RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ZFYVE16Q7Z3T8 1539 aa21.34■■□□□ 1.01
RTN3-212ENST00000543123 POGZQ7Z3K3 1410 aa21.34■■□□□ 1.01
RTN3-212ENST00000543123 PCF11O94913 1555 aaKnown RBP21.34■■□□□ 1.01
RTN3-212ENST00000543123 SCAPERQ9BY12 1400 aa21.33■■□□□ 1.01
RTN3-212ENST00000543123 LRRIQ1Q96JM4 1722 aa21.32■■□□□ 1
RTN3-212ENST00000543123 PTPRMP28827 1452 aa21.32■■□□□ 1
RTN3-212ENST00000543123 FYCO1Q9BQS8 1478 aa21.32■■□□□ 1
RTN3-212ENST00000543123 ARHGAP5Q13017 1502 aa21.3■■□□□ 1
RTN3-212ENST00000543123 MADDQ8WXG6 1647 aa21.29■■□□□ 1
RTN3-212ENST00000543123 ZNF518AQ6AHZ1 1483 aa21.27■■□□□ 1
RTN3-212ENST00000543123 YEATS2Q9ULM3 1422 aa21.27■■□□□ 1
RTN3-212ENST00000543123 PREX2Q70Z35 1606 aa21.22■□□□□ 0.99
RTN3-212ENST00000543123 RIMS1Q86UR5 1692 aaKnown RBP21.21■□□□□ 0.99
RTN3-212ENST00000543123 C9orf84Q5VXU9 1444 aa21.21■□□□□ 0.99
RTN3-212ENST00000543123 ATP10AO60312 1499 aa21.2■□□□□ 0.98
RTN3-212ENST00000543123 KDM5CP41229 1560 aa21.2■□□□□ 0.98
RTN3-212ENST00000543123 CDC42BPBQ9Y5S2 1711 aa21.19■□□□□ 0.98
RTN3-212ENST00000543123 SIGLEC1Q9BZZ2 1709 aa21.15■□□□□ 0.98
RTN3-212ENST00000543123 ABCC1P33527 1531 aa21.15■□□□□ 0.98
RTN3-212ENST00000543123 MYT1LQ9UL68 1186 aa21.15■□□□□ 0.98
RTN3-212ENST00000543123 FER1L4A9Z1Z3 1794 aa21.14■□□□□ 0.97
RTN3-212ENST00000543123 CDC42BPAQ5VT25 1732 aa21.13■□□□□ 0.97
RTN3-212ENST00000543123 AFAP1Q8N556 730 aa21.13■□□□□ 0.97
RTN3-212ENST00000543123 MLH3Q9UHC1 1453 aa21.13■□□□□ 0.97
RTN3-212ENST00000543123 MLECQ14165 292 aa21.12■□□□□ 0.97
RTN3-212ENST00000543123 ITSN2Q9NZM3 1697 aa21.12■□□□□ 0.97
RTN3-212ENST00000543123 ARHGEF12Q9NZN5 1544 aa21.11■□□□□ 0.97
RTN3-212ENST00000543123 REREQ9P2R6 1566 aa21.1■□□□□ 0.97
RTN3-212ENST00000543123 DIP2CQ9Y2E4 1556 aa21.1■□□□□ 0.97
RTN3-212ENST00000543123 LMTK3Q96Q04 1460 aa21.09■□□□□ 0.97
RTN3-212ENST00000543123 MTUS2Q5JR59 1369 aa21.09■□□□□ 0.97
RTN3-212ENST00000543123 CEP162Q5TB80 1403 aa21.08■□□□□ 0.97
RTN3-212ENST00000543123 TRAPPC8Q9Y2L5 1435 aa21.07■□□□□ 0.96
RTN3-212ENST00000543123 GPATCH8Q9UKJ3 1502 aaKnown RBP21.06■□□□□ 0.96
RTN3-212ENST00000543123 ABCA6Q8N139 1617 aa21.06■□□□□ 0.96
RTN3-212ENST00000543123 CCNB3Q8WWL7 1395 aa21.05■□□□□ 0.96
RTN3-212ENST00000543123 PLEKHH2Q8IVE3 1493 aa21.05■□□□□ 0.96
RTN3-212ENST00000543123 PLPPR3Q6T4P5 718 aa21.04■□□□□ 0.96
RTN3-212ENST00000543123 SAMD9LQ8IVG5 1584 aa21.03■□□□□ 0.96
RTN3-212ENST00000543123 ZNF777Q9ULD5 760 aaPredicted RBP21.03■□□□□ 0.96
RTN3-212ENST00000543123 EHBP1L1Q8N3D4 1523 aa21.03■□□□□ 0.96
RTN3-212ENST00000543123 ILDR1Q86SU0 546 aaPredicted RBP21.02■□□□□ 0.96
RTN3-212ENST00000543123 CFDP1Q9UEE9 299 aaPredicted RBP21.02■□□□□ 0.96
RTN3-212ENST00000543123 AGLP35573 1532 aa21.02■□□□□ 0.96
RTN3-212ENST00000543123 SYCP2Q9BX26 1530 aa21.02■□□□□ 0.96
RTN3-212ENST00000543123 KIAA1107Q9UPP5 1409 aa21.01■□□□□ 0.95
RTN3-212ENST00000543123 KIDINS220Q9ULH0 1771 aa21■□□□□ 0.95
RTN3-212ENST00000543123 ESF1Q9H501 851 aaKnown RBP20.98■□□□□ 0.95
RTN3-212ENST00000543123 SPAG9O60271 1321 aaKnown RBP20.98■□□□□ 0.95
RTN3-212ENST00000543123 PREX1Q8TCU6 1659 aa20.96■□□□□ 0.95
RTN3-212ENST00000543123 TIAM1Q13009 1591 aa20.94■□□□□ 0.94
RTN3-212ENST00000543123 CNTLNQ9NXG0 1405 aa20.94■□□□□ 0.94
RTN3-212ENST00000543123 ATP7AQ04656 1500 aa20.94■□□□□ 0.94
RTN3-212ENST00000543123 HNRNPMP52272 730 aaKnown RBP eCLIP20.93■□□□□ 0.94
RTN3-212ENST00000543123 HSPA2P54652 639 aa20.92■□□□□ 0.94
RTN3-212ENST00000543123 INO80Q9ULG1 1556 aaPredicted RBP20.92■□□□□ 0.94
RTN3-212ENST00000543123 UHRF1BP1Q6BDS2 1440 aa20.9■□□□□ 0.94
RTN3-212ENST00000543123 SUPT6HQ7KZ85 1726 aaKnown RBP20.9■□□□□ 0.94
RTN3-212ENST00000543123 CEBPAP49715 358 aaPredicted RBP20.89■□□□□ 0.93
RTN3-212ENST00000543123 C3P01024 1663 aa20.88■□□□□ 0.93
RTN3-212ENST00000543123 SETD1BQ9UPS6 1966 aaKnown RBP20.88■□□□□ 0.93
RTN3-212ENST00000543123 VPS8Q8N3P4 1428 aa20.87■□□□□ 0.93
RTN3-212ENST00000543123 PLXNC1O60486 1568 aa20.86■□□□□ 0.93
RTN3-212ENST00000543123 A2MP01023 1474 aa20.86■□□□□ 0.93
RTN3-212ENST00000543123 NCOA2Q15596 1464 aa20.85■□□□□ 0.93
RTN3-212ENST00000543123 MROH2AA6NES4 1674 aa20.84■□□□□ 0.93
RTN3-212ENST00000543123 ADGBQ8N7X0 1667 aa20.84■□□□□ 0.93
RTN3-212ENST00000543123 FBXO41Q8TF61 875 aa20.84■□□□□ 0.93
RTN3-212ENST00000543123 MBD5Q9P267 1494 aa20.82■□□□□ 0.92
RTN3-212ENST00000543123 RTEL1-TNFRSF6BF6WH68 1400 aa20.82■□□□□ 0.92
RTN3-212ENST00000543123 ZNF644Q9H582 1327 aaPredicted RBP20.81■□□□□ 0.92
RTN3-212ENST00000543123 DMRT2Q9Y5R5 561 aa20.8■□□□□ 0.92
RTN3-212ENST00000543123 CAMSAP2Q08AD1 1489 aa20.8■□□□□ 0.92
RTN3-212ENST00000543123 CCDC141Q6ZP82 1450 aa20.8■□□□□ 0.92
RTN3-212ENST00000543123 NPATQ14207 1427 aa20.79■□□□□ 0.92
RTN3-212ENST00000543123 LOC105371045A0A1W2PR82 267 aa20.79■□□□□ 0.92
RTN3-212ENST00000543123 RSPH4AQ5TD94 716 aa20.79■□□□□ 0.92
RTN3-212ENST00000543123 LRRC9Q6ZRR7 1453 aa20.78■□□□□ 0.92
RTN3-212ENST00000543123 MAP3K1Q13233 1512 aa20.78■□□□□ 0.92
RTN3-212ENST00000543123 PPP6R1Q9UPN7 881 aa20.77■□□□□ 0.92
RTN3-212ENST00000543123 ZMYM3Q14202 1370 aa20.75■□□□□ 0.91
RTN3-212ENST00000543123 CLTCQ00610 1675 aaKnown RBP20.74■□□□□ 0.91
RTN3-212ENST00000543123 GGT6Q6P531 493 aa20.74■□□□□ 0.91
RTN3-212ENST00000543123 ARHGEF5Q12774 1597 aa20.73■□□□□ 0.91
RTN3-212ENST00000543123 DHX29Q7Z478 1369 aaKnown RBP20.72■□□□□ 0.91
RTN3-212ENST00000543123 STRCQ7RTU9 1775 aa20.72■□□□□ 0.91
RTN3-212ENST00000543123 FAM135AQ9P2D6 1515 aa20.7■□□□□ 0.9
RTN3-212ENST00000543123 TSPY4P0CV99 314 aa20.69■□□□□ 0.9
RTN3-212ENST00000543123 TSPY10P0CW01 314 aa20.69■□□□□ 0.9
RTN3-212ENST00000543123 PTPRTO14522 1441 aa20.69■□□□□ 0.9
RTN3-212ENST00000543123 CERKQ8TCT0 537 aa20.67■□□□□ 0.9
RTN3-212ENST00000543123 APLP2Q06481 763 aa20.66■□□□□ 0.9
RTN3-212ENST00000543123 PTPRKQ15262 1439 aa20.66■□□□□ 0.9
RTN3-212ENST00000543123 NCOA1Q15788 1441 aa20.66■□□□□ 0.9
RTN3-212ENST00000543123 MIA2Q96PC5 1412 aa20.66■□□□□ 0.9
RTN3-212ENST00000543123 MYO3AQ8NEV4 1616 aa20.66■□□□□ 0.9
RTN3-212ENST00000543123 ZNF142P52746 1687 aaPredicted RBP20.65■□□□□ 0.9
RTN3-212ENST00000543123 MYOM3Q5VTT5 1437 aa20.65■□□□□ 0.9
RTN3-212ENST00000543123 KDM5DQ9BY66 1539 aa20.64■□□□□ 0.9
RTN3-212ENST00000543123 KIF3BO15066 747 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms