RNA–Protein interactions for RNA: ENST00000540699.1

ATL3-204, Transcript of atlastin GTPase 3, humanhuman

TSL 3

Gene ATL3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-204ENST00000540699 SUPT6HQ7KZ85 1726 aaKnown RBP16.61■□□□□ 0.25
ATL3-204ENST00000540699 NEO1Q92859 1461 aa16.61■□□□□ 0.25
ATL3-204ENST00000540699 PHLDB1Q86UU1 1377 aa16.59■□□□□ 0.25
ATL3-204ENST00000540699 FRMPD1Q5SYB0 1578 aa16.59■□□□□ 0.25
ATL3-204ENST00000540699 FANCAO15360 1455 aa16.56■□□□□ 0.24
ATL3-204ENST00000540699 ITSN2Q9NZM3 1697 aa16.56■□□□□ 0.24
ATL3-204ENST00000540699 GPATCH8Q9UKJ3 1502 aaKnown RBP16.55■□□□□ 0.24
ATL3-204ENST00000540699 NCOA2Q15596 1464 aa16.54■□□□□ 0.24
ATL3-204ENST00000540699 ADAMTSL3P82987 1691 aa16.53■□□□□ 0.24
ATL3-204ENST00000540699 KANK4Q5T7N3 995 aaPredicted RBP16.53■□□□□ 0.24
ATL3-204ENST00000540699 ARHGAP5Q13017 1502 aa16.53■□□□□ 0.24
ATL3-204ENST00000540699 RICTORQ6R327 1708 aa16.53■□□□□ 0.24
ATL3-204ENST00000540699 AKNAQ7Z591 1439 aa16.53■□□□□ 0.24
ATL3-204ENST00000540699 RAPGEF3O95398 923 aa16.51■□□□□ 0.23
ATL3-204ENST00000540699 APLP2Q06481 763 aa16.51■□□□□ 0.23
ATL3-204ENST00000540699 EFCAB2Q5VUJ9 269 aa16.5■□□□□ 0.23
ATL3-204ENST00000540699 BCORL1Q5H9F3 1711 aa16.5■□□□□ 0.23
ATL3-204ENST00000540699 CCNB3Q8WWL7 1395 aa16.5■□□□□ 0.23
ATL3-204ENST00000540699 ARHGEF40Q8TER5 1519 aa16.5■□□□□ 0.23
ATL3-204ENST00000540699 SAMD9LQ8IVG5 1584 aa16.48■□□□□ 0.23
ATL3-204ENST00000540699 ABCC1P33527 1531 aa16.48■□□□□ 0.23
ATL3-204ENST00000540699 DENND4BO75064 1496 aaPredicted RBP16.46■□□□□ 0.23
ATL3-204ENST00000540699 MADDQ8WXG6 1647 aa16.45■□□□□ 0.22
ATL3-204ENST00000540699 PTPRMP28827 1452 aa16.45■□□□□ 0.22
ATL3-204ENST00000540699 ZMYM4Q5VZL5 1548 aa16.45■□□□□ 0.22
ATL3-204ENST00000540699 FBXO41Q8TF61 875 aa16.44■□□□□ 0.22
ATL3-204ENST00000540699 POGZQ7Z3K3 1410 aa16.44■□□□□ 0.22
ATL3-204ENST00000540699 SCAPERQ9BY12 1400 aa16.44■□□□□ 0.22
ATL3-204ENST00000540699 ARHGEF12Q9NZN5 1544 aa16.43■□□□□ 0.22
ATL3-204ENST00000540699 MYOM3Q5VTT5 1437 aa16.43■□□□□ 0.22
ATL3-204ENST00000540699 PLEKHH2Q8IVE3 1493 aa16.42■□□□□ 0.22
ATL3-204ENST00000540699 CFDP1Q9UEE9 299 aaPredicted RBP16.42■□□□□ 0.22
ATL3-204ENST00000540699 KIAA1107Q9UPP5 1409 aa16.42■□□□□ 0.22
ATL3-204ENST00000540699 KDM5CP41229 1560 aa16.42■□□□□ 0.22
ATL3-204ENST00000540699 MIA2Q96PC5 1412 aa16.41■□□□□ 0.22
ATL3-204ENST00000540699 SIGLEC1Q9BZZ2 1709 aa16.41■□□□□ 0.22
ATL3-204ENST00000540699 ZNF518AQ6AHZ1 1483 aa16.4■□□□□ 0.22
ATL3-204ENST00000540699 RIMS1Q86UR5 1692 aaKnown RBP16.4■□□□□ 0.22
ATL3-204ENST00000540699 SYCP2Q9BX26 1530 aa16.4■□□□□ 0.22
ATL3-204ENST00000540699 ZFYVE16Q7Z3T8 1539 aa16.39■□□□□ 0.21
ATL3-204ENST00000540699 CAMSAP2Q08AD1 1489 aa16.38■□□□□ 0.21
ATL3-204ENST00000540699 MAGI2Q86UL8 1455 aa16.37■□□□□ 0.21
ATL3-204ENST00000540699 MBD5Q9P267 1494 aa16.37■□□□□ 0.21
ATL3-204ENST00000540699 ARID4BQ4LE39 1312 aaPredicted RBP16.37■□□□□ 0.21
ATL3-204ENST00000540699 TRAPPC8Q9Y2L5 1435 aa16.36■□□□□ 0.21
ATL3-204ENST00000540699 ARHGEF5Q12774 1597 aa16.36■□□□□ 0.21
ATL3-204ENST00000540699 FGD6Q6ZV73 1430 aa16.36■□□□□ 0.21
ATL3-204ENST00000540699 YEATS2Q9ULM3 1422 aa16.36■□□□□ 0.21
ATL3-204ENST00000540699 PTPN23Q9H3S7 1636 aa16.35■□□□□ 0.21
ATL3-204ENST00000540699 ZNF777Q9ULD5 760 aaPredicted RBP16.35■□□□□ 0.21
ATL3-204ENST00000540699 ZNF644Q9H582 1327 aaPredicted RBP16.35■□□□□ 0.21
ATL3-204ENST00000540699 TCOF1Q13428 1488 aaKnown RBP16.35■□□□□ 0.21
ATL3-204ENST00000540699 MLH3Q9UHC1 1453 aa16.35■□□□□ 0.21
ATL3-204ENST00000540699 KIDINS220Q9ULH0 1771 aa16.33■□□□□ 0.21
ATL3-204ENST00000540699 FER1L4A9Z1Z3 1794 aa16.33■□□□□ 0.2
ATL3-204ENST00000540699 PPARGC1BQ86YN6 1023 aaKnown RBP16.32■□□□□ 0.2
ATL3-204ENST00000540699 INO80Q9ULG1 1556 aaPredicted RBP16.32■□□□□ 0.2
ATL3-204ENST00000540699 LMTK3Q96Q04 1460 aa16.31■□□□□ 0.2
ATL3-204ENST00000540699 HNRNPMP52272 730 aaKnown RBP eCLIP16.31■□□□□ 0.2
ATL3-204ENST00000540699 AFAP1Q8N556 730 aa16.31■□□□□ 0.2
ATL3-204ENST00000540699 CCDC141Q6ZP82 1450 aa16.3■□□□□ 0.2
ATL3-204ENST00000540699 TRIM26Q12899 539 aaPredicted RBP16.3■□□□□ 0.2
ATL3-204ENST00000540699 ABCA6Q8N139 1617 aa16.29■□□□□ 0.2
ATL3-204ENST00000540699 DIP2CQ9Y2E4 1556 aa16.29■□□□□ 0.2
ATL3-204ENST00000540699 CROCC2H7BZ55 1655 aa16.28■□□□□ 0.2
ATL3-204ENST00000540699 RSPH4AQ5TD94 716 aa16.28■□□□□ 0.2
ATL3-204ENST00000540699 REREQ9P2R6 1566 aa16.28■□□□□ 0.2
ATL3-204ENST00000540699 MAST1Q9Y2H9 1570 aa16.28■□□□□ 0.2
ATL3-204ENST00000540699 ATP7AQ04656 1500 aa16.28■□□□□ 0.2
ATL3-204ENST00000540699 DNMT1P26358 1616 aaKnown RBP16.27■□□□□ 0.2
ATL3-204ENST00000540699 RTEL1-TNFRSF6BF6WH68 1400 aa16.26■□□□□ 0.19
ATL3-204ENST00000540699 C9orf84Q5VXU9 1444 aa16.26■□□□□ 0.19
ATL3-204ENST00000540699 ATP10AO60312 1499 aa16.25■□□□□ 0.19
ATL3-204ENST00000540699 ADGBQ8N7X0 1667 aa16.24■□□□□ 0.19
ATL3-204ENST00000540699 SPAG9O60271 1321 aaKnown RBP16.24■□□□□ 0.19
ATL3-204ENST00000540699 SHANK2Q9UPX8 1470 aa16.23■□□□□ 0.19
ATL3-204ENST00000540699 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.23■□□□□ 0.19
ATL3-204ENST00000540699 ABCC5O15440 1437 aa16.22■□□□□ 0.19
ATL3-204ENST00000540699 RRBP1Q9P2E9 1410 aaKnown RBP16.22■□□□□ 0.19
ATL3-204ENST00000540699 PCGF6Q9BYE7 350 aa16.22■□□□□ 0.19
ATL3-204ENST00000540699 PLXNC1O60486 1568 aa16.21■□□□□ 0.19
ATL3-204ENST00000540699 DAPK1P53355 1430 aa16.21■□□□□ 0.19
ATL3-204ENST00000540699 AGLP35573 1532 aa16.2■□□□□ 0.18
ATL3-204ENST00000540699 SOCS7O14512 581 aa16.2■□□□□ 0.18
ATL3-204ENST00000540699 MLECQ14165 292 aa16.2■□□□□ 0.18
ATL3-204ENST00000540699 PREX1Q8TCU6 1659 aa16.19■□□□□ 0.18
ATL3-204ENST00000540699 TSPY4P0CV99 314 aa16.17■□□□□ 0.18
ATL3-204ENST00000540699 TSPY10P0CW01 314 aa16.17■□□□□ 0.18
ATL3-204ENST00000540699 PLPPR3Q6T4P5 718 aa16.17■□□□□ 0.18
ATL3-204ENST00000540699 ILDR2Q71H61 639 aa16.17■□□□□ 0.18
ATL3-204ENST00000540699 A2MP01023 1474 aa16.16■□□□□ 0.18
ATL3-204ENST00000540699 ADGRL2O95490 1459 aa16.16■□□□□ 0.18
ATL3-204ENST00000540699 HSPA2P54652 639 aa16.15■□□□□ 0.18
ATL3-204ENST00000540699 FAM50AQ14320 339 aaKnown RBP16.14■□□□□ 0.17
ATL3-204ENST00000540699 MYT1LQ9UL68 1186 aa16.14■□□□□ 0.17
ATL3-204ENST00000540699 PTPRKQ15262 1439 aa16.12■□□□□ 0.17
ATL3-204ENST00000540699 CERKQ8TCT0 537 aa16.12■□□□□ 0.17
ATL3-204ENST00000540699 SETD1BQ9UPS6 1966 aaKnown RBP16.12■□□□□ 0.17
ATL3-204ENST00000540699 DHX29Q7Z478 1369 aaKnown RBP16.12■□□□□ 0.17
ATL3-204ENST00000540699 EIF2AK4Q9P2K8 1649 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms