RNA–Protein interactions for RNA: ENST00000538827.5

CD4-208, Transcript of CD4 molecule, humanhuman

TSL 1 (best)

Gene CD4, Length 985 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-208ENST00000538827 TRIM26Q12899 539 aaPredicted RBP21.65■■□□□ 1.06
CD4-208ENST00000538827 MYO5CQ9NQX4 1742 aa21.65■■□□□ 1.06
CD4-208ENST00000538827 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.64■■□□□ 1.05
CD4-208ENST00000538827 KCNH8Q96L42 1107 aa21.63■■□□□ 1.05
CD4-208ENST00000538827 PREX2Q70Z35 1606 aa21.62■■□□□ 1.05
CD4-208ENST00000538827 FGD6Q6ZV73 1430 aa21.62■■□□□ 1.05
CD4-208ENST00000538827 PTPN23Q9H3S7 1636 aa21.61■■□□□ 1.05
CD4-208ENST00000538827 RRBP1Q9P2E9 1410 aaKnown RBP21.61■■□□□ 1.05
CD4-208ENST00000538827 ABCA9Q8IUA7 1624 aa21.58■■□□□ 1.05
CD4-208ENST00000538827 LMTK3Q96Q04 1460 aa21.58■■□□□ 1.05
CD4-208ENST00000538827 GPATCH8Q9UKJ3 1502 aaKnown RBP21.56■■□□□ 1.04
CD4-208ENST00000538827 CDC42BPBQ9Y5S2 1711 aa21.56■■□□□ 1.04
CD4-208ENST00000538827 PCGF6Q9BYE7 350 aa21.55■■□□□ 1.04
CD4-208ENST00000538827 ARHGAP5Q13017 1502 aa21.55■■□□□ 1.04
CD4-208ENST00000538827 FAM50AQ14320 339 aaKnown RBP21.54■■□□□ 1.04
CD4-208ENST00000538827 MIA2Q96PC5 1412 aa21.54■■□□□ 1.04
CD4-208ENST00000538827 CAMSAP2Q08AD1 1489 aa21.51■■□□□ 1.03
CD4-208ENST00000538827 TCOF1Q13428 1488 aaKnown RBP21.51■■□□□ 1.03
CD4-208ENST00000538827 CD109Q6YHK3 1445 aa21.49■■□□□ 1.03
CD4-208ENST00000538827 CFDP1Q9UEE9 299 aaPredicted RBP21.49■■□□□ 1.03
CD4-208ENST00000538827 ZNF777Q9ULD5 760 aaPredicted RBP21.47■■□□□ 1.03
CD4-208ENST00000538827 SAMD9LQ8IVG5 1584 aa21.47■■□□□ 1.03
CD4-208ENST00000538827 PLCH2O75038 1416 aa21.45■■□□□ 1.02
CD4-208ENST00000538827 PTPRMP28827 1452 aa21.45■■□□□ 1.02
CD4-208ENST00000538827 ARAP3Q8WWN8 1544 aa21.45■■□□□ 1.02
CD4-208ENST00000538827 ITGAEP38570 1179 aa21.44■■□□□ 1.02
CD4-208ENST00000538827 CFAP74Q9C0B2 1584 aa21.44■■□□□ 1.02
CD4-208ENST00000538827 SOCS7O14512 581 aa21.43■■□□□ 1.02
CD4-208ENST00000538827 DNMT1P26358 1616 aaKnown RBP21.42■■□□□ 1.02
CD4-208ENST00000538827 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.42■■□□□ 1.02
CD4-208ENST00000538827 CROCC2H7BZ55 1655 aa21.41■■□□□ 1.02
CD4-208ENST00000538827 ZNF644Q9H582 1327 aaPredicted RBP21.41■■□□□ 1.02
CD4-208ENST00000538827 SYCP2Q9BX26 1530 aa21.4■■□□□ 1.02
CD4-208ENST00000538827 ABCC1P33527 1531 aa21.39■■□□□ 1.01
CD4-208ENST00000538827 FANCAO15360 1455 aa21.39■■□□□ 1.01
CD4-208ENST00000538827 PLEKHH2Q8IVE3 1493 aa21.37■■□□□ 1.01
CD4-208ENST00000538827 ADAMTSL3P82987 1691 aa21.37■■□□□ 1.01
CD4-208ENST00000538827 EFCAB2Q5VUJ9 269 aa21.35■■□□□ 1.01
CD4-208ENST00000538827 DAPK1P53355 1430 aa21.35■■□□□ 1.01
CD4-208ENST00000538827 ARHGEF5Q12774 1597 aa21.35■■□□□ 1.01
CD4-208ENST00000538827 ADGBQ8N7X0 1667 aa21.34■■□□□ 1.01
CD4-208ENST00000538827 CERKQ8TCT0 537 aa21.32■■□□□ 1
CD4-208ENST00000538827 CCDC141Q6ZP82 1450 aa21.32■■□□□ 1
CD4-208ENST00000538827 DISP3Q9P2K9 1392 aa21.31■■□□□ 1
CD4-208ENST00000538827 ABCC5O15440 1437 aa21.3■■□□□ 1
CD4-208ENST00000538827 ILDR2Q71H61 639 aa21.3■■□□□ 1
CD4-208ENST00000538827 PTPRKQ15262 1439 aa21.29■■□□□ 1
CD4-208ENST00000538827 AKNAQ7Z591 1439 aa21.29■■□□□ 1
CD4-208ENST00000538827 HNRNPMP52272 730 aaKnown RBP eCLIP21.28■■□□□ 1
CD4-208ENST00000538827 ARHGEF12Q9NZN5 1544 aa21.28■■□□□ 1
CD4-208ENST00000538827 KIAA1107Q9UPP5 1409 aa21.27■■□□□ 1
CD4-208ENST00000538827 NEO1Q92859 1461 aa21.26■□□□□ 0.99
CD4-208ENST00000538827 MBD5Q9P267 1494 aa21.26■□□□□ 0.99
CD4-208ENST00000538827 SHANK2Q9UPX8 1470 aa21.26■□□□□ 0.99
CD4-208ENST00000538827 GCC2Q8IWJ2 1684 aa21.25■□□□□ 0.99
CD4-208ENST00000538827 CHIC2Q9UKJ5 165 aa21.24■□□□□ 0.99
CD4-208ENST00000538827 ARID4BQ4LE39 1312 aaPredicted RBP21.24■□□□□ 0.99
CD4-208ENST00000538827 C9orf84Q5VXU9 1444 aa21.23■□□□□ 0.99
CD4-208ENST00000538827 SCAPERQ9BY12 1400 aa21.23■□□□□ 0.99
CD4-208ENST00000538827 MAST1Q9Y2H9 1570 aa21.23■□□□□ 0.99
CD4-208ENST00000538827 BCORL1Q5H9F3 1711 aa21.22■□□□□ 0.99
CD4-208ENST00000538827 TRAPPC8Q9Y2L5 1435 aa21.21■□□□□ 0.99
CD4-208ENST00000538827 MADDQ8WXG6 1647 aa21.19■□□□□ 0.98
CD4-208ENST00000538827 ADGRL2O95490 1459 aa21.19■□□□□ 0.98
CD4-208ENST00000538827 RAPGEF3O95398 923 aa21.18■□□□□ 0.98
CD4-208ENST00000538827 HSPA2P54652 639 aa21.18■□□□□ 0.98
CD4-208ENST00000538827 POGZQ7Z3K3 1410 aa21.18■□□□□ 0.98
CD4-208ENST00000538827 TSPY4P0CV99 314 aa21.17■□□□□ 0.98
CD4-208ENST00000538827 TSPY10P0CW01 314 aa21.17■□□□□ 0.98
CD4-208ENST00000538827 ZNF518AQ6AHZ1 1483 aa21.17■□□□□ 0.98
CD4-208ENST00000538827 INO80Q9ULG1 1556 aaPredicted RBP21.17■□□□□ 0.98
CD4-208ENST00000538827 RICTORQ6R327 1708 aa21.17■□□□□ 0.98
CD4-208ENST00000538827 PLXNC1O60486 1568 aa21.16■□□□□ 0.98
CD4-208ENST00000538827 ZFYVE16Q7Z3T8 1539 aa21.16■□□□□ 0.98
CD4-208ENST00000538827 DENND4BO75064 1496 aaPredicted RBP21.16■□□□□ 0.98
CD4-208ENST00000538827 ROCK1Q13464 1354 aa21.16■□□□□ 0.98
CD4-208ENST00000538827 RSPH4AQ5TD94 716 aa21.16■□□□□ 0.98
CD4-208ENST00000538827 RRP7BPQ9NSQ0 103 aa21.16■□□□□ 0.98
CD4-208ENST00000538827 HFM1A2PYH4 1435 aa21.15■□□□□ 0.98
CD4-208ENST00000538827 ANKRD30AQ9BXX3 1397 aa21.15■□□□□ 0.98
CD4-208ENST00000538827 ATP7AQ04656 1500 aa21.14■□□□□ 0.98
CD4-208ENST00000538827 SETD5Q9C0A6 1442 aa21.14■□□□□ 0.98
CD4-208ENST00000538827 KDM5CP41229 1560 aa21.14■□□□□ 0.97
CD4-208ENST00000538827 FRMPD1Q5SYB0 1578 aa21.14■□□□□ 0.97
CD4-208ENST00000538827 NAIPQ13075 1403 aa21.12■□□□□ 0.97
CD4-208ENST00000538827 SPAG9O60271 1321 aaKnown RBP21.12■□□□□ 0.97
CD4-208ENST00000538827 MYT1LQ9UL68 1186 aa21.12■□□□□ 0.97
CD4-208ENST00000538827 AFAP1Q8N556 730 aa21.11■□□□□ 0.97
CD4-208ENST00000538827 RAB3GAP2Q9H2M9 1393 aa21.1■□□□□ 0.97
CD4-208ENST00000538827 NCOA1Q15788 1441 aa21.1■□□□□ 0.97
CD4-208ENST00000538827 KIDINS220Q9ULH0 1771 aa21.1■□□□□ 0.97
CD4-208ENST00000538827 KIF15Q9NS87 1388 aa21.09■□□□□ 0.97
CD4-208ENST00000538827 RIMS1Q86UR5 1692 aaKnown RBP21.08■□□□□ 0.96
CD4-208ENST00000538827 RTEL1-TNFRSF6BF6WH68 1400 aa21.06■□□□□ 0.96
CD4-208ENST00000538827 ABCA6Q8N139 1617 aa21.06■□□□□ 0.96
CD4-208ENST00000538827 ZMYM4Q5VZL5 1548 aa21.05■□□□□ 0.96
CD4-208ENST00000538827 DMRT2Q9Y5R5 561 aa21.05■□□□□ 0.96
CD4-208ENST00000538827 DUOX2Q9NRD8 1548 aa21.04■□□□□ 0.96
CD4-208ENST00000538827 MLH3Q9UHC1 1453 aa21.02■□□□□ 0.96
CD4-208ENST00000538827 ANKRD50Q9ULJ7 1429 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms