RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 HOMEZQ8IX15 550 aa7.89□□□□□ -1.15
USP28-213ENST00000544967 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.89□□□□□ -1.15
USP28-213ENST00000544967 ASXL2Q76L83 1435 aa7.89□□□□□ -1.15
USP28-213ENST00000544967 PLEKHG5O94827 1062 aa7.88□□□□□ -1.15
USP28-213ENST00000544967 RICTORQ6R327 1708 aa7.88□□□□□ -1.15
USP28-213ENST00000544967 ZMYM4Q5VZL5 1548 aa7.87□□□□□ -1.15
USP28-213ENST00000544967 FRMPD1Q5SYB0 1578 aa7.87□□□□□ -1.15
USP28-213ENST00000544967 BCORL1Q5H9F3 1711 aa7.86□□□□□ -1.15
USP28-213ENST00000544967 SUPT6HQ7KZ85 1726 aaKnown RBP7.86□□□□□ -1.15
USP28-213ENST00000544967 CDK13Q14004 1512 aaKnown RBP7.86□□□□□ -1.15
USP28-213ENST00000544967 CROCC2H7BZ55 1655 aa7.85□□□□□ -1.15
USP28-213ENST00000544967 TROQ12816 1431 aaPredicted RBP7.85□□□□□ -1.15
USP28-213ENST00000544967 PODXL2Q9NZ53 605 aa7.85□□□□□ -1.15
USP28-213ENST00000544967 KDM5CP41229 1560 aa7.85□□□□□ -1.15
USP28-213ENST00000544967 REREQ9P2R6 1566 aa7.85□□□□□ -1.15
USP28-213ENST00000544967 NEO1Q92859 1461 aa7.85□□□□□ -1.15
USP28-213ENST00000544967 LOC105371045A0A1W2PR82 267 aa7.84□□□□□ -1.15
USP28-213ENST00000544967 PHLDB1Q86UU1 1377 aa7.84□□□□□ -1.16
USP28-213ENST00000544967 TEX14Q8IWB6 1497 aa7.82□□□□□ -1.16
USP28-213ENST00000544967 MAST1Q9Y2H9 1570 aa7.82□□□□□ -1.16
USP28-213ENST00000544967 ABCC1P33527 1531 aa7.82□□□□□ -1.16
USP28-213ENST00000544967 TPRNQ4KMQ1 711 aa7.82□□□□□ -1.16
USP28-213ENST00000544967 DIEXFQ68CQ4 756 aaKnown RBP7.82□□□□□ -1.16
USP28-213ENST00000544967 ARHGEF5Q12774 1597 aa7.82□□□□□ -1.16
USP28-213ENST00000544967 LRRC9Q6ZRR7 1453 aa7.81□□□□□ -1.16
USP28-213ENST00000544967 INO80Q9ULG1 1556 aaPredicted RBP7.81□□□□□ -1.16
USP28-213ENST00000544967 SAMD9LQ8IVG5 1584 aa7.8□□□□□ -1.16
USP28-213ENST00000544967 TCOF1Q13428 1488 aaKnown RBP7.8□□□□□ -1.16
USP28-213ENST00000544967 PLCH2O75038 1416 aa7.79□□□□□ -1.16
USP28-213ENST00000544967 CYB5RLQ6IPT4 315 aa7.79□□□□□ -1.16
USP28-213ENST00000544967 ARHGEF40Q8TER5 1519 aa7.78□□□□□ -1.16
USP28-213ENST00000544967 PLXNC1O60486 1568 aa7.77□□□□□ -1.17
USP28-213ENST00000544967 ADGBQ8N7X0 1667 aa7.76□□□□□ -1.17
USP28-213ENST00000544967 KDM6BO15054 1643 aa7.76□□□□□ -1.17
USP28-213ENST00000544967 GPATCH8Q9UKJ3 1502 aaKnown RBP7.76□□□□□ -1.17
USP28-213ENST00000544967 TSPOAP1O95153 1857 aa7.76□□□□□ -1.17
USP28-213ENST00000544967 KIAA1107Q9UPP5 1409 aa7.76□□□□□ -1.17
USP28-213ENST00000544967 FAM9AQ8IZU1 332 aaPredicted RBP7.76□□□□□ -1.17
USP28-213ENST00000544967 FAM135AQ9P2D6 1515 aa7.75□□□□□ -1.17
USP28-213ENST00000544967 MAGI2Q86UL8 1455 aa7.75□□□□□ -1.17
USP28-213ENST00000544967 UBTFP17480 764 aaKnown RBP7.75□□□□□ -1.17
USP28-213ENST00000544967 MIA2Q96PC5 1412 aa7.75□□□□□ -1.17
USP28-213ENST00000544967 DNMT1P26358 1616 aaKnown RBP7.75□□□□□ -1.17
USP28-213ENST00000544967 ANP32EQ9BTT0 268 aa7.75□□□□□ -1.17
USP28-213ENST00000544967 SHANK2Q9UPX8 1470 aa7.75□□□□□ -1.17
USP28-213ENST00000544967 HECW2Q9P2P5 1572 aa7.75□□□□□ -1.17
USP28-213ENST00000544967 KIDINS220Q9ULH0 1771 aa7.75□□□□□ -1.17
USP28-213ENST00000544967 PLEKHH2Q8IVE3 1493 aa7.74□□□□□ -1.17
USP28-213ENST00000544967 EIF2AK4Q9P2K8 1649 aaKnown RBP7.74□□□□□ -1.17
USP28-213ENST00000544967 SIGLEC1Q9BZZ2 1709 aa7.74□□□□□ -1.17
USP28-213ENST00000544967 NCOA2Q15596 1464 aa7.74□□□□□ -1.17
USP28-213ENST00000544967 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.74□□□□□ -1.17
USP28-213ENST00000544967 BCANQ96GW7 911 aa7.73□□□□□ -1.17
USP28-213ENST00000544967 BCL11AQ9H165 835 aa7.73□□□□□ -1.17
USP28-213ENST00000544967 CD109Q6YHK3 1445 aa7.73□□□□□ -1.17
USP28-213ENST00000544967 POGZQ7Z3K3 1410 aa7.73□□□□□ -1.17
USP28-213ENST00000544967 ZFYVE16Q7Z3T8 1539 aa7.73□□□□□ -1.17
USP28-213ENST00000544967 DEPDC5O75140 1603 aa7.73□□□□□ -1.17
USP28-213ENST00000544967 MBD5Q9P267 1494 aa7.72□□□□□ -1.17
USP28-213ENST00000544967 ABCA6Q8N139 1617 aa7.72□□□□□ -1.17
USP28-213ENST00000544967 PTPN23Q9H3S7 1636 aa7.72□□□□□ -1.17
USP28-213ENST00000544967 ZNF316A6NFI3 1004 aaPredicted RBP7.72□□□□□ -1.17
USP28-213ENST00000544967 FANCAO15360 1455 aa7.72□□□□□ -1.17
USP28-213ENST00000544967 MLH3Q9UHC1 1453 aa7.72□□□□□ -1.17
USP28-213ENST00000544967 RNF17Q9BXT8 1623 aaKnown RBP7.72□□□□□ -1.17
USP28-213ENST00000544967 AGLP35573 1532 aa7.72□□□□□ -1.17
USP28-213ENST00000544967 ARHGEF12Q9NZN5 1544 aa7.71□□□□□ -1.17
USP28-213ENST00000544967 DIP2CQ9Y2E4 1556 aa7.71□□□□□ -1.17
USP28-213ENST00000544967 COL17A1Q9UMD9 1497 aaPredicted RBP7.71□□□□□ -1.18
USP28-213ENST00000544967 MROH2AA6NES4 1674 aa7.71□□□□□ -1.18
USP28-213ENST00000544967 ADAMTSL3P82987 1691 aa7.7□□□□□ -1.18
USP28-213ENST00000544967 MYOM3Q5VTT5 1437 aa7.7□□□□□ -1.18
USP28-213ENST00000544967 ADGRL2O95490 1459 aa7.7□□□□□ -1.18
USP28-213ENST00000544967 ZNF518AQ6AHZ1 1483 aa7.69□□□□□ -1.18
USP28-213ENST00000544967 RTEL1-TNFRSF6BF6WH68 1400 aa7.69□□□□□ -1.18
USP28-213ENST00000544967 GCC2Q8IWJ2 1684 aa7.69□□□□□ -1.18
USP28-213ENST00000544967 CAMSAP2Q08AD1 1489 aa7.69□□□□□ -1.18
USP28-213ENST00000544967 AKNAQ7Z591 1439 aa7.69□□□□□ -1.18
USP28-213ENST00000544967 ZC3H13Q5T200 1668 aaKnown RBP7.69□□□□□ -1.18
USP28-213ENST00000544967 RRBP1Q9P2E9 1410 aaKnown RBP7.69□□□□□ -1.18
USP28-213ENST00000544967 NPM1P06748 294 aaKnown RBP eCLIP7.68□□□□□ -1.18
USP28-213ENST00000544967 CCER1Q8TC90 406 aaPredicted RBP7.68□□□□□ -1.18
USP28-213ENST00000544967 ARHGAP5Q13017 1502 aa7.68□□□□□ -1.18
USP28-213ENST00000544967 SYCP2Q9BX26 1530 aa7.68□□□□□ -1.18
USP28-213ENST00000544967 CDK11AQ9UQ88 783 aaPredicted RBP7.67□□□□□ -1.18
USP28-213ENST00000544967 ATP7AQ04656 1500 aa7.67□□□□□ -1.18
USP28-213ENST00000544967 ADGRL1O94910 1474 aa7.67□□□□□ -1.18
USP28-213ENST00000544967 VWDEQ8N2E2 1590 aa7.66□□□□□ -1.18
USP28-213ENST00000544967 MROH1Q8NDA8 1641 aa7.66□□□□□ -1.18
USP28-213ENST00000544967 DENND4BO75064 1496 aaPredicted RBP7.66□□□□□ -1.18
USP28-213ENST00000544967 P3H3Q8IVL6 736 aa7.66□□□□□ -1.18
USP28-213ENST00000544967 KDM5DQ9BY66 1539 aa7.66□□□□□ -1.18
USP28-213ENST00000544967 UNC13BO14795 1591 aa7.65□□□□□ -1.18
USP28-213ENST00000544967 PLEKHD1A6NEE1 506 aa7.65□□□□□ -1.18
USP28-213ENST00000544967 NPM2Q86SE8 214 aaKnown RBP7.65□□□□□ -1.18
USP28-213ENST00000544967 FGD6Q6ZV73 1430 aa7.65□□□□□ -1.18
USP28-213ENST00000544967 CCDC141Q6ZP82 1450 aa7.65□□□□□ -1.19
USP28-213ENST00000544967 PRDM15P57071 1507 aaPredicted RBP7.64□□□□□ -1.19
USP28-213ENST00000544967 MTUS2Q5JR59 1369 aa7.63□□□□□ -1.19
USP28-213ENST00000544967 FAM69CQ0P6D2 419 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms