RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 ZNF644Q9H582 1327 aaPredicted RBP11.03□□□□□ -0.64
VPS53-205ENST00000541903 DNMT1P26358 1616 aaKnown RBP11.02□□□□□ -0.64
VPS53-205ENST00000541903 DAPK1P53355 1430 aa11.02□□□□□ -0.64
VPS53-205ENST00000541903 MYO5CQ9NQX4 1742 aa11.02□□□□□ -0.65
VPS53-205ENST00000541903 MAPKBP1O60336 1514 aa11.02□□□□□ -0.65
VPS53-205ENST00000541903 ABCC5O15440 1437 aa11.01□□□□□ -0.65
VPS53-205ENST00000541903 PLCH2O75038 1416 aa11.01□□□□□ -0.65
VPS53-205ENST00000541903 PTPRKQ15262 1439 aa11.01□□□□□ -0.65
VPS53-205ENST00000541903 SETD5Q9C0A6 1442 aa11.01□□□□□ -0.65
VPS53-205ENST00000541903 PLEKHH2Q8IVE3 1493 aa11.01□□□□□ -0.65
VPS53-205ENST00000541903 ARAP3Q8WWN8 1544 aa11.01□□□□□ -0.65
VPS53-205ENST00000541903 CCER1Q8TC90 406 aaPredicted RBP11.01□□□□□ -0.65
VPS53-205ENST00000541903 ABCA9Q8IUA7 1624 aa11.01□□□□□ -0.65
VPS53-205ENST00000541903 AKNAQ7Z591 1439 aa11.01□□□□□ -0.65
VPS53-205ENST00000541903 HFM1A2PYH4 1435 aa11□□□□□ -0.65
VPS53-205ENST00000541903 SAMD9LQ8IVG5 1584 aa10.99□□□□□ -0.65
VPS53-205ENST00000541903 EFCAB2Q5VUJ9 269 aa10.99□□□□□ -0.65
VPS53-205ENST00000541903 RAB3GAP2Q9H2M9 1393 aa10.99□□□□□ -0.65
VPS53-205ENST00000541903 CDC42BPBQ9Y5S2 1711 aa10.98□□□□□ -0.65
VPS53-205ENST00000541903 HRCP23327 699 aa10.98□□□□□ -0.65
VPS53-205ENST00000541903 ROCK1Q13464 1354 aa10.98□□□□□ -0.65
VPS53-205ENST00000541903 SHANK2Q9UPX8 1470 aa10.98□□□□□ -0.65
VPS53-205ENST00000541903 ARHGEF5Q12774 1597 aa10.98□□□□□ -0.65
VPS53-205ENST00000541903 CHIC2Q9UKJ5 165 aa10.97□□□□□ -0.65
VPS53-205ENST00000541903 KIAA1107Q9UPP5 1409 aa10.97□□□□□ -0.65
VPS53-205ENST00000541903 CCDC141Q6ZP82 1450 aa10.97□□□□□ -0.65
VPS53-205ENST00000541903 SYCP2Q9BX26 1530 aa10.96□□□□□ -0.65
VPS53-205ENST00000541903 ZEB1P37275 1124 aaPredicted RBP10.96□□□□□ -0.65
VPS53-205ENST00000541903 RSPH4AQ5TD94 716 aa10.96□□□□□ -0.65
VPS53-205ENST00000541903 CROCC2H7BZ55 1655 aa10.95□□□□□ -0.66
VPS53-205ENST00000541903 ABCC1P33527 1531 aa10.95□□□□□ -0.66
VPS53-205ENST00000541903 FANCAO15360 1455 aa10.95□□□□□ -0.66
VPS53-205ENST00000541903 MBD5Q9P267 1494 aa10.95□□□□□ -0.66
VPS53-205ENST00000541903 NAIPQ13075 1403 aa10.95□□□□□ -0.66
VPS53-205ENST00000541903 C9orf84Q5VXU9 1444 aa10.95□□□□□ -0.66
VPS53-205ENST00000541903 RRP7BPQ9NSQ0 103 aa10.95□□□□□ -0.66
VPS53-205ENST00000541903 GCC2Q8IWJ2 1684 aa10.95□□□□□ -0.66
VPS53-205ENST00000541903 ADGRL2O95490 1459 aa10.94□□□□□ -0.66
VPS53-205ENST00000541903 CD109Q6YHK3 1445 aa10.94□□□□□ -0.66
VPS53-205ENST00000541903 ANKRD30AQ9BXX3 1397 aa10.94□□□□□ -0.66
VPS53-205ENST00000541903 TSPY4P0CV99 314 aa10.94□□□□□ -0.66
VPS53-205ENST00000541903 TSPY10P0CW01 314 aa10.94□□□□□ -0.66
VPS53-205ENST00000541903 HNRNPMP52272 730 aaKnown RBP eCLIP10.94□□□□□ -0.66
VPS53-205ENST00000541903 ADGBQ8N7X0 1667 aa10.93□□□□□ -0.66
VPS53-205ENST00000541903 GLI2P10070 1586 aa10.93□□□□□ -0.66
VPS53-205ENST00000541903 DHX57Q6P158 1386 aaKnown RBP10.92□□□□□ -0.66
VPS53-205ENST00000541903 CFAP74Q9C0B2 1584 aa10.92□□□□□ -0.66
VPS53-205ENST00000541903 ADGRL1O94910 1474 aa10.92□□□□□ -0.66
VPS53-205ENST00000541903 ARHGEF12Q9NZN5 1544 aa10.91□□□□□ -0.66
VPS53-205ENST00000541903 NCOA1Q15788 1441 aa10.91□□□□□ -0.66
VPS53-205ENST00000541903 DIP2BQ9P265 1576 aa10.9□□□□□ -0.66
VPS53-205ENST00000541903 MAST1Q9Y2H9 1570 aa10.9□□□□□ -0.66
VPS53-205ENST00000541903 ACIN1Q9UKV3 1341 aaKnown RBP10.9□□□□□ -0.66
VPS53-205ENST00000541903 MAP3K4Q9Y6R4 1608 aa10.89□□□□□ -0.67
VPS53-205ENST00000541903 TRAPPC8Q9Y2L5 1435 aa10.89□□□□□ -0.67
VPS53-205ENST00000541903 CLSPNQ9HAW4 1339 aa10.88□□□□□ -0.67
VPS53-205ENST00000541903 NEO1Q92859 1461 aa10.88□□□□□ -0.67
VPS53-205ENST00000541903 FAM69CQ0P6D2 419 aa10.88□□□□□ -0.67
VPS53-205ENST00000541903 SCAPERQ9BY12 1400 aa10.88□□□□□ -0.67
VPS53-205ENST00000541903 KIF15Q9NS87 1388 aa10.88□□□□□ -0.67
VPS53-205ENST00000541903 ANKRD50Q9ULJ7 1429 aa10.87□□□□□ -0.67
VPS53-205ENST00000541903 SPAG9O60271 1321 aaKnown RBP10.86□□□□□ -0.67
VPS53-205ENST00000541903 PLXNC1O60486 1568 aa10.86□□□□□ -0.67
VPS53-205ENST00000541903 RTEL1-TNFRSF6BF6WH68 1400 aa10.85□□□□□ -0.67
VPS53-205ENST00000541903 TRIM52Q96A61 297 aa10.85□□□□□ -0.67
VPS53-205ENST00000541903 ZNF518AQ6AHZ1 1483 aa10.85□□□□□ -0.67
VPS53-205ENST00000541903 TEX14Q8IWB6 1497 aa10.85□□□□□ -0.67
VPS53-205ENST00000541903 POGZQ7Z3K3 1410 aa10.84□□□□□ -0.67
VPS53-205ENST00000541903 ZFYVE16Q7Z3T8 1539 aa10.84□□□□□ -0.67
VPS53-205ENST00000541903 KDM6BO15054 1643 aa10.84□□□□□ -0.67
VPS53-205ENST00000541903 AFAP1Q8N556 730 aa10.84□□□□□ -0.67
VPS53-205ENST00000541903 DENND4BO75064 1496 aaPredicted RBP10.83□□□□□ -0.68
VPS53-205ENST00000541903 ATP7AQ04656 1500 aa10.83□□□□□ -0.68
VPS53-205ENST00000541903 DUOX2Q9NRD8 1548 aa10.83□□□□□ -0.68
VPS53-205ENST00000541903 INO80Q9ULG1 1556 aaPredicted RBP10.82□□□□□ -0.68
VPS53-205ENST00000541903 MYT1LQ9UL68 1186 aa10.82□□□□□ -0.68
VPS53-205ENST00000541903 ERBINQ96RT1 1412 aa10.82□□□□□ -0.68
VPS53-205ENST00000541903 KDM5CP41229 1560 aa10.81□□□□□ -0.68
VPS53-205ENST00000541903 MLH3Q9UHC1 1453 aa10.79□□□□□ -0.68
VPS53-205ENST00000541903 HECW2Q9P2P5 1572 aa10.78□□□□□ -0.68
VPS53-205ENST00000541903 MPHOSPH9Q99550 1183 aa10.78□□□□□ -0.68
VPS53-205ENST00000541903 PPRC1Q5VV67 1664 aaKnown RBP10.78□□□□□ -0.68
VPS53-205ENST00000541903 KDM5DQ9BY66 1539 aa10.78□□□□□ -0.68
VPS53-205ENST00000541903 SLC4A1APQ9BWU0 796 aaKnown RBP10.77□□□□□ -0.69
VPS53-205ENST00000541903 KIF13AQ9H1H9 1805 aa10.77□□□□□ -0.69
VPS53-205ENST00000541903 NUP155O75694 1391 aa10.77□□□□□ -0.69
VPS53-205ENST00000541903 PZPP20742 1482 aa10.76□□□□□ -0.69
VPS53-205ENST00000541903 UNC13BO14795 1591 aa10.76□□□□□ -0.69
VPS53-205ENST00000541903 TSPOAP1O95153 1857 aa10.75□□□□□ -0.69
VPS53-205ENST00000541903 RAPGEF3O95398 923 aa10.75□□□□□ -0.69
VPS53-205ENST00000541903 DHX29Q7Z478 1369 aaKnown RBP10.75□□□□□ -0.69
VPS53-205ENST00000541903 KIDINS220Q9ULH0 1771 aa10.75□□□□□ -0.69
VPS53-205ENST00000541903 A2MP01023 1474 aa10.74□□□□□ -0.69
VPS53-205ENST00000541903 ZMYM4Q5VZL5 1548 aa10.74□□□□□ -0.69
VPS53-205ENST00000541903 FRMPD1Q5SYB0 1578 aa10.74□□□□□ -0.69
VPS53-205ENST00000541903 RICTORQ6R327 1708 aa10.74□□□□□ -0.69
VPS53-205ENST00000541903 MAGI2Q86UL8 1455 aa10.74□□□□□ -0.69
VPS53-205ENST00000541903 EIF2AK4Q9P2K8 1649 aaKnown RBP10.73□□□□□ -0.69
VPS53-205ENST00000541903 FAM135AQ9P2D6 1515 aa10.73□□□□□ -0.69
VPS53-205ENST00000541903 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms