RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 GPATCH8Q9UKJ3 1502 aaKnown RBP18.23■□□□□ 0.51
SNHG1-221ENST00000544983 FANCAO15360 1455 aa18.21■□□□□ 0.51
SNHG1-221ENST00000544983 PREX2Q70Z35 1606 aa18.21■□□□□ 0.51
SNHG1-221ENST00000544983 ITSN2Q9NZM3 1697 aa18.2■□□□□ 0.5
SNHG1-221ENST00000544983 CFDP1Q9UEE9 299 aaPredicted RBP18.2■□□□□ 0.5
SNHG1-221ENST00000544983 ARHGAP5Q13017 1502 aa18.19■□□□□ 0.5
SNHG1-221ENST00000544983 CDC42BPAQ5VT25 1732 aa18.19■□□□□ 0.5
SNHG1-221ENST00000544983 AKNAQ7Z591 1439 aa18.17■□□□□ 0.5
SNHG1-221ENST00000544983 CDC42BPBQ9Y5S2 1711 aa18.17■□□□□ 0.5
SNHG1-221ENST00000544983 MYOM3Q5VTT5 1437 aa18.16■□□□□ 0.5
SNHG1-221ENST00000544983 MIA2Q96PC5 1412 aa18.16■□□□□ 0.5
SNHG1-221ENST00000544983 PLEKHH2Q8IVE3 1493 aa18.15■□□□□ 0.5
SNHG1-221ENST00000544983 KDM4FA0A1W2PPD8 638 aa18.12■□□□□ 0.49
SNHG1-221ENST00000544983 KIAA1107Q9UPP5 1409 aa18.12■□□□□ 0.49
SNHG1-221ENST00000544983 ADGRL1O94910 1474 aa18.12■□□□□ 0.49
SNHG1-221ENST00000544983 KDM6BO15054 1643 aa18.1■□□□□ 0.49
SNHG1-221ENST00000544983 DENND4BO75064 1496 aaPredicted RBP18.1■□□□□ 0.49
SNHG1-221ENST00000544983 SCAPERQ9BY12 1400 aa18.09■□□□□ 0.49
SNHG1-221ENST00000544983 RSPH4AQ5TD94 716 aa18.09■□□□□ 0.49
SNHG1-221ENST00000544983 ZNF777Q9ULD5 760 aaPredicted RBP18.09■□□□□ 0.49
SNHG1-221ENST00000544983 FGD6Q6ZV73 1430 aa18.08■□□□□ 0.49
SNHG1-221ENST00000544983 ABCC1P33527 1531 aa18.07■□□□□ 0.48
SNHG1-221ENST00000544983 SAMD9LQ8IVG5 1584 aa18.06■□□□□ 0.48
SNHG1-221ENST00000544983 ZNF518AQ6AHZ1 1483 aa18.06■□□□□ 0.48
SNHG1-221ENST00000544983 COL17A1Q9UMD9 1497 aaPredicted RBP18.06■□□□□ 0.48
SNHG1-221ENST00000544983 POGZQ7Z3K3 1410 aa18.05■□□□□ 0.48
SNHG1-221ENST00000544983 CAMSAP2Q08AD1 1489 aa18.04■□□□□ 0.48
SNHG1-221ENST00000544983 PPARGC1BQ86YN6 1023 aaKnown RBP18.04■□□□□ 0.48
SNHG1-221ENST00000544983 TCOF1Q13428 1488 aaKnown RBP18.03■□□□□ 0.48
SNHG1-221ENST00000544983 ZNF644Q9H582 1327 aaPredicted RBP18.02■□□□□ 0.48
SNHG1-221ENST00000544983 RAPGEF3O95398 923 aa18.02■□□□□ 0.48
SNHG1-221ENST00000544983 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.02■□□□□ 0.47
SNHG1-221ENST00000544983 PTPN23Q9H3S7 1636 aa18.01■□□□□ 0.47
SNHG1-221ENST00000544983 MAGI2Q86UL8 1455 aa18.01■□□□□ 0.47
SNHG1-221ENST00000544983 HNRNPMP52272 730 aaKnown RBP eCLIP18.01■□□□□ 0.47
SNHG1-221ENST00000544983 SYCP2Q9BX26 1530 aa18.01■□□□□ 0.47
SNHG1-221ENST00000544983 MBD5Q9P267 1494 aa18.01■□□□□ 0.47
SNHG1-221ENST00000544983 RICTORQ6R327 1708 aa18.01■□□□□ 0.47
SNHG1-221ENST00000544983 ARHGEF12Q9NZN5 1544 aa18■□□□□ 0.47
SNHG1-221ENST00000544983 ARHGEF5Q12774 1597 aa18■□□□□ 0.47
SNHG1-221ENST00000544983 ZMYM4Q5VZL5 1548 aa17.99■□□□□ 0.47
SNHG1-221ENST00000544983 KDM5CP41229 1560 aa17.99■□□□□ 0.47
SNHG1-221ENST00000544983 TRAPPC8Q9Y2L5 1435 aa17.98■□□□□ 0.47
SNHG1-221ENST00000544983 AFAP1Q8N556 730 aa17.98■□□□□ 0.47
SNHG1-221ENST00000544983 FRMPD1Q5SYB0 1578 aa17.98■□□□□ 0.47
SNHG1-221ENST00000544983 CCDC141Q6ZP82 1450 aa17.97■□□□□ 0.47
SNHG1-221ENST00000544983 RRBP1Q9P2E9 1410 aaKnown RBP17.97■□□□□ 0.47
SNHG1-221ENST00000544983 MLH3Q9UHC1 1453 aa17.96■□□□□ 0.47
SNHG1-221ENST00000544983 TSPY4P0CV99 314 aa17.96■□□□□ 0.47
SNHG1-221ENST00000544983 TSPY10P0CW01 314 aa17.96■□□□□ 0.47
SNHG1-221ENST00000544983 RTEL1-TNFRSF6BF6WH68 1400 aa17.95■□□□□ 0.46
SNHG1-221ENST00000544983 SPAG9O60271 1321 aaKnown RBP17.95■□□□□ 0.46
SNHG1-221ENST00000544983 FAM50AQ14320 339 aaKnown RBP17.94■□□□□ 0.46
SNHG1-221ENST00000544983 HECW2Q9P2P5 1572 aa17.92■□□□□ 0.46
SNHG1-221ENST00000544983 SHANK2Q9UPX8 1470 aa17.91■□□□□ 0.46
SNHG1-221ENST00000544983 DNMT1P26358 1616 aaKnown RBP17.9■□□□□ 0.46
SNHG1-221ENST00000544983 ZFYVE16Q7Z3T8 1539 aa17.9■□□□□ 0.46
SNHG1-221ENST00000544983 MYT1LQ9UL68 1186 aa17.9■□□□□ 0.46
SNHG1-221ENST00000544983 ABCC5O15440 1437 aa17.89■□□□□ 0.46
SNHG1-221ENST00000544983 DAPK1P53355 1430 aa17.89■□□□□ 0.46
SNHG1-221ENST00000544983 ARHGEF40Q8TER5 1519 aa17.88■□□□□ 0.45
SNHG1-221ENST00000544983 MAST1Q9Y2H9 1570 aa17.88■□□□□ 0.45
SNHG1-221ENST00000544983 C9orf84Q5VXU9 1444 aa17.88■□□□□ 0.45
SNHG1-221ENST00000544983 ATP7AQ04656 1500 aa17.88■□□□□ 0.45
SNHG1-221ENST00000544983 INO80Q9ULG1 1556 aaPredicted RBP17.87■□□□□ 0.45
SNHG1-221ENST00000544983 ATP10AO60312 1499 aa17.87■□□□□ 0.45
SNHG1-221ENST00000544983 KIDINS220Q9ULH0 1771 aa17.86■□□□□ 0.45
SNHG1-221ENST00000544983 YEATS2Q9ULM3 1422 aa17.85■□□□□ 0.45
SNHG1-221ENST00000544983 CROCC2H7BZ55 1655 aa17.84■□□□□ 0.45
SNHG1-221ENST00000544983 REREQ9P2R6 1566 aa17.83■□□□□ 0.45
SNHG1-221ENST00000544983 ANKRD30AQ9BXX3 1397 aa17.83■□□□□ 0.45
SNHG1-221ENST00000544983 DIP2CQ9Y2E4 1556 aa17.82■□□□□ 0.44
SNHG1-221ENST00000544983 ADGRL2O95490 1459 aa17.82■□□□□ 0.44
SNHG1-221ENST00000544983 ROCK1Q13464 1354 aa17.81■□□□□ 0.44
SNHG1-221ENST00000544983 PLXNC1O60486 1568 aa17.81■□□□□ 0.44
SNHG1-221ENST00000544983 ADGBQ8N7X0 1667 aa17.8■□□□□ 0.44
SNHG1-221ENST00000544983 FBXO41Q8TF61 875 aa17.8■□□□□ 0.44
SNHG1-221ENST00000544983 NCOA1Q15788 1441 aa17.8■□□□□ 0.44
SNHG1-221ENST00000544983 ABCA6Q8N139 1617 aa17.8■□□□□ 0.44
SNHG1-221ENST00000544983 A2MP01023 1474 aa17.79■□□□□ 0.44
SNHG1-221ENST00000544983 DHX29Q7Z478 1369 aaKnown RBP17.79■□□□□ 0.44
SNHG1-221ENST00000544983 AGLP35573 1532 aa17.77■□□□□ 0.44
SNHG1-221ENST00000544983 KIF15Q9NS87 1388 aa17.77■□□□□ 0.43
SNHG1-221ENST00000544983 DUOX2Q9NRD8 1548 aa17.77■□□□□ 0.43
SNHG1-221ENST00000544983 PTPRKQ15262 1439 aa17.76■□□□□ 0.43
SNHG1-221ENST00000544983 CHIC2Q9UKJ5 165 aa17.76■□□□□ 0.43
SNHG1-221ENST00000544983 ITGAEP38570 1179 aa17.75■□□□□ 0.43
SNHG1-221ENST00000544983 ARID4BQ4LE39 1312 aaPredicted RBP17.74■□□□□ 0.43
SNHG1-221ENST00000544983 RRP7BPQ9NSQ0 103 aa17.74■□□□□ 0.43
SNHG1-221ENST00000544983 ERBINQ96RT1 1412 aa17.72■□□□□ 0.43
SNHG1-221ENST00000544983 PPP6R1Q9UPN7 881 aa17.71■□□□□ 0.43
SNHG1-221ENST00000544983 BCORL1Q5H9F3 1711 aa17.69■□□□□ 0.42
SNHG1-221ENST00000544983 EIF2AK4Q9P2K8 1649 aaKnown RBP17.69■□□□□ 0.42
SNHG1-221ENST00000544983 ANKRD50Q9ULJ7 1429 aa17.68■□□□□ 0.42
SNHG1-221ENST00000544983 ACIN1Q9UKV3 1341 aaKnown RBP17.68■□□□□ 0.42
SNHG1-221ENST00000544983 HFM1A2PYH4 1435 aa17.67■□□□□ 0.42
SNHG1-221ENST00000544983 KIF3BO15066 747 aa17.67■□□□□ 0.42
SNHG1-221ENST00000544983 TRIM26Q12899 539 aaPredicted RBP17.67■□□□□ 0.42
SNHG1-221ENST00000544983 FAM135AQ9P2D6 1515 aa17.65■□□□□ 0.42
SNHG1-221ENST00000544983 SIGLEC1Q9BZZ2 1709 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms