RNA–Protein interactions for RNA: ENST00000543916.5

CD9-210, Transcript of CD9 molecule, humanhuman

TSL 1 (best)

Gene CD9, Length 969 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-210ENST00000543916 NCOA2Q15596 1464 aa23.73■■□□□ 1.39
CD9-210ENST00000543916 APLP2Q06481 763 aa23.72■■□□□ 1.39
CD9-210ENST00000543916 AKNAQ7Z591 1439 aa23.72■■□□□ 1.39
CD9-210ENST00000543916 GPATCH8Q9UKJ3 1502 aaKnown RBP23.72■■□□□ 1.39
CD9-210ENST00000543916 ITSN2Q9NZM3 1697 aa23.72■■□□□ 1.39
CD9-210ENST00000543916 PHLDB1Q86UU1 1377 aa23.71■■□□□ 1.39
CD9-210ENST00000543916 CCNB3Q8WWL7 1395 aa23.69■■□□□ 1.38
CD9-210ENST00000543916 FRMPD1Q5SYB0 1578 aa23.69■■□□□ 1.38
CD9-210ENST00000543916 RICTORQ6R327 1708 aa23.67■■□□□ 1.38
CD9-210ENST00000543916 EFCAB2Q5VUJ9 269 aa23.66■■□□□ 1.38
CD9-210ENST00000543916 ADGRL1O94910 1474 aa23.66■■□□□ 1.38
CD9-210ENST00000543916 SAMD9LQ8IVG5 1584 aa23.65■■□□□ 1.38
CD9-210ENST00000543916 ABCC1P33527 1531 aa23.63■■□□□ 1.37
CD9-210ENST00000543916 DENND4BO75064 1496 aaPredicted RBP23.62■■□□□ 1.37
CD9-210ENST00000543916 SCAPERQ9BY12 1400 aa23.6■■□□□ 1.37
CD9-210ENST00000543916 RAPGEF3O95398 923 aa23.59■■□□□ 1.37
CD9-210ENST00000543916 CFDP1Q9UEE9 299 aaPredicted RBP23.58■■□□□ 1.37
CD9-210ENST00000543916 ARHGEF12Q9NZN5 1544 aa23.58■■□□□ 1.36
CD9-210ENST00000543916 POGZQ7Z3K3 1410 aa23.58■■□□□ 1.36
CD9-210ENST00000543916 SYCP2Q9BX26 1530 aa23.56■■□□□ 1.36
CD9-210ENST00000543916 ZNF777Q9ULD5 760 aaPredicted RBP23.56■■□□□ 1.36
CD9-210ENST00000543916 ZMYM4Q5VZL5 1548 aa23.55■■□□□ 1.36
CD9-210ENST00000543916 MYOM3Q5VTT5 1437 aa23.55■■□□□ 1.36
CD9-210ENST00000543916 KDM5CP41229 1560 aa23.52■■□□□ 1.36
CD9-210ENST00000543916 CAMSAP2Q08AD1 1489 aa23.52■■□□□ 1.36
CD9-210ENST00000543916 ZNF644Q9H582 1327 aaPredicted RBP23.52■■□□□ 1.36
CD9-210ENST00000543916 ZNF518AQ6AHZ1 1483 aa23.51■■□□□ 1.35
CD9-210ENST00000543916 PLEKHH2Q8IVE3 1493 aa23.51■■□□□ 1.35
CD9-210ENST00000543916 TRAPPC8Q9Y2L5 1435 aa23.5■■□□□ 1.35
CD9-210ENST00000543916 KIAA1107Q9UPP5 1409 aa23.49■■□□□ 1.35
CD9-210ENST00000543916 MIA2Q96PC5 1412 aa23.48■■□□□ 1.35
CD9-210ENST00000543916 ARHGEF40Q8TER5 1519 aa23.48■■□□□ 1.35
CD9-210ENST00000543916 PPARGC1BQ86YN6 1023 aaKnown RBP23.47■■□□□ 1.35
CD9-210ENST00000543916 HECW2Q9P2P5 1572 aa23.47■■□□□ 1.35
CD9-210ENST00000543916 HNRNPMP52272 730 aaKnown RBP eCLIP23.46■■□□□ 1.35
CD9-210ENST00000543916 AFAP1Q8N556 730 aa23.46■■□□□ 1.35
CD9-210ENST00000543916 PTPN23Q9H3S7 1636 aa23.46■■□□□ 1.35
CD9-210ENST00000543916 MBD5Q9P267 1494 aa23.45■■□□□ 1.34
CD9-210ENST00000543916 ZFYVE16Q7Z3T8 1539 aa23.44■■□□□ 1.34
CD9-210ENST00000543916 FGD6Q6ZV73 1430 aa23.44■■□□□ 1.34
CD9-210ENST00000543916 MAGI2Q86UL8 1455 aa23.43■■□□□ 1.34
CD9-210ENST00000543916 YEATS2Q9ULM3 1422 aa23.42■■□□□ 1.34
CD9-210ENST00000543916 ARHGEF5Q12774 1597 aa23.41■■□□□ 1.34
CD9-210ENST00000543916 KIDINS220Q9ULH0 1771 aa23.41■■□□□ 1.34
CD9-210ENST00000543916 INO80Q9ULG1 1556 aaPredicted RBP23.4■■□□□ 1.34
CD9-210ENST00000543916 MLH3Q9UHC1 1453 aa23.4■■□□□ 1.34
CD9-210ENST00000543916 ABCA6Q8N139 1617 aa23.4■■□□□ 1.34
CD9-210ENST00000543916 TCOF1Q13428 1488 aaKnown RBP23.39■■□□□ 1.34
CD9-210ENST00000543916 DIP2CQ9Y2E4 1556 aa23.38■■□□□ 1.33
CD9-210ENST00000543916 SIGLEC1Q9BZZ2 1709 aa23.38■■□□□ 1.33
CD9-210ENST00000543916 CCDC141Q6ZP82 1450 aa23.37■■□□□ 1.33
CD9-210ENST00000543916 ATP7AQ04656 1500 aa23.36■■□□□ 1.33
CD9-210ENST00000543916 CROCC2H7BZ55 1655 aa23.35■■□□□ 1.33
CD9-210ENST00000543916 SPAG9O60271 1321 aaKnown RBP23.33■■□□□ 1.32
CD9-210ENST00000543916 DNMT1P26358 1616 aaKnown RBP23.32■■□□□ 1.32
CD9-210ENST00000543916 MYT1LQ9UL68 1186 aa23.31■■□□□ 1.32
CD9-210ENST00000543916 ATP10AO60312 1499 aa23.3■■□□□ 1.32
CD9-210ENST00000543916 C9orf84Q5VXU9 1444 aa23.29■■□□□ 1.32
CD9-210ENST00000543916 REREQ9P2R6 1566 aa23.29■■□□□ 1.32
CD9-210ENST00000543916 MAST1Q9Y2H9 1570 aa23.29■■□□□ 1.32
CD9-210ENST00000543916 ADGBQ8N7X0 1667 aa23.28■■□□□ 1.32
CD9-210ENST00000543916 RSPH4AQ5TD94 716 aa23.28■■□□□ 1.32
CD9-210ENST00000543916 RTEL1-TNFRSF6BF6WH68 1400 aa23.27■■□□□ 1.32
CD9-210ENST00000543916 ABCC5O15440 1437 aa23.25■■□□□ 1.31
CD9-210ENST00000543916 DAPK1P53355 1430 aa23.25■■□□□ 1.31
CD9-210ENST00000543916 BCORL1Q5H9F3 1711 aa23.24■■□□□ 1.31
CD9-210ENST00000543916 SHANK2Q9UPX8 1470 aa23.24■■□□□ 1.31
CD9-210ENST00000543916 FAM50AQ14320 339 aaKnown RBP23.23■■□□□ 1.31
CD9-210ENST00000543916 PLXNC1O60486 1568 aa23.22■■□□□ 1.31
CD9-210ENST00000543916 TSPY4P0CV99 314 aa23.21■■□□□ 1.31
CD9-210ENST00000543916 TSPY10P0CW01 314 aa23.21■■□□□ 1.31
CD9-210ENST00000543916 RRBP1Q9P2E9 1410 aaKnown RBP23.21■■□□□ 1.31
CD9-210ENST00000543916 A2MP01023 1474 aa23.19■■□□□ 1.3
CD9-210ENST00000543916 ARID4BQ4LE39 1312 aaPredicted RBP23.19■■□□□ 1.3
CD9-210ENST00000543916 ADAMTSL3P82987 1691 aa23.19■■□□□ 1.3
CD9-210ENST00000543916 AGLP35573 1532 aa23.18■■□□□ 1.3
CD9-210ENST00000543916 KDM4FA0A1W2PPD8 638 aa23.17■■□□□ 1.3
CD9-210ENST00000543916 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.16■■□□□ 1.3
CD9-210ENST00000543916 MADDQ8WXG6 1647 aa23.14■■□□□ 1.29
CD9-210ENST00000543916 PTPRKQ15262 1439 aa23.13■■□□□ 1.29
CD9-210ENST00000543916 DHX29Q7Z478 1369 aaKnown RBP23.12■■□□□ 1.29
CD9-210ENST00000543916 ADGRL2O95490 1459 aa23.11■■□□□ 1.29
CD9-210ENST00000543916 FER1L4A9Z1Z3 1794 aa23.11■■□□□ 1.29
CD9-210ENST00000543916 CHIC2Q9UKJ5 165 aa23.1■■□□□ 1.29
CD9-210ENST00000543916 MLECQ14165 292 aa23.09■■□□□ 1.29
CD9-210ENST00000543916 DUOX2Q9NRD8 1548 aa23.08■■□□□ 1.29
CD9-210ENST00000543916 KIF15Q9NS87 1388 aa23.08■■□□□ 1.29
CD9-210ENST00000543916 RIMS1Q86UR5 1692 aaKnown RBP23.08■■□□□ 1.29
CD9-210ENST00000543916 EIF2AK4Q9P2K8 1649 aaKnown RBP23.07■■□□□ 1.28
CD9-210ENST00000543916 NCOA1Q15788 1441 aa23.07■■□□□ 1.28
CD9-210ENST00000543916 ANKRD30AQ9BXX3 1397 aa23.06■■□□□ 1.28
CD9-210ENST00000543916 ITGAEP38570 1179 aa23.04■■□□□ 1.28
CD9-210ENST00000543916 RRP7BPQ9NSQ0 103 aa23.04■■□□□ 1.28
CD9-210ENST00000543916 RNF17Q9BXT8 1623 aaKnown RBP23.02■■□□□ 1.28
CD9-210ENST00000543916 ERBINQ96RT1 1412 aa23■■□□□ 1.27
CD9-210ENST00000543916 ROCK1Q13464 1354 aa23■■□□□ 1.27
CD9-210ENST00000543916 KIF3BO15066 747 aa22.99■■□□□ 1.27
CD9-210ENST00000543916 MROH1Q8NDA8 1641 aa22.99■■□□□ 1.27
CD9-210ENST00000543916 PTPRMP28827 1452 aa22.98■■□□□ 1.27
CD9-210ENST00000543916 CLTCQ00610 1675 aaKnown RBP22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms