RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 RANGAP1P46060 587 aaPredicted RBP10.58□□□□□ -0.72
PTPRB-203ENST00000538174 ZFYVE16Q7Z3T8 1539 aa10.56□□□□□ -0.72
PTPRB-203ENST00000538174 SAMD9Q5K651 1589 aa10.55□□□□□ -0.72
PTPRB-203ENST00000538174 STRCQ7RTU9 1775 aa10.55□□□□□ -0.72
PTPRB-203ENST00000538174 MROH2AA6NES4 1674 aa10.55□□□□□ -0.72
PTPRB-203ENST00000538174 DENND4BO75064 1496 aaPredicted RBP10.55□□□□□ -0.72
PTPRB-203ENST00000538174 LTBP4Q8N2S1 1624 aa10.55□□□□□ -0.72
PTPRB-203ENST00000538174 AGLP35573 1532 aa10.54□□□□□ -0.72
PTPRB-203ENST00000538174 HRCP23327 699 aa10.54□□□□□ -0.72
PTPRB-203ENST00000538174 KLHL34Q8N239 644 aa10.54□□□□□ -0.72
PTPRB-203ENST00000538174 BCL11AQ9H165 835 aa10.54□□□□□ -0.72
PTPRB-203ENST00000538174 SETD1BQ9UPS6 1966 aaKnown RBP10.53□□□□□ -0.72
PTPRB-203ENST00000538174 FAM9AQ8IZU1 332 aaPredicted RBP10.52□□□□□ -0.72
PTPRB-203ENST00000538174 RAPGEF6Q8TEU7 1601 aa10.52□□□□□ -0.73
PTPRB-203ENST00000538174 ATP10BO94823 1461 aa10.5□□□□□ -0.73
PTPRB-203ENST00000538174 PLEKHG5O94827 1062 aa10.5□□□□□ -0.73
PTPRB-203ENST00000538174 ZNF142P52746 1687 aaPredicted RBP10.5□□□□□ -0.73
PTPRB-203ENST00000538174 DISP3Q9P2K9 1392 aa10.5□□□□□ -0.73
PTPRB-203ENST00000538174 C9orf84Q5VXU9 1444 aa10.5□□□□□ -0.73
PTPRB-203ENST00000538174 FAM135AQ9P2D6 1515 aa10.49□□□□□ -0.73
PTPRB-203ENST00000538174 NPATQ14207 1427 aa10.48□□□□□ -0.73
PTPRB-203ENST00000538174 TULP1O00294 542 aaPredicted RBP10.48□□□□□ -0.73
PTPRB-203ENST00000538174 CNTLNQ9NXG0 1405 aa10.48□□□□□ -0.73
PTPRB-203ENST00000538174 PLA2R1Q13018 1463 aa10.48□□□□□ -0.73
PTPRB-203ENST00000538174 KDM5CP41229 1560 aa10.48□□□□□ -0.73
PTPRB-203ENST00000538174 TRIM26Q12899 539 aaPredicted RBP10.47□□□□□ -0.73
PTPRB-203ENST00000538174 ATP10AO60312 1499 aa10.47□□□□□ -0.73
PTPRB-203ENST00000538174 KCNA4P22459 653 aa10.47□□□□□ -0.73
PTPRB-203ENST00000538174 PRXQ9BXM0 1461 aa10.45□□□□□ -0.74
PTPRB-203ENST00000538174 UHRF1BP1Q6BDS2 1440 aa10.45□□□□□ -0.74
PTPRB-203ENST00000538174 ZEB1P37275 1124 aaPredicted RBP10.43□□□□□ -0.74
PTPRB-203ENST00000538174 NCOA1Q15788 1441 aa10.43□□□□□ -0.74
PTPRB-203ENST00000538174 HECW1Q76N89 1606 aa10.43□□□□□ -0.74
PTPRB-203ENST00000538174 ILDR2Q71H61 639 aa10.42□□□□□ -0.74
PTPRB-203ENST00000538174 SIGLEC1Q9BZZ2 1709 aa10.41□□□□□ -0.74
PTPRB-203ENST00000538174 CPS1P31327 1500 aa10.41□□□□□ -0.74
PTPRB-203ENST00000538174 HOMEZQ8IX15 550 aa10.4□□□□□ -0.75
PTPRB-203ENST00000538174 C3P01024 1663 aa10.39□□□□□ -0.75
PTPRB-203ENST00000538174 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.39□□□□□ -0.75
PTPRB-203ENST00000538174 MLH3Q9UHC1 1453 aa10.39□□□□□ -0.75
PTPRB-203ENST00000538174 MYO5CQ9NQX4 1742 aa10.38□□□□□ -0.75
PTPRB-203ENST00000538174 MED1Q15648 1581 aaPredicted RBP10.38□□□□□ -0.75
PTPRB-203ENST00000538174 PLCH2O75038 1416 aa10.37□□□□□ -0.75
PTPRB-203ENST00000538174 TRAPPC8Q9Y2L5 1435 aa10.37□□□□□ -0.75
PTPRB-203ENST00000538174 ZNF518AQ6AHZ1 1483 aa10.37□□□□□ -0.75
PTPRB-203ENST00000538174 NUP153P49790 1475 aaKnown RBP10.36□□□□□ -0.75
PTPRB-203ENST00000538174 DIP2CQ9Y2E4 1556 aa10.35□□□□□ -0.75
PTPRB-203ENST00000538174 TCOF1Q13428 1488 aaKnown RBP10.35□□□□□ -0.75
PTPRB-203ENST00000538174 SYNMO15061 1565 aa10.33□□□□□ -0.76
PTPRB-203ENST00000538174 LOC105371045A0A1W2PR82 267 aa10.32□□□□□ -0.76
PTPRB-203ENST00000538174 TAOK2Q9UL54 1235 aa10.32□□□□□ -0.76
PTPRB-203ENST00000538174 PODXL2Q9NZ53 605 aa10.32□□□□□ -0.76
PTPRB-203ENST00000538174 PKD2Q13563 968 aa10.31□□□□□ -0.76
PTPRB-203ENST00000538174 PPP6R1Q9UPN7 881 aa10.31□□□□□ -0.76
PTPRB-203ENST00000538174 DEPDC5O75140 1603 aa10.3□□□□□ -0.76
PTPRB-203ENST00000538174 ITSN2Q9NZM3 1697 aa10.29□□□□□ -0.76
PTPRB-203ENST00000538174 MYO3AQ8NEV4 1616 aa10.28□□□□□ -0.76
PTPRB-203ENST00000538174 POLR1AO95602 1720 aaPredicted RBP10.28□□□□□ -0.76
PTPRB-203ENST00000538174 PTPRKQ15262 1439 aa10.28□□□□□ -0.76
PTPRB-203ENST00000538174 PCGF6Q9BYE7 350 aa10.27□□□□□ -0.77
PTPRB-203ENST00000538174 KIF14Q15058 1648 aa10.27□□□□□ -0.77
PTPRB-203ENST00000538174 ABCA6Q8N139 1617 aa10.27□□□□□ -0.77
PTPRB-203ENST00000538174 ARID4BQ4LE39 1312 aaPredicted RBP10.26□□□□□ -0.77
PTPRB-203ENST00000538174 PLXNC1O60486 1568 aa10.26□□□□□ -0.77
PTPRB-203ENST00000538174 CAMSAP1Q5T5Y3 1602 aa10.26□□□□□ -0.77
PTPRB-203ENST00000538174 CSRNP3Q8WYN3 585 aa10.26□□□□□ -0.77
PTPRB-203ENST00000538174 RAPGEF3O95398 923 aa10.25□□□□□ -0.77
PTPRB-203ENST00000538174 PREX2Q70Z35 1606 aa10.25□□□□□ -0.77
PTPRB-203ENST00000538174 ABCC1P33527 1531 aa10.25□□□□□ -0.77
PTPRB-203ENST00000538174 CEP170BQ9Y4F5 1589 aaPredicted RBP10.24□□□□□ -0.77
PTPRB-203ENST00000538174 SCAPERQ9BY12 1400 aa10.24□□□□□ -0.77
PTPRB-203ENST00000538174 RNF17Q9BXT8 1623 aaKnown RBP10.24□□□□□ -0.77
PTPRB-203ENST00000538174 MED14O60244 1454 aa10.24□□□□□ -0.77
PTPRB-203ENST00000538174 KCNH8Q96L42 1107 aa10.23□□□□□ -0.77
PTPRB-203ENST00000538174 PLEKHD1A6NEE1 506 aa10.22□□□□□ -0.77
PTPRB-203ENST00000538174 A2ML1A8K2U0 1454 aa10.22□□□□□ -0.77
PTPRB-203ENST00000538174 SUPT6HQ7KZ85 1726 aaKnown RBP10.22□□□□□ -0.77
PTPRB-203ENST00000538174 HSPA2P54652 639 aa10.2□□□□□ -0.78
PTPRB-203ENST00000538174 ADGBQ8N7X0 1667 aa10.2□□□□□ -0.78
PTPRB-203ENST00000538174 PLEKHH2Q8IVE3 1493 aa10.2□□□□□ -0.78
PTPRB-203ENST00000538174 EFCAB2Q5VUJ9 269 aa10.2□□□□□ -0.78
PTPRB-203ENST00000538174 KIDINS220Q9ULH0 1771 aa10.2□□□□□ -0.78
PTPRB-203ENST00000538174 CEP162Q5TB80 1403 aa10.19□□□□□ -0.78
PTPRB-203ENST00000538174 INO80Q9ULG1 1556 aaPredicted RBP10.18□□□□□ -0.78
PTPRB-203ENST00000538174 VWDEQ8N2E2 1590 aa10.18□□□□□ -0.78
PTPRB-203ENST00000538174 CLIP1P30622 1438 aa10.18□□□□□ -0.78
PTPRB-203ENST00000538174 TROQ12816 1431 aaPredicted RBP10.17□□□□□ -0.78
PTPRB-203ENST00000538174 NEURL4Q96JN8 1562 aa10.17□□□□□ -0.78
PTPRB-203ENST00000538174 FMN1Q68DA7 1419 aa10.17□□□□□ -0.78
PTPRB-203ENST00000538174 TPRNQ4KMQ1 711 aa10.17□□□□□ -0.78
PTPRB-203ENST00000538174 CDC42BPBQ9Y5S2 1711 aa10.16□□□□□ -0.78
PTPRB-203ENST00000538174 KIAA1107Q9UPP5 1409 aa10.16□□□□□ -0.78
PTPRB-203ENST00000538174 DNMT1P26358 1616 aaKnown RBP10.15□□□□□ -0.78
PTPRB-203ENST00000538174 ALKQ9UM73 1620 aa10.15□□□□□ -0.78
PTPRB-203ENST00000538174 CCDC18Q5T9S5 1454 aa10.15□□□□□ -0.78
PTPRB-203ENST00000538174 SHANK2Q9UPX8 1470 aa10.15□□□□□ -0.78
PTPRB-203ENST00000538174 NLRP1Q9C000 1473 aa10.15□□□□□ -0.78
PTPRB-203ENST00000538174 KDM5AP29375 1690 aaKnown RBP10.14□□□□□ -0.79
PTPRB-203ENST00000538174 ZC3H13Q5T200 1668 aaKnown RBP10.13□□□□□ -0.79
PTPRB-203ENST00000538174 TOM1O60784 492 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms