RNA–Protein interactions for RNA: ENST00000543542.1

LTBR-212, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 367 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-212ENST00000543542 FANCAO15360 1455 aa9.79□□□□□ -0.84
LTBR-212ENST00000543542 NCOA2Q15596 1464 aa9.79□□□□□ -0.84
LTBR-212ENST00000543542 PREX2Q70Z35 1606 aa9.78□□□□□ -0.84
LTBR-212ENST00000543542 CDC42BPBQ9Y5S2 1711 aa9.78□□□□□ -0.84
LTBR-212ENST00000543542 CFDP1Q9UEE9 299 aaPredicted RBP9.77□□□□□ -0.85
LTBR-212ENST00000543542 NEO1Q92859 1461 aa9.77□□□□□ -0.85
LTBR-212ENST00000543542 AKNAQ7Z591 1439 aa9.76□□□□□ -0.85
LTBR-212ENST00000543542 ARAP3Q8WWN8 1544 aa9.76□□□□□ -0.85
LTBR-212ENST00000543542 PHLDB1Q86UU1 1377 aa9.75□□□□□ -0.85
LTBR-212ENST00000543542 GPATCH8Q9UKJ3 1502 aaKnown RBP9.75□□□□□ -0.85
LTBR-212ENST00000543542 ADGRL1O94910 1474 aa9.74□□□□□ -0.85
LTBR-212ENST00000543542 MYT1LQ9UL68 1186 aa9.74□□□□□ -0.85
LTBR-212ENST00000543542 SCAPERQ9BY12 1400 aa9.73□□□□□ -0.85
LTBR-212ENST00000543542 DENND4BO75064 1496 aaPredicted RBP9.72□□□□□ -0.85
LTBR-212ENST00000543542 MYOM3Q5VTT5 1437 aa9.72□□□□□ -0.85
LTBR-212ENST00000543542 SAMD9LQ8IVG5 1584 aa9.71□□□□□ -0.85
LTBR-212ENST00000543542 RAPGEF3O95398 923 aa9.71□□□□□ -0.86
LTBR-212ENST00000543542 HNRNPMP52272 730 aaKnown RBP eCLIP9.7□□□□□ -0.86
LTBR-212ENST00000543542 PLEKHH2Q8IVE3 1493 aa9.7□□□□□ -0.86
LTBR-212ENST00000543542 ABCC1P33527 1531 aa9.7□□□□□ -0.86
LTBR-212ENST00000543542 SYCP2Q9BX26 1530 aa9.7□□□□□ -0.86
LTBR-212ENST00000543542 CAMSAP2Q08AD1 1489 aa9.69□□□□□ -0.86
LTBR-212ENST00000543542 PTPN23Q9H3S7 1636 aa9.69□□□□□ -0.86
LTBR-212ENST00000543542 ZNF644Q9H582 1327 aaPredicted RBP9.69□□□□□ -0.86
LTBR-212ENST00000543542 COL17A1Q9UMD9 1497 aaPredicted RBP9.69□□□□□ -0.86
LTBR-212ENST00000543542 RICTORQ6R327 1708 aa9.68□□□□□ -0.86
LTBR-212ENST00000543542 MIA2Q96PC5 1412 aa9.68□□□□□ -0.86
LTBR-212ENST00000543542 FAM50AQ14320 339 aaKnown RBP9.68□□□□□ -0.86
LTBR-212ENST00000543542 ZNF518AQ6AHZ1 1483 aa9.67□□□□□ -0.86
LTBR-212ENST00000543542 FGD6Q6ZV73 1430 aa9.67□□□□□ -0.86
LTBR-212ENST00000543542 POGZQ7Z3K3 1410 aa9.67□□□□□ -0.86
LTBR-212ENST00000543542 AFAP1Q8N556 730 aa9.67□□□□□ -0.86
LTBR-212ENST00000543542 FRMPD1Q5SYB0 1578 aa9.66□□□□□ -0.86
LTBR-212ENST00000543542 ARHGEF12Q9NZN5 1544 aa9.66□□□□□ -0.86
LTBR-212ENST00000543542 KIAA1107Q9UPP5 1409 aa9.65□□□□□ -0.86
LTBR-212ENST00000543542 TRAPPC8Q9Y2L5 1435 aa9.65□□□□□ -0.86
LTBR-212ENST00000543542 SPAG9O60271 1321 aaKnown RBP9.65□□□□□ -0.86
LTBR-212ENST00000543542 TSPY4P0CV99 314 aa9.65□□□□□ -0.86
LTBR-212ENST00000543542 TSPY10P0CW01 314 aa9.65□□□□□ -0.86
LTBR-212ENST00000543542 HECW2Q9P2P5 1572 aa9.64□□□□□ -0.87
LTBR-212ENST00000543542 RSPH4AQ5TD94 716 aa9.64□□□□□ -0.87
LTBR-212ENST00000543542 ZFYVE16Q7Z3T8 1539 aa9.64□□□□□ -0.87
LTBR-212ENST00000543542 CCDC141Q6ZP82 1450 aa9.64□□□□□ -0.87
LTBR-212ENST00000543542 ZMYM4Q5VZL5 1548 aa9.63□□□□□ -0.87
LTBR-212ENST00000543542 ITGAEP38570 1179 aa9.63□□□□□ -0.87
LTBR-212ENST00000543542 KDM5CP41229 1560 aa9.63□□□□□ -0.87
LTBR-212ENST00000543542 ARHGEF5Q12774 1597 aa9.63□□□□□ -0.87
LTBR-212ENST00000543542 ARID4BQ4LE39 1312 aaPredicted RBP9.62□□□□□ -0.87
LTBR-212ENST00000543542 TCOF1Q13428 1488 aaKnown RBP9.62□□□□□ -0.87
LTBR-212ENST00000543542 MAGI2Q86UL8 1455 aa9.62□□□□□ -0.87
LTBR-212ENST00000543542 ARHGEF40Q8TER5 1519 aa9.61□□□□□ -0.87
LTBR-212ENST00000543542 MBD5Q9P267 1494 aa9.61□□□□□ -0.87
LTBR-212ENST00000543542 ATP7AQ04656 1500 aa9.61□□□□□ -0.87
LTBR-212ENST00000543542 KIDINS220Q9ULH0 1771 aa9.6□□□□□ -0.87
LTBR-212ENST00000543542 DNMT1P26358 1616 aaKnown RBP9.6□□□□□ -0.87
LTBR-212ENST00000543542 MLH3Q9UHC1 1453 aa9.6□□□□□ -0.87
LTBR-212ENST00000543542 YEATS2Q9ULM3 1422 aa9.6□□□□□ -0.87
LTBR-212ENST00000543542 CHIC2Q9UKJ5 165 aa9.6□□□□□ -0.87
LTBR-212ENST00000543542 CROCC2H7BZ55 1655 aa9.6□□□□□ -0.87
LTBR-212ENST00000543542 ABCA6Q8N139 1617 aa9.6□□□□□ -0.87
LTBR-212ENST00000543542 INO80Q9ULG1 1556 aaPredicted RBP9.59□□□□□ -0.87
LTBR-212ENST00000543542 DAPK1P53355 1430 aa9.59□□□□□ -0.87
LTBR-212ENST00000543542 ATP10AO60312 1499 aa9.59□□□□□ -0.87
LTBR-212ENST00000543542 DIP2CQ9Y2E4 1556 aa9.58□□□□□ -0.88
LTBR-212ENST00000543542 ADGBQ8N7X0 1667 aa9.58□□□□□ -0.88
LTBR-212ENST00000543542 C9orf84Q5VXU9 1444 aa9.58□□□□□ -0.88
LTBR-212ENST00000543542 RTEL1-TNFRSF6BF6WH68 1400 aa9.57□□□□□ -0.88
LTBR-212ENST00000543542 ABCC5O15440 1437 aa9.57□□□□□ -0.88
LTBR-212ENST00000543542 RRBP1Q9P2E9 1410 aaKnown RBP9.57□□□□□ -0.88
LTBR-212ENST00000543542 MAST1Q9Y2H9 1570 aa9.57□□□□□ -0.88
LTBR-212ENST00000543542 SHANK2Q9UPX8 1470 aa9.56□□□□□ -0.88
LTBR-212ENST00000543542 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.56□□□□□ -0.88
LTBR-212ENST00000543542 MLECQ14165 292 aa9.56□□□□□ -0.88
LTBR-212ENST00000543542 RRP7BPQ9NSQ0 103 aa9.56□□□□□ -0.88
LTBR-212ENST00000543542 A2MP01023 1474 aa9.55□□□□□ -0.88
LTBR-212ENST00000543542 ANKRD30AQ9BXX3 1397 aa9.55□□□□□ -0.88
LTBR-212ENST00000543542 PLXNC1O60486 1568 aa9.54□□□□□ -0.88
LTBR-212ENST00000543542 ESF1Q9H501 851 aaKnown RBP9.54□□□□□ -0.88
LTBR-212ENST00000543542 KIF15Q9NS87 1388 aa9.53□□□□□ -0.88
LTBR-212ENST00000543542 REREQ9P2R6 1566 aa9.53□□□□□ -0.88
LTBR-212ENST00000543542 DHX29Q7Z478 1369 aaKnown RBP9.52□□□□□ -0.88
LTBR-212ENST00000543542 BCORL1Q5H9F3 1711 aa9.52□□□□□ -0.89
LTBR-212ENST00000543542 GGT6Q6P531 493 aa9.52□□□□□ -0.89
LTBR-212ENST00000543542 SIGLEC1Q9BZZ2 1709 aa9.52□□□□□ -0.89
LTBR-212ENST00000543542 DUOX2Q9NRD8 1548 aa9.51□□□□□ -0.89
LTBR-212ENST00000543542 KIF3BO15066 747 aa9.51□□□□□ -0.89
LTBR-212ENST00000543542 PTPRKQ15262 1439 aa9.5□□□□□ -0.89
LTBR-212ENST00000543542 NCOA1Q15788 1441 aa9.5□□□□□ -0.89
LTBR-212ENST00000543542 PLPPR3Q6T4P5 718 aa9.5□□□□□ -0.89
LTBR-212ENST00000543542 ADGRL2O95490 1459 aa9.5□□□□□ -0.89
LTBR-212ENST00000543542 AGLP35573 1532 aa9.5□□□□□ -0.89
LTBR-212ENST00000543542 FER1L4A9Z1Z3 1794 aa9.5□□□□□ -0.89
LTBR-212ENST00000543542 ROCK1Q13464 1354 aa9.49□□□□□ -0.89
LTBR-212ENST00000543542 EIF2AK4Q9P2K8 1649 aaKnown RBP9.49□□□□□ -0.89
LTBR-212ENST00000543542 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.48□□□□□ -0.89
LTBR-212ENST00000543542 MADDQ8WXG6 1647 aa9.48□□□□□ -0.89
LTBR-212ENST00000543542 RIMS1Q86UR5 1692 aaKnown RBP9.48□□□□□ -0.89
LTBR-212ENST00000543542 ERBINQ96RT1 1412 aa9.48□□□□□ -0.89
LTBR-212ENST00000543542 AEBP2Q6ZN18 517 aaPredicted RBP9.47□□□□□ -0.89
LTBR-212ENST00000543542 ANKRD50Q9ULJ7 1429 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms