RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 CFDP1Q9UEE9 299 aaPredicted RBP25.11■■□□□ 1.61
COPS3-212ENST00000539941 PTPRKQ15262 1439 aa25.1■■□□□ 1.61
COPS3-212ENST00000539941 RAB3GAP2Q9H2M9 1393 aa25.09■■□□□ 1.61
COPS3-212ENST00000539941 DNMT1P26358 1616 aaKnown RBP25.08■■□□□ 1.61
COPS3-212ENST00000539941 HFM1A2PYH4 1435 aa25.08■■□□□ 1.6
COPS3-212ENST00000539941 CAMSAP2Q08AD1 1489 aa25.08■■□□□ 1.6
COPS3-212ENST00000539941 AKNAQ7Z591 1439 aa25.07■■□□□ 1.6
COPS3-212ENST00000539941 PREX2Q70Z35 1606 aa25.05■■□□□ 1.6
COPS3-212ENST00000539941 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.04■■□□□ 1.6
COPS3-212ENST00000539941 DIP2BQ9P265 1576 aa25.04■■□□□ 1.6
COPS3-212ENST00000539941 DAPK1P53355 1430 aa25.04■■□□□ 1.6
COPS3-212ENST00000539941 CLSPNQ9HAW4 1339 aa25.04■■□□□ 1.6
COPS3-212ENST00000539941 DHX57Q6P158 1386 aaKnown RBP25.02■■□□□ 1.6
COPS3-212ENST00000539941 TTC37Q6PGP7 1564 aa25.02■■□□□ 1.6
COPS3-212ENST00000539941 WDR7Q9Y4E6 1490 aa25■■□□□ 1.59
COPS3-212ENST00000539941 ABCC5O15440 1437 aa25■■□□□ 1.59
COPS3-212ENST00000539941 ASXL2Q76L83 1435 aa25■■□□□ 1.59
COPS3-212ENST00000539941 ZNF644Q9H582 1327 aaPredicted RBP25■■□□□ 1.59
COPS3-212ENST00000539941 CDC42BPBQ9Y5S2 1711 aa24.99■■□□□ 1.59
COPS3-212ENST00000539941 NAIPQ13075 1403 aa24.99■■□□□ 1.59
COPS3-212ENST00000539941 ROCK1Q13464 1354 aa24.99■■□□□ 1.59
COPS3-212ENST00000539941 MYO5CQ9NQX4 1742 aa24.99■■□□□ 1.59
COPS3-212ENST00000539941 GCC2Q8IWJ2 1684 aa24.98■■□□□ 1.59
COPS3-212ENST00000539941 CROCC2H7BZ55 1655 aa24.95■■□□□ 1.58
COPS3-212ENST00000539941 ZNF777Q9ULD5 760 aaPredicted RBP24.94■■□□□ 1.58
COPS3-212ENST00000539941 ARHGEF5Q12774 1597 aa24.93■■□□□ 1.58
COPS3-212ENST00000539941 KCNH8Q96L42 1107 aa24.92■■□□□ 1.58
COPS3-212ENST00000539941 SHANK2Q9UPX8 1470 aa24.92■■□□□ 1.58
COPS3-212ENST00000539941 ARHGAP5Q13017 1502 aa24.92■■□□□ 1.58
COPS3-212ENST00000539941 ARAP3Q8WWN8 1544 aa24.92■■□□□ 1.58
COPS3-212ENST00000539941 SAMD9LQ8IVG5 1584 aa24.91■■□□□ 1.58
COPS3-212ENST00000539941 ADGBQ8N7X0 1667 aa24.91■■□□□ 1.58
COPS3-212ENST00000539941 PLCH2O75038 1416 aa24.91■■□□□ 1.58
COPS3-212ENST00000539941 PLEKHH2Q8IVE3 1493 aa24.9■■□□□ 1.58
COPS3-212ENST00000539941 ACIN1Q9UKV3 1341 aaKnown RBP24.9■■□□□ 1.58
COPS3-212ENST00000539941 ADGRL2O95490 1459 aa24.89■■□□□ 1.58
COPS3-212ENST00000539941 CHIC2Q9UKJ5 165 aa24.89■■□□□ 1.58
COPS3-212ENST00000539941 ABCA9Q8IUA7 1624 aa24.87■■□□□ 1.57
COPS3-212ENST00000539941 RSPH4AQ5TD94 716 aa24.87■■□□□ 1.57
COPS3-212ENST00000539941 MBD5Q9P267 1494 aa24.86■■□□□ 1.57
COPS3-212ENST00000539941 GLI2P10070 1586 aa24.86■■□□□ 1.57
COPS3-212ENST00000539941 RRP7BPQ9NSQ0 103 aa24.85■■□□□ 1.57
COPS3-212ENST00000539941 KIAA1107Q9UPP5 1409 aa24.85■■□□□ 1.57
COPS3-212ENST00000539941 TSPOAP1O95153 1857 aa24.83■■□□□ 1.57
COPS3-212ENST00000539941 CCDC141Q6ZP82 1450 aa24.83■■□□□ 1.56
COPS3-212ENST00000539941 NCOA1Q15788 1441 aa24.82■■□□□ 1.56
COPS3-212ENST00000539941 EFCAB2Q5VUJ9 269 aa24.81■■□□□ 1.56
COPS3-212ENST00000539941 ANKRD30AQ9BXX3 1397 aa24.81■■□□□ 1.56
COPS3-212ENST00000539941 C9orf84Q5VXU9 1444 aa24.8■■□□□ 1.56
COPS3-212ENST00000539941 SYCP2Q9BX26 1530 aa24.79■■□□□ 1.56
COPS3-212ENST00000539941 TSPY4P0CV99 314 aa24.78■■□□□ 1.56
COPS3-212ENST00000539941 TSPY10P0CW01 314 aa24.78■■□□□ 1.56
COPS3-212ENST00000539941 MAST1Q9Y2H9 1570 aa24.77■■□□□ 1.56
COPS3-212ENST00000539941 HNRNPMP52272 730 aaKnown RBP eCLIP24.76■■□□□ 1.55
COPS3-212ENST00000539941 ABCC1P33527 1531 aa24.75■■□□□ 1.55
COPS3-212ENST00000539941 KDM6BO15054 1643 aa24.74■■□□□ 1.55
COPS3-212ENST00000539941 PPRC1Q5VV67 1664 aaKnown RBP24.74■■□□□ 1.55
COPS3-212ENST00000539941 MAP3K4Q9Y6R4 1608 aa24.7■■□□□ 1.54
COPS3-212ENST00000539941 FANCAO15360 1455 aa24.69■■□□□ 1.54
COPS3-212ENST00000539941 ARHGEF12Q9NZN5 1544 aa24.69■■□□□ 1.54
COPS3-212ENST00000539941 ANKRD50Q9ULJ7 1429 aa24.66■■□□□ 1.54
COPS3-212ENST00000539941 COL17A1Q9UMD9 1497 aaPredicted RBP24.66■■□□□ 1.54
COPS3-212ENST00000539941 PLXNC1O60486 1568 aa24.65■■□□□ 1.54
COPS3-212ENST00000539941 CFAP74Q9C0B2 1584 aa24.65■■□□□ 1.54
COPS3-212ENST00000539941 KIF15Q9NS87 1388 aa24.65■■□□□ 1.54
COPS3-212ENST00000539941 AEBP2Q6ZN18 517 aaPredicted RBP24.64■■□□□ 1.53
COPS3-212ENST00000539941 CD109Q6YHK3 1445 aa24.63■■□□□ 1.53
COPS3-212ENST00000539941 TRIM52Q96A61 297 aa24.62■■□□□ 1.53
COPS3-212ENST00000539941 TEX14Q8IWB6 1497 aa24.61■■□□□ 1.53
COPS3-212ENST00000539941 TRAPPC8Q9Y2L5 1435 aa24.6■■□□□ 1.53
COPS3-212ENST00000539941 ADGRL1O94910 1474 aa24.59■■□□□ 1.53
COPS3-212ENST00000539941 RTEL1-TNFRSF6BF6WH68 1400 aa24.59■■□□□ 1.53
COPS3-212ENST00000539941 MPHOSPH9Q99550 1183 aa24.56■■□□□ 1.52
COPS3-212ENST00000539941 TIMELESSQ9UNS1 1208 aa24.56■■□□□ 1.52
COPS3-212ENST00000539941 DENND4BO75064 1496 aaPredicted RBP24.56■■□□□ 1.52
COPS3-212ENST00000539941 DUOX2Q9NRD8 1548 aa24.55■■□□□ 1.52
COPS3-212ENST00000539941 KDM5DQ9BY66 1539 aa24.54■■□□□ 1.52
COPS3-212ENST00000539941 SCAPERQ9BY12 1400 aa24.54■■□□□ 1.52
COPS3-212ENST00000539941 NEO1Q92859 1461 aa24.53■■□□□ 1.52
COPS3-212ENST00000539941 ZFYVE16Q7Z3T8 1539 aa24.52■■□□□ 1.52
COPS3-212ENST00000539941 PZPP20742 1482 aa24.52■■□□□ 1.52
COPS3-212ENST00000539941 SPAG9O60271 1321 aaKnown RBP24.52■■□□□ 1.52
COPS3-212ENST00000539941 KDM4FA0A1W2PPD8 638 aa24.5■■□□□ 1.51
COPS3-212ENST00000539941 INO80Q9ULG1 1556 aaPredicted RBP24.5■■□□□ 1.51
COPS3-212ENST00000539941 ERBINQ96RT1 1412 aa24.5■■□□□ 1.51
COPS3-212ENST00000539941 SIN3AQ96ST3 1273 aa24.48■■□□□ 1.51
COPS3-212ENST00000539941 ZNF518AQ6AHZ1 1483 aa24.48■■□□□ 1.51
COPS3-212ENST00000539941 AFAP1Q8N556 730 aa24.47■■□□□ 1.51
COPS3-212ENST00000539941 SLC4A1APQ9BWU0 796 aaKnown RBP24.47■■□□□ 1.51
COPS3-212ENST00000539941 ATP7AQ04656 1500 aa24.47■■□□□ 1.51
COPS3-212ENST00000539941 UNC13BO14795 1591 aa24.46■■□□□ 1.51
COPS3-212ENST00000539941 NUP155O75694 1391 aa24.44■■□□□ 1.5
COPS3-212ENST00000539941 NEUROD1Q13562 356 aa24.43■■□□□ 1.5
COPS3-212ENST00000539941 POGZQ7Z3K3 1410 aa24.43■■□□□ 1.5
COPS3-212ENST00000539941 KDM5CP41229 1560 aa24.43■■□□□ 1.5
COPS3-212ENST00000539941 ANKRD30BQ9BXX2 1392 aa24.41■■□□□ 1.5
COPS3-212ENST00000539941 MAGI2Q86UL8 1455 aa24.4■■□□□ 1.5
COPS3-212ENST00000539941 TONSLQ96HA7 1378 aa24.38■■□□□ 1.49
COPS3-212ENST00000539941 MLH3Q9UHC1 1453 aa24.37■■□□□ 1.49
COPS3-212ENST00000539941 KIDINS220Q9ULH0 1771 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms