RNA–Protein interactions for RNA: ENST00000546849.1

NPAS3-204, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 464 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-204ENST00000546849 WDR70Q9NW82 654 aa14.14□□□□□ -0.15
NPAS3-204ENST00000546849 NBR1Q14596 966 aa14.12□□□□□ -0.15
NPAS3-204ENST00000546849 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.11□□□□□ -0.15
NPAS3-204ENST00000546849 PCDH10Q9P2E7 1040 aa14.11□□□□□ -0.15
NPAS3-204ENST00000546849 PPP1R37O75864 691 aa14.08□□□□□ -0.16
NPAS3-204ENST00000546849 L3MBTL3Q96JM7 780 aaPredicted RBP14.08□□□□□ -0.16
NPAS3-204ENST00000546849 ST18O60284 1047 aa14.07□□□□□ -0.16
NPAS3-204ENST00000546849 DPY19L2Q6NUT2 758 aa14.06□□□□□ -0.16
NPAS3-204ENST00000546849 CADPS2Q86UW7 1296 aa14.03□□□□□ -0.16
NPAS3-204ENST00000546849 P3H3Q8IVL6 736 aa14.03□□□□□ -0.16
NPAS3-204ENST00000546849 MS4A4AQ96JQ5 239 aa14.02□□□□□ -0.17
NPAS3-204ENST00000546849 C3orf67Q6ZVT6 689 aa14.01□□□□□ -0.17
NPAS3-204ENST00000546849 G3V3G9 751 aa13.97□□□□□ -0.17
NPAS3-204ENST00000546849 SNPHO15079 494 aa13.96□□□□□ -0.17
NPAS3-204ENST00000546849 BOLA1Q9Y3E2 137 aa13.94□□□□□ -0.18
NPAS3-204ENST00000546849 PDE4AP27815 886 aa13.92□□□□□ -0.18
NPAS3-204ENST00000546849 CDAN1Q8IWY9 1227 aa13.92□□□□□ -0.18
NPAS3-204ENST00000546849 TMEM121BQ9BXQ6 578 aaPredicted RBP13.9□□□□□ -0.18
NPAS3-204ENST00000546849 LARP6Q9BRS8 491 aaKnown RBP13.88□□□□□ -0.19
NPAS3-204ENST00000546849 KCNV2Q8TDN2 545 aa13.85□□□□□ -0.19
NPAS3-204ENST00000546849 E2F4Q16254 413 aa13.84□□□□□ -0.19
NPAS3-204ENST00000546849 MARVELD3Q96A59 401 aa13.84□□□□□ -0.19
NPAS3-204ENST00000546849 DDX27Q96GQ7 796 aaKnown RBP13.84□□□□□ -0.19
NPAS3-204ENST00000546849 NCKAP5LQ9HCH0 1330 aa13.83□□□□□ -0.2
NPAS3-204ENST00000546849 MICALL2Q8IY33 904 aa13.81□□□□□ -0.2
NPAS3-204ENST00000546849 CRISPLD2Q9H0B8 497 aa13.8□□□□□ -0.2
NPAS3-204ENST00000546849 TMC2Q8TDI7 906 aa13.79□□□□□ -0.2
NPAS3-204ENST00000546849 TULP1O00294 542 aaPredicted RBP13.76□□□□□ -0.21
NPAS3-204ENST00000546849 HOXB3P14651 431 aaPredicted RBP13.76□□□□□ -0.21
NPAS3-204ENST00000546849 MFSD10Q14728 455 aa13.76□□□□□ -0.21
NPAS3-204ENST00000546849 TPRNQ4KMQ1 711 aa13.76□□□□□ -0.21
NPAS3-204ENST00000546849 ARHGEF1Q92888 912 aaKnown RBP13.75□□□□□ -0.21
NPAS3-204ENST00000546849 PPP1R15BQ5SWA1 713 aa13.73□□□□□ -0.21
NPAS3-204ENST00000546849 TMEM92Q6UXU6 159 aa13.73□□□□□ -0.21
NPAS3-204ENST00000546849 GPHNQ9NQX3 736 aaPredicted RBP13.73□□□□□ -0.21
NPAS3-204ENST00000546849 EMP3P54852 163 aa13.7□□□□□ -0.22
NPAS3-204ENST00000546849 POTEB3A0JP26 581 aa13.69□□□□□ -0.22
NPAS3-204ENST00000546849 POTEBQ6S5H4 581 aa13.69□□□□□ -0.22
NPAS3-204ENST00000546849 PRKCSHP14314 528 aaPredicted RBP13.68□□□□□ -0.22
NPAS3-204ENST00000546849 HS3ST6Q96QI5 342 aa13.65□□□□□ -0.22
NPAS3-204ENST00000546849 FAM205CA6NFA0 338 aa13.64□□□□□ -0.23
NPAS3-204ENST00000546849 HOXB1P14653 301 aaPredicted RBP13.63□□□□□ -0.23
NPAS3-204ENST00000546849 DSG2Q14126 1118 aa13.63□□□□□ -0.23
NPAS3-204ENST00000546849 DOK7Q18PE1 504 aa13.63□□□□□ -0.23
NPAS3-204ENST00000546849 C2orf72A6NCS6 295 aa13.62□□□□□ -0.23
NPAS3-204ENST00000546849 CAMK2BQ13554 666 aa13.61□□□□□ -0.23
NPAS3-204ENST00000546849 ZNF710Q8N1W2 664 aa13.61□□□□□ -0.23
NPAS3-204ENST00000546849 FOXK1P85037 733 aa13.6□□□□□ -0.23
NPAS3-204ENST00000546849 SPNS2Q8IVW8 549 aa13.59□□□□□ -0.23
NPAS3-204ENST00000546849 PLPP6Q8IY26 295 aa13.59□□□□□ -0.23
NPAS3-204ENST00000546849 SMYD5Q6GMV2 418 aa13.57□□□□□ -0.24
NPAS3-204ENST00000546849 KRTAP3-3Q9BYR6 98 aa13.56□□□□□ -0.24
NPAS3-204ENST00000546849 KRTAP3-2Q9BYR7 98 aa13.56□□□□□ -0.24
NPAS3-204ENST00000546849 SEMA3EO15041 775 aa13.55□□□□□ -0.24
NPAS3-204ENST00000546849 LMOD2Q6P5Q4 547 aa13.54□□□□□ -0.24
NPAS3-204ENST00000546849 ARIH1Q9Y4X5 557 aaPredicted RBP13.54□□□□□ -0.24
NPAS3-204ENST00000546849 RIMBP2O15034 1052 aa13.53□□□□□ -0.24
NPAS3-204ENST00000546849 MMRN1Q13201 1228 aa13.53□□□□□ -0.24
NPAS3-204ENST00000546849 DPYSL4O14531 572 aa13.52□□□□□ -0.25
NPAS3-204ENST00000546849 KIF3CO14782 793 aa13.51□□□□□ -0.25
NPAS3-204ENST00000546849 GPR153Q6NV75 609 aa13.51□□□□□ -0.25
NPAS3-204ENST00000546849 ZSWIM6Q9HCJ5 1215 aa13.51□□□□□ -0.25
NPAS3-204ENST00000546849 TESPA1A2RU30 521 aaPredicted RBP13.5□□□□□ -0.25
NPAS3-204ENST00000546849 ERBB3P21860 1342 aa13.49□□□□□ -0.25
NPAS3-204ENST00000546849 MAP3K9P80192 1104 aa13.49□□□□□ -0.25
NPAS3-204ENST00000546849 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.49□□□□□ -0.25
NPAS3-204ENST00000546849 SPDYE16A6NNV3 312 aaPredicted RBP13.48□□□□□ -0.25
NPAS3-204ENST00000546849 EMILIN3Q9NT22 766 aa13.48□□□□□ -0.25
NPAS3-204ENST00000546849 UPF1Q92900 1129 aaKnown RBP eCLIP13.47□□□□□ -0.25
NPAS3-204ENST00000546849 ZNF316A6NFI3 1004 aaPredicted RBP13.46□□□□□ -0.25
NPAS3-204ENST00000546849 PDIA6Q15084 440 aa13.43□□□□□ -0.26
NPAS3-204ENST00000546849 VARS2Q5ST30 1063 aaKnown RBP13.42□□□□□ -0.26
NPAS3-204ENST00000546849 TBC1D12O60347 775 aa13.41□□□□□ -0.26
NPAS3-204ENST00000546849 ARSIQ5FYB1 569 aa13.41□□□□□ -0.26
NPAS3-204ENST00000546849 KHSRPQ92945 711 aaKnown RBP eCLIP13.38□□□□□ -0.27
NPAS3-204ENST00000546849 MLLT3P42568 568 aaPredicted RBP13.36□□□□□ -0.27
NPAS3-204ENST00000546849 ZNF687Q8N1G0 1237 aa13.36□□□□□ -0.27
NPAS3-204ENST00000546849 OXER1Q8TDS5 423 aa13.36□□□□□ -0.27
NPAS3-204ENST00000546849 GRXCR2A6NFK2 248 aa13.33□□□□□ -0.28
NPAS3-204ENST00000546849 GPIHBP1Q8IV16 184 aa13.31□□□□□ -0.28
NPAS3-204ENST00000546849 EVI5O60447 810 aa13.3□□□□□ -0.28
NPAS3-204ENST00000546849 SLC34A2O95436 690 aa13.3□□□□□ -0.28
NPAS3-204ENST00000546849 ZC3H15Q8WU90 426 aaKnown RBP13.3□□□□□ -0.28
NPAS3-204ENST00000546849 RBM26Q5T8P6 1007 aaKnown RBP13.29□□□□□ -0.28
NPAS3-204ENST00000546849 PTCD2Q8WV60 388 aaKnown RBP13.28□□□□□ -0.28
NPAS3-204ENST00000546849 NUDT7P0C024 238 aa13.25□□□□□ -0.29
NPAS3-204ENST00000546849 DDX12PQ92771 950 aa13.25□□□□□ -0.29
NPAS3-204ENST00000546849 PCDHGA4Q9Y5G9 962 aa13.25□□□□□ -0.29
NPAS3-204ENST00000546849 NUTM2FA1L443 756 aa13.21□□□□□ -0.29
NPAS3-204ENST00000546849 LHX6Q9UPM6 363 aa13.2□□□□□ -0.3
NPAS3-204ENST00000546849 PTGER2P43116 358 aa13.19□□□□□ -0.3
NPAS3-204ENST00000546849 KRI1Q8N9T8 703 aaKnown RBP13.19□□□□□ -0.3
NPAS3-204ENST00000546849 KDM4FA0A1W2PPD8 638 aa13.16□□□□□ -0.3
NPAS3-204ENST00000546849 ZMYND10O75800 440 aa13.15□□□□□ -0.3
NPAS3-204ENST00000546849 OSBPP22059 807 aa13.14□□□□□ -0.31
NPAS3-204ENST00000546849 POTEEQ6S8J3 1075 aa13.14□□□□□ -0.31
NPAS3-204ENST00000546849 SLC24A3Q9HC58 644 aa13.14□□□□□ -0.31
NPAS3-204ENST00000546849 BARGINQ6ZT62 677 aa13.12□□□□□ -0.31
NPAS3-204ENST00000546849 ANKRD13DQ6ZTN6 518 aa13.12□□□□□ -0.31
NPAS3-204ENST00000546849 RNF166Q96A37 237 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms