RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 APLP2Q06481 763 aa16.48■□□□□ 0.23
VPS33A-204ENST00000540669 MIA2Q96PC5 1412 aa16.47■□□□□ 0.23
VPS33A-204ENST00000540669 PLCH2O75038 1416 aa16.46■□□□□ 0.23
VPS33A-204ENST00000540669 FGD6Q6ZV73 1430 aa16.46■□□□□ 0.23
VPS33A-204ENST00000540669 SAMD9LQ8IVG5 1584 aa16.46■□□□□ 0.23
VPS33A-204ENST00000540669 CFAP74Q9C0B2 1584 aa16.46■□□□□ 0.23
VPS33A-204ENST00000540669 PTPN23Q9H3S7 1636 aa16.44■□□□□ 0.22
VPS33A-204ENST00000540669 ABCC1P33527 1531 aa16.44■□□□□ 0.22
VPS33A-204ENST00000540669 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.43■□□□□ 0.22
VPS33A-204ENST00000540669 HNRNPUL2Q1KMD3 747 aaKnown RBP16.43■□□□□ 0.22
VPS33A-204ENST00000540669 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.42■□□□□ 0.22
VPS33A-204ENST00000540669 CCNB3Q8WWL7 1395 aa16.41■□□□□ 0.22
VPS33A-204ENST00000540669 NEO1Q92859 1461 aa16.41■□□□□ 0.22
VPS33A-204ENST00000540669 ARHGEF5Q12774 1597 aa16.4■□□□□ 0.22
VPS33A-204ENST00000540669 CD109Q6YHK3 1445 aa16.4■□□□□ 0.22
VPS33A-204ENST00000540669 CAMSAP2Q08AD1 1489 aa16.4■□□□□ 0.22
VPS33A-204ENST00000540669 CROCC2H7BZ55 1655 aa16.4■□□□□ 0.22
VPS33A-204ENST00000540669 TSPOAP1O95153 1857 aa16.39■□□□□ 0.22
VPS33A-204ENST00000540669 ARHGAP5Q13017 1502 aa16.39■□□□□ 0.21
VPS33A-204ENST00000540669 DNMT1P26358 1616 aaKnown RBP16.38■□□□□ 0.21
VPS33A-204ENST00000540669 FANCAO15360 1455 aa16.38■□□□□ 0.21
VPS33A-204ENST00000540669 KIAA1107Q9UPP5 1409 aa16.36■□□□□ 0.21
VPS33A-204ENST00000540669 MBD5Q9P267 1494 aa16.36■□□□□ 0.21
VPS33A-204ENST00000540669 PIAS4Q8N2W9 510 aaPredicted RBP16.36■□□□□ 0.21
VPS33A-204ENST00000540669 PLEKHH2Q8IVE3 1493 aa16.35■□□□□ 0.21
VPS33A-204ENST00000540669 ARHGEF12Q9NZN5 1544 aa16.35■□□□□ 0.21
VPS33A-204ENST00000540669 FRMPD1Q5SYB0 1578 aa16.35■□□□□ 0.21
VPS33A-204ENST00000540669 TEX14Q8IWB6 1497 aa16.35■□□□□ 0.21
VPS33A-204ENST00000540669 SYCP2Q9BX26 1530 aa16.35■□□□□ 0.21
VPS33A-204ENST00000540669 KDM5CP41229 1560 aa16.34■□□□□ 0.21
VPS33A-204ENST00000540669 RICTORQ6R327 1708 aa16.34■□□□□ 0.21
VPS33A-204ENST00000540669 PPARGC1BQ86YN6 1023 aaKnown RBP16.33■□□□□ 0.2
VPS33A-204ENST00000540669 KCNH8Q96L42 1107 aa16.33■□□□□ 0.2
VPS33A-204ENST00000540669 SHANK2Q9UPX8 1470 aa16.33■□□□□ 0.2
VPS33A-204ENST00000540669 MAST1Q9Y2H9 1570 aa16.33■□□□□ 0.2
VPS33A-204ENST00000540669 ZMYM4Q5VZL5 1548 aa16.31■□□□□ 0.2
VPS33A-204ENST00000540669 FAM69CQ0P6D2 419 aa16.31■□□□□ 0.2
VPS33A-204ENST00000540669 INO80Q9ULG1 1556 aaPredicted RBP16.3■□□□□ 0.2
VPS33A-204ENST00000540669 AKNAQ7Z591 1439 aa16.3■□□□□ 0.2
VPS33A-204ENST00000540669 ADGRL1O94910 1474 aa16.29■□□□□ 0.2
VPS33A-204ENST00000540669 POGZQ7Z3K3 1410 aa16.28■□□□□ 0.2
VPS33A-204ENST00000540669 CCDC141Q6ZP82 1450 aa16.28■□□□□ 0.2
VPS33A-204ENST00000540669 ADGBQ8N7X0 1667 aa16.27■□□□□ 0.2
VPS33A-204ENST00000540669 CFDP1Q9UEE9 299 aaPredicted RBP16.27■□□□□ 0.2
VPS33A-204ENST00000540669 ZFYVE16Q7Z3T8 1539 aa16.27■□□□□ 0.2
VPS33A-204ENST00000540669 ADGRL2O95490 1459 aa16.27■□□□□ 0.19
VPS33A-204ENST00000540669 PLXNC1O60486 1568 aa16.26■□□□□ 0.19
VPS33A-204ENST00000540669 EFCAB2Q5VUJ9 269 aa16.26■□□□□ 0.19
VPS33A-204ENST00000540669 ABCC5O15440 1437 aa16.26■□□□□ 0.19
VPS33A-204ENST00000540669 DAPK1P53355 1430 aa16.26■□□□□ 0.19
VPS33A-204ENST00000540669 ZNF644Q9H582 1327 aaPredicted RBP16.25■□□□□ 0.19
VPS33A-204ENST00000540669 PTPRKQ15262 1439 aa16.25■□□□□ 0.19
VPS33A-204ENST00000540669 ZNF518AQ6AHZ1 1483 aa16.24■□□□□ 0.19
VPS33A-204ENST00000540669 COL17A1Q9UMD9 1497 aaPredicted RBP16.24■□□□□ 0.19
VPS33A-204ENST00000540669 TRAPPC8Q9Y2L5 1435 aa16.24■□□□□ 0.19
VPS33A-204ENST00000540669 KIDINS220Q9ULH0 1771 aa16.23■□□□□ 0.19
VPS33A-204ENST00000540669 HECW2Q9P2P5 1572 aa16.22■□□□□ 0.19
VPS33A-204ENST00000540669 KDM6BO15054 1643 aa16.22■□□□□ 0.19
VPS33A-204ENST00000540669 DENND4BO75064 1496 aaPredicted RBP16.22■□□□□ 0.19
VPS33A-204ENST00000540669 GCC2Q8IWJ2 1684 aa16.21■□□□□ 0.19
VPS33A-204ENST00000540669 SCAPERQ9BY12 1400 aa16.21■□□□□ 0.19
VPS33A-204ENST00000540669 MLH3Q9UHC1 1453 aa16.21■□□□□ 0.19
VPS33A-204ENST00000540669 ATP7AQ04656 1500 aa16.19■□□□□ 0.18
VPS33A-204ENST00000540669 ABCA6Q8N139 1617 aa16.19■□□□□ 0.18
VPS33A-204ENST00000540669 RTEL1-TNFRSF6BF6WH68 1400 aa16.19■□□□□ 0.18
VPS33A-204ENST00000540669 ARHGEF40Q8TER5 1519 aa16.18■□□□□ 0.18
VPS33A-204ENST00000540669 C9orf84Q5VXU9 1444 aa16.18■□□□□ 0.18
VPS33A-204ENST00000540669 REREQ9P2R6 1566 aa16.17■□□□□ 0.18
VPS33A-204ENST00000540669 ROCK1Q13464 1354 aa16.17■□□□□ 0.18
VPS33A-204ENST00000540669 DIP2CQ9Y2E4 1556 aa16.17■□□□□ 0.18
VPS33A-204ENST00000540669 BCORL1Q5H9F3 1711 aa16.16■□□□□ 0.18
VPS33A-204ENST00000540669 MAGI2Q86UL8 1455 aa16.16■□□□□ 0.18
VPS33A-204ENST00000540669 TRIM26Q12899 539 aaPredicted RBP16.14■□□□□ 0.17
VPS33A-204ENST00000540669 RSPH4AQ5TD94 716 aa16.14■□□□□ 0.17
VPS33A-204ENST00000540669 HFM1A2PYH4 1435 aa16.13■□□□□ 0.17
VPS33A-204ENST00000540669 NCOA1Q15788 1441 aa16.13■□□□□ 0.17
VPS33A-204ENST00000540669 HNRNPMP52272 730 aaKnown RBP eCLIP16.11■□□□□ 0.17
VPS33A-204ENST00000540669 ZNF777Q9ULD5 760 aaPredicted RBP16.11■□□□□ 0.17
VPS33A-204ENST00000540669 EIF2AK4Q9P2K8 1649 aaKnown RBP16.11■□□□□ 0.17
VPS33A-204ENST00000540669 NAIPQ13075 1403 aa16.11■□□□□ 0.17
VPS33A-204ENST00000540669 MSH5O43196 834 aa16.1■□□□□ 0.17
VPS33A-204ENST00000540669 FAM50AQ14320 339 aaKnown RBP16.1■□□□□ 0.17
VPS33A-204ENST00000540669 SIGLEC1Q9BZZ2 1709 aa16.1■□□□□ 0.17
VPS33A-204ENST00000540669 DEPDC5O75140 1603 aa16.09■□□□□ 0.17
VPS33A-204ENST00000540669 DUOX2Q9NRD8 1548 aa16.09■□□□□ 0.17
VPS33A-204ENST00000540669 YEATS2Q9ULM3 1422 aa16.08■□□□□ 0.16
VPS33A-204ENST00000540669 AFAP1Q8N556 730 aa16.07■□□□□ 0.16
VPS33A-204ENST00000540669 RNF17Q9BXT8 1623 aaKnown RBP16.07■□□□□ 0.16
VPS33A-204ENST00000540669 MROH1Q8NDA8 1641 aa16.06■□□□□ 0.16
VPS33A-204ENST00000540669 UNC13BO14795 1591 aa16.06■□□□□ 0.16
VPS33A-204ENST00000540669 AGLP35573 1532 aa16.05■□□□□ 0.16
VPS33A-204ENST00000540669 ERBINQ96RT1 1412 aa16.05■□□□□ 0.16
VPS33A-204ENST00000540669 ANKRD30AQ9BXX3 1397 aa16.04■□□□□ 0.16
VPS33A-204ENST00000540669 KIF15Q9NS87 1388 aa16.04■□□□□ 0.16
VPS33A-204ENST00000540669 SPAG9O60271 1321 aaKnown RBP16.04■□□□□ 0.16
VPS33A-204ENST00000540669 RAPGEF3O95398 923 aa16.04■□□□□ 0.16
VPS33A-204ENST00000540669 KDM5DQ9BY66 1539 aa16.03■□□□□ 0.16
VPS33A-204ENST00000540669 PRDM15P57071 1507 aaPredicted RBP16.02■□□□□ 0.15
VPS33A-204ENST00000540669 A2MP01023 1474 aa16.02■□□□□ 0.15
VPS33A-204ENST00000540669 VWDEQ8N2E2 1590 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms