARGC1BQ86YN6 1023 aaKnown RBP21.33■■□□□ 1.01
PRPF40B-207ENST00000548399 ADGBQ8N7X0 1667 aa21.33■■□□□ 1
PRPF40B-207ENST00000548399 MAST1Q9Y2H9 1570 aa21.31■■□□□ 1
PRPF40B-207ENST00000548399 RIMS1Q86UR5 1692 aaKnown RBP21.31■■□□□ 1
PRPF40B-207ENST00000548399 DHX29Q7Z478 1369 aaKnown RBP21.3■■□□□ 1
PRPF40B-207ENST00000548399 ABCC5O15440 1437 aa21.29■■□□□ 1
PRPF40B-207ENST00000548399 SHANK2Q9UPX8 1470 aa21.29■■□□□ 1
PRPF40B-207ENST00000548399 FAM50AQ14320 339 aaKnown RBP21.29■■□□□ 1
PRPF40B-207ENST00000548399 DAPK1P53355 1430 aa21.29■■□□□ 1
PRPF40B-207ENST00000548399 FER1L4A9Z1Z3 1794 aa21.28■■□□□ 1
PRPF40B-207ENST00000548399 ESF1Q9H501 851 aaKnown RBP21.28■■□□□ 1
PRPF40B-207ENST00000548399 DNMT1P26358 1616 aaKnown RBP21.27■■□□□ 1
PRPF40B-207ENST00000548399 CROCC2H7BZ55 1655 aa21.24■□□□□ 0.99
PRPF40B-207ENST00000548399 PLPPR3Q6T4P5 718 aa21.23■□□□□ 0.99
PRPF40B-207ENST00000548399 CNTLNQ9NXG0 1405 aa21.22■□□□□ 0.99
PRPF40B-207ENST00000548399 GGT6Q6P531 493 aa21.22■□□□□ 0.99
PRPF40B-207ENST00000548399 KIF3BO15066 747 aa21.21■□□□□ 0.99
PRPF40B-207ENST00000548399 KIF15Q9NS87 1388 aa21.2■□□□□ 0.98
PRPF40B-207ENST00000548399 CHIC2Q9UKJ5 165 aa21.18■□□□□ 0.98
PRPF40B-207ENST00000548399 PPP6R1Q9UPN7 881 aa21.18■□□□□ 0.98
PRPF40B-207ENST00000548399 ANKRD30AQ9BXX3 1397 aa21.18■□□□□ 0.98
PRPF40B-207ENST00000548399 DUOX2Q9NRD8 1548 aa21.18■□□□□ 0.98
PRPF40B-207ENST00000548399 RRP7BPQ9NSQ0 103 aa21.17■□□□□ 0.98
PRPF40B-207ENST00000548399 CEBPAP49715 358 aaPredicted RBP21.16■□□□□ 0.98
PRPF40B-207ENST00000548399 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.15■□□□□ 0.98
PRPF40B-207ENST00000548399 EIF2AK4Q9P2K8 1649 aaKnown RBP21.14■□□□□ 0.97
PRPF40B-207ENST00000548399 ADGRL2O95490 1459 aa21.13■□□□□ 0.97
PRPF40B-207ENST00000548399 NCOA1Q15788 1441 aa21.13■□□□□ 0.97
PRPF40B-207ENST00000548399 ERBINQ96RT1 1412 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms