RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 PREX2Q70Z35 1606 aa30.45■■■□□ 2.47
CLIP1-211ENST00000539080 ARHGEF40Q8TER5 1519 aa30.45■■■□□ 2.47
CLIP1-211ENST00000539080 CDC42BPBQ9Y5S2 1711 aa30.44■■■□□ 2.46
CLIP1-211ENST00000539080 LOC105371045A0A1W2PR82 267 aa30.44■■■□□ 2.46
CLIP1-211ENST00000539080 POGZQ7Z3K3 1410 aa30.44■■■□□ 2.46
CLIP1-211ENST00000539080 MAGI2Q86UL8 1455 aa30.44■■■□□ 2.46
CLIP1-211ENST00000539080 CDC42BPAQ5VT25 1732 aa30.38■■■□□ 2.45
CLIP1-211ENST00000539080 ZFYVE16Q7Z3T8 1539 aa30.37■■■□□ 2.45
CLIP1-211ENST00000539080 MTUS2Q5JR59 1369 aa30.35■■■□□ 2.45
CLIP1-211ENST00000539080 ZNF518AQ6AHZ1 1483 aa30.35■■■□□ 2.45
CLIP1-211ENST00000539080 KDM5CP41229 1560 aa30.31■■■□□ 2.44
CLIP1-211ENST00000539080 EHBP1L1Q8N3D4 1523 aa30.31■■■□□ 2.44
CLIP1-211ENST00000539080 ABCC1P33527 1531 aa30.3■■■□□ 2.44
CLIP1-211ENST00000539080 VPS8Q8N3P4 1428 aa30.3■■■□□ 2.44
CLIP1-211ENST00000539080 YEATS2Q9ULM3 1422 aa30.3■■■□□ 2.44
CLIP1-211ENST00000539080 ADAMTSL3P82987 1691 aa30.3■■■□□ 2.44
CLIP1-211ENST00000539080 GPATCH8Q9UKJ3 1502 aaKnown RBP30.29■■■□□ 2.44
CLIP1-211ENST00000539080 BCORL1Q5H9F3 1711 aa30.29■■■□□ 2.44
CLIP1-211ENST00000539080 ITSN2Q9NZM3 1697 aa30.26■■■□□ 2.43
CLIP1-211ENST00000539080 ARID4BQ4LE39 1312 aaPredicted RBP30.25■■■□□ 2.43
CLIP1-211ENST00000539080 CCNB3Q8WWL7 1395 aa30.24■■■□□ 2.43
CLIP1-211ENST00000539080 HECW2Q9P2P5 1572 aa30.23■■■□□ 2.43
CLIP1-211ENST00000539080 AFAP1Q8N556 730 aa30.22■■■□□ 2.43
CLIP1-211ENST00000539080 ATP10AO60312 1499 aa30.22■■■□□ 2.43
CLIP1-211ENST00000539080 ARHGEF12Q9NZN5 1544 aa30.22■■■□□ 2.43
CLIP1-211ENST00000539080 TIAM1Q13009 1591 aa30.21■■■□□ 2.43
CLIP1-211ENST00000539080 SAMD9LQ8IVG5 1584 aa30.2■■■□□ 2.43
CLIP1-211ENST00000539080 MLH3Q9UHC1 1453 aa30.19■■■□□ 2.42
CLIP1-211ENST00000539080 C9orf84Q5VXU9 1444 aa30.19■■■□□ 2.42
CLIP1-211ENST00000539080 SIGLEC1Q9BZZ2 1709 aa30.18■■■□□ 2.42
CLIP1-211ENST00000539080 TRAPPC8Q9Y2L5 1435 aa30.17■■■□□ 2.42
CLIP1-211ENST00000539080 CFDP1Q9UEE9 299 aaPredicted RBP30.17■■■□□ 2.42
CLIP1-211ENST00000539080 PLEKHH2Q8IVE3 1493 aa30.17■■■□□ 2.42
CLIP1-211ENST00000539080 MADDQ8WXG6 1647 aa30.15■■■□□ 2.42
CLIP1-211ENST00000539080 SUPT6HQ7KZ85 1726 aaKnown RBP30.15■■■□□ 2.42
CLIP1-211ENST00000539080 KIAA1107Q9UPP5 1409 aa30.14■■■□□ 2.42
CLIP1-211ENST00000539080 PTPRMP28827 1452 aa30.14■■■□□ 2.42
CLIP1-211ENST00000539080 ZNF777Q9ULD5 760 aaPredicted RBP30.14■■■□□ 2.42
CLIP1-211ENST00000539080 MAP3K1Q13233 1512 aa30.13■■■□□ 2.41
CLIP1-211ENST00000539080 SYCP2Q9BX26 1530 aa30.12■■■□□ 2.41
CLIP1-211ENST00000539080 REREQ9P2R6 1566 aa30.12■■■□□ 2.41
CLIP1-211ENST00000539080 DIP2CQ9Y2E4 1556 aa30.12■■■□□ 2.41
CLIP1-211ENST00000539080 MYT1LQ9UL68 1186 aa30.1■■■□□ 2.41
CLIP1-211ENST00000539080 ABCA6Q8N139 1617 aa30.09■■■□□ 2.41
CLIP1-211ENST00000539080 NCOA2Q15596 1464 aa30.08■■■□□ 2.41
CLIP1-211ENST00000539080 LRRC9Q6ZRR7 1453 aa30.07■■■□□ 2.4
CLIP1-211ENST00000539080 KIDINS220Q9ULH0 1771 aa30.07■■■□□ 2.4
CLIP1-211ENST00000539080 RIMS1Q86UR5 1692 aaKnown RBP30.06■■■□□ 2.4
CLIP1-211ENST00000539080 HNRNPMP52272 730 aaKnown RBP eCLIP30.04■■■□□ 2.4
CLIP1-211ENST00000539080 FER1L4A9Z1Z3 1794 aa30.01■■■□□ 2.39
CLIP1-211ENST00000539080 AGLP35573 1532 aa30■■■□□ 2.39
CLIP1-211ENST00000539080 SPAG9O60271 1321 aaKnown RBP29.99■■■□□ 2.39
CLIP1-211ENST00000539080 MLECQ14165 292 aa29.98■■■□□ 2.39
CLIP1-211ENST00000539080 INO80Q9ULG1 1556 aaPredicted RBP29.98■■■□□ 2.39
CLIP1-211ENST00000539080 ATP7AQ04656 1500 aa29.97■■■□□ 2.39
CLIP1-211ENST00000539080 MBD5Q9P267 1494 aa29.96■■■□□ 2.39
CLIP1-211ENST00000539080 ZNF644Q9H582 1327 aaPredicted RBP29.96■■■□□ 2.39
CLIP1-211ENST00000539080 CAMSAP2Q08AD1 1489 aa29.92■■■□□ 2.38
CLIP1-211ENST00000539080 KANK4Q5T7N3 995 aaPredicted RBP29.91■■■□□ 2.38
CLIP1-211ENST00000539080 APLP2Q06481 763 aa29.9■■■□□ 2.38
CLIP1-211ENST00000539080 RSPH4AQ5TD94 716 aa29.88■■■□□ 2.37
CLIP1-211ENST00000539080 RTEL1-TNFRSF6BF6WH68 1400 aa29.88■■■□□ 2.37
CLIP1-211ENST00000539080 CCDC141Q6ZP82 1450 aa29.86■■■□□ 2.37
CLIP1-211ENST00000539080 PLXNC1O60486 1568 aa29.86■■■□□ 2.37
CLIP1-211ENST00000539080 ADGBQ8N7X0 1667 aa29.85■■■□□ 2.37
CLIP1-211ENST00000539080 ARHGEF5Q12774 1597 aa29.84■■■□□ 2.37
CLIP1-211ENST00000539080 A2MP01023 1474 aa29.83■■■□□ 2.37
CLIP1-211ENST00000539080 MYOM3Q5VTT5 1437 aa29.83■■■□□ 2.37
CLIP1-211ENST00000539080 MIA2Q96PC5 1412 aa29.83■■■□□ 2.37
CLIP1-211ENST00000539080 LMTK3Q96Q04 1460 aa29.78■■■□□ 2.36
CLIP1-211ENST00000539080 CNTLNQ9NXG0 1405 aa29.77■■■□□ 2.36
CLIP1-211ENST00000539080 ESF1Q9H501 851 aaKnown RBP29.76■■■□□ 2.35
CLIP1-211ENST00000539080 PLPPR3Q6T4P5 718 aa29.75■■■□□ 2.35
CLIP1-211ENST00000539080 C3P01024 1663 aa29.72■■■□□ 2.35
CLIP1-211ENST00000539080 TSPY4P0CV99 314 aa29.71■■■□□ 2.35
CLIP1-211ENST00000539080 TSPY10P0CW01 314 aa29.71■■■□□ 2.35
CLIP1-211ENST00000539080 MROH2AA6NES4 1674 aa29.71■■■□□ 2.35
CLIP1-211ENST00000539080 DHX29Q7Z478 1369 aaKnown RBP29.7■■■□□ 2.35
CLIP1-211ENST00000539080 PREX1Q8TCU6 1659 aa29.69■■■□□ 2.34
CLIP1-211ENST00000539080 MAST1Q9Y2H9 1570 aa29.69■■■□□ 2.34
CLIP1-211ENST00000539080 CEBPAP49715 358 aaPredicted RBP29.68■■■□□ 2.34
CLIP1-211ENST00000539080 PPP6R1Q9UPN7 881 aa29.66■■■□□ 2.34
CLIP1-211ENST00000539080 PTPN23Q9H3S7 1636 aa29.64■■■□□ 2.34
CLIP1-211ENST00000539080 SETD1BQ9UPS6 1966 aaKnown RBP29.64■■■□□ 2.34
CLIP1-211ENST00000539080 CLTCQ00610 1675 aaKnown RBP29.61■■■□□ 2.33
CLIP1-211ENST00000539080 FGD6Q6ZV73 1430 aa29.61■■■□□ 2.33
CLIP1-211ENST00000539080 GGT6Q6P531 493 aa29.6■■■□□ 2.33
CLIP1-211ENST00000539080 TCOF1Q13428 1488 aaKnown RBP29.59■■■□□ 2.33
CLIP1-211ENST00000539080 ZMYM3Q14202 1370 aa29.58■■■□□ 2.33
CLIP1-211ENST00000539080 UHRF1BP1Q6BDS2 1440 aa29.58■■■□□ 2.33
CLIP1-211ENST00000539080 FAM135AQ9P2D6 1515 aa29.57■■■□□ 2.32
CLIP1-211ENST00000539080 SHANK2Q9UPX8 1470 aa29.56■■■□□ 2.32
CLIP1-211ENST00000539080 NPATQ14207 1427 aa29.56■■■□□ 2.32
CLIP1-211ENST00000539080 CROCC2H7BZ55 1655 aa29.56■■■□□ 2.32
CLIP1-211ENST00000539080 KIF3BO15066 747 aa29.54■■■□□ 2.32
CLIP1-211ENST00000539080 HSPA2P54652 639 aa29.54■■■□□ 2.32
CLIP1-211ENST00000539080 DNMT1P26358 1616 aaKnown RBP29.53■■■□□ 2.32
CLIP1-211ENST00000539080 EIF2AK4Q9P2K8 1649 aaKnown RBP29.51■■■□□ 2.31
CLIP1-211ENST00000539080 ABCC5O15440 1437 aa29.51■■■□□ 2.31
CLIP1-211ENST00000539080 DAPK1P53355 1430 aa29.49■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms