RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 WDR7Q9Y4E6 1490 aa14.5□□□□□ -0.09
DDX55-208ENST00000541259 SUPT6HQ7KZ85 1726 aaKnown RBP14.5□□□□□ -0.09
DDX55-208ENST00000541259 NCOA2Q15596 1464 aa14.47□□□□□ -0.09
DDX55-208ENST00000541259 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.46□□□□□ -0.1
DDX55-208ENST00000541259 TTC37Q6PGP7 1564 aa14.45□□□□□ -0.1
DDX55-208ENST00000541259 KIF13AQ9H1H9 1805 aa14.45□□□□□ -0.1
DDX55-208ENST00000541259 ABCC10Q5T3U5 1492 aa14.44□□□□□ -0.1
DDX55-208ENST00000541259 CDC42BPAQ5VT25 1732 aa14.44□□□□□ -0.1
DDX55-208ENST00000541259 MYCNP04198 464 aaPredicted RBP14.43□□□□□ -0.1
DDX55-208ENST00000541259 ABCA9Q8IUA7 1624 aa14.43□□□□□ -0.1
DDX55-208ENST00000541259 PHLDB1Q86UU1 1377 aa14.43□□□□□ -0.1
DDX55-208ENST00000541259 DIP2BQ9P265 1576 aa14.43□□□□□ -0.1
DDX55-208ENST00000541259 MYO5CQ9NQX4 1742 aa14.41□□□□□ -0.1
DDX55-208ENST00000541259 CDC42BPBQ9Y5S2 1711 aa14.41□□□□□ -0.1
DDX55-208ENST00000541259 TSPOAP1O95153 1857 aa14.4□□□□□ -0.1
DDX55-208ENST00000541259 GLI2P10070 1586 aa14.39□□□□□ -0.11
DDX55-208ENST00000541259 CCNB3Q8WWL7 1395 aa14.39□□□□□ -0.11
DDX55-208ENST00000541259 FAM69CQ0P6D2 419 aa14.39□□□□□ -0.11
DDX55-208ENST00000541259 GPATCH8Q9UKJ3 1502 aaKnown RBP14.39□□□□□ -0.11
DDX55-208ENST00000541259 ITSN2Q9NZM3 1697 aa14.38□□□□□ -0.11
DDX55-208ENST00000541259 PREX2Q70Z35 1606 aa14.37□□□□□ -0.11
DDX55-208ENST00000541259 MAP3K4Q9Y6R4 1608 aa14.37□□□□□ -0.11
DDX55-208ENST00000541259 MYOM3Q5VTT5 1437 aa14.37□□□□□ -0.11
DDX55-208ENST00000541259 PLCH2O75038 1416 aa14.34□□□□□ -0.11
DDX55-208ENST00000541259 CD109Q6YHK3 1445 aa14.34□□□□□ -0.11
DDX55-208ENST00000541259 PPRC1Q5VV67 1664 aaKnown RBP14.34□□□□□ -0.11
DDX55-208ENST00000541259 FGD6Q6ZV73 1430 aa14.33□□□□□ -0.11
DDX55-208ENST00000541259 CFDP1Q9UEE9 299 aaPredicted RBP14.33□□□□□ -0.12
DDX55-208ENST00000541259 PTPN23Q9H3S7 1636 aa14.33□□□□□ -0.12
DDX55-208ENST00000541259 ARHGAP5Q13017 1502 aa14.32□□□□□ -0.12
DDX55-208ENST00000541259 TRHP20396 242 aaPredicted RBP14.32□□□□□ -0.12
DDX55-208ENST00000541259 ZNF777Q9ULD5 760 aaPredicted RBP14.32□□□□□ -0.12
DDX55-208ENST00000541259 ZNF644Q9H582 1327 aaPredicted RBP14.32□□□□□ -0.12
DDX55-208ENST00000541259 MIA2Q96PC5 1412 aa14.31□□□□□ -0.12
DDX55-208ENST00000541259 RRBP1Q9P2E9 1410 aaKnown RBP14.31□□□□□ -0.12
DDX55-208ENST00000541259 SAMD9LQ8IVG5 1584 aa14.3□□□□□ -0.12
DDX55-208ENST00000541259 ARAP3Q8WWN8 1544 aa14.3□□□□□ -0.12
DDX55-208ENST00000541259 FAM50AQ14320 339 aaKnown RBP14.29□□□□□ -0.12
DDX55-208ENST00000541259 FANCAO15360 1455 aa14.28□□□□□ -0.12
DDX55-208ENST00000541259 CAMSAP2Q08AD1 1489 aa14.28□□□□□ -0.12
DDX55-208ENST00000541259 TCOF1Q13428 1488 aaKnown RBP14.28□□□□□ -0.12
DDX55-208ENST00000541259 EFCAB2Q5VUJ9 269 aa14.28□□□□□ -0.12
DDX55-208ENST00000541259 TRIM26Q12899 539 aaPredicted RBP14.25□□□□□ -0.13
DDX55-208ENST00000541259 U3KPZ7 1027 aaPredicted RBP14.25□□□□□ -0.13
DDX55-208ENST00000541259 CFAP74Q9C0B2 1584 aa14.25□□□□□ -0.13
DDX55-208ENST00000541259 AKNAQ7Z591 1439 aa14.24□□□□□ -0.13
DDX55-208ENST00000541259 HNRNPMP52272 730 aaKnown RBP eCLIP14.24□□□□□ -0.13
DDX55-208ENST00000541259 ARHGEF12Q9NZN5 1544 aa14.24□□□□□ -0.13
DDX55-208ENST00000541259 ABCC1P33527 1531 aa14.23□□□□□ -0.13
DDX55-208ENST00000541259 SYCP2Q9BX26 1530 aa14.23□□□□□ -0.13
DDX55-208ENST00000541259 ITGAEP38570 1179 aa14.22□□□□□ -0.13
DDX55-208ENST00000541259 NEO1Q92859 1461 aa14.22□□□□□ -0.13
DDX55-208ENST00000541259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.22□□□□□ -0.13
DDX55-208ENST00000541259 ADGRL1O94910 1474 aa14.21□□□□□ -0.13
DDX55-208ENST00000541259 TEX14Q8IWB6 1497 aa14.21□□□□□ -0.13
DDX55-208ENST00000541259 MBD5Q9P267 1494 aa14.21□□□□□ -0.13
DDX55-208ENST00000541259 DNMT1P26358 1616 aaKnown RBP14.21□□□□□ -0.13
DDX55-208ENST00000541259 SCAPERQ9BY12 1400 aa14.2□□□□□ -0.14
DDX55-208ENST00000541259 CROCC2H7BZ55 1655 aa14.2□□□□□ -0.14
DDX55-208ENST00000541259 PLEKHH2Q8IVE3 1493 aa14.19□□□□□ -0.14
DDX55-208ENST00000541259 ARHGEF5Q12774 1597 aa14.19□□□□□ -0.14
DDX55-208ENST00000541259 PTPRKQ15262 1439 aa14.19□□□□□ -0.14
DDX55-208ENST00000541259 KIAA1107Q9UPP5 1409 aa14.19□□□□□ -0.14
DDX55-208ENST00000541259 TRAPPC8Q9Y2L5 1435 aa14.19□□□□□ -0.14
DDX55-208ENST00000541259 SAMD1Q6SPF0 538 aaPredicted RBP14.19□□□□□ -0.14
DDX55-208ENST00000541259 ABCC5O15440 1437 aa14.18□□□□□ -0.14
DDX55-208ENST00000541259 DAPK1P53355 1430 aa14.18□□□□□ -0.14
DDX55-208ENST00000541259 ATXN8OSP0DMR3 200 aa14.18□□□□□ -0.14
DDX55-208ENST00000541259 PCGF6Q9BYE7 350 aa14.17□□□□□ -0.14
DDX55-208ENST00000541259 RICTORQ6R327 1708 aa14.17□□□□□ -0.14
DDX55-208ENST00000541259 AFAP1Q8N556 730 aa14.16□□□□□ -0.14
DDX55-208ENST00000541259 CHIC2Q9UKJ5 165 aa14.16□□□□□ -0.14
DDX55-208ENST00000541259 CCDC141Q6ZP82 1450 aa14.15□□□□□ -0.14
DDX55-208ENST00000541259 COL17A1Q9UMD9 1497 aaPredicted RBP14.15□□□□□ -0.14
DDX55-208ENST00000541259 RAPGEF3O95398 923 aa14.15□□□□□ -0.14
DDX55-208ENST00000541259 DENND4BO75064 1496 aaPredicted RBP14.14□□□□□ -0.15
DDX55-208ENST00000541259 FRMPD1Q5SYB0 1578 aa14.13□□□□□ -0.15
DDX55-208ENST00000541259 RSPH4AQ5TD94 716 aa14.13□□□□□ -0.15
DDX55-208ENST00000541259 POGZQ7Z3K3 1410 aa14.13□□□□□ -0.15
DDX55-208ENST00000541259 ADGBQ8N7X0 1667 aa14.13□□□□□ -0.15
DDX55-208ENST00000541259 TSPY4P0CV99 314 aa14.11□□□□□ -0.15
DDX55-208ENST00000541259 TSPY10P0CW01 314 aa14.11□□□□□ -0.15
DDX55-208ENST00000541259 KDM5CP41229 1560 aa14.11□□□□□ -0.15
DDX55-208ENST00000541259 C9orf84Q5VXU9 1444 aa14.11□□□□□ -0.15
DDX55-208ENST00000541259 MAST1Q9Y2H9 1570 aa14.11□□□□□ -0.15
DDX55-208ENST00000541259 ZNF518AQ6AHZ1 1483 aa14.11□□□□□ -0.15
DDX55-208ENST00000541259 KIDINS220Q9ULH0 1771 aa14.1□□□□□ -0.15
DDX55-208ENST00000541259 SHANK2Q9UPX8 1470 aa14.1□□□□□ -0.15
DDX55-208ENST00000541259 INO80Q9ULG1 1556 aaPredicted RBP14.09□□□□□ -0.15
DDX55-208ENST00000541259 KDM6BO15054 1643 aa14.09□□□□□ -0.15
DDX55-208ENST00000541259 RRP7BPQ9NSQ0 103 aa14.09□□□□□ -0.15
DDX55-208ENST00000541259 SPAG9O60271 1321 aaKnown RBP14.09□□□□□ -0.15
DDX55-208ENST00000541259 ZFYVE16Q7Z3T8 1539 aa14.08□□□□□ -0.16
DDX55-208ENST00000541259 ADGRL2O95490 1459 aa14.07□□□□□ -0.16
DDX55-208ENST00000541259 ATP7AQ04656 1500 aa14.07□□□□□ -0.16
DDX55-208ENST00000541259 MYT1LQ9UL68 1186 aa14.07□□□□□ -0.16
DDX55-208ENST00000541259 HECW2Q9P2P5 1572 aa14.07□□□□□ -0.16
DDX55-208ENST00000541259 NCOA1Q15788 1441 aa14.07□□□□□ -0.16
DDX55-208ENST00000541259 RNF39Q9H2S5 420 aa14.06□□□□□ -0.16
DDX55-208ENST00000541259 RTEL1-TNFRSF6BF6WH68 1400 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms