RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ARHGAP5Q13017 1502 aa23.72■■□□□ 1.39
USP28-204ENST00000537642 ZMYM4Q5VZL5 1548 aa23.7■■□□□ 1.38
USP28-204ENST00000537642 PREX2Q70Z35 1606 aa23.7■■□□□ 1.38
USP28-204ENST00000537642 POGZQ7Z3K3 1410 aa23.68■■□□□ 1.38
USP28-204ENST00000537642 ARHGEF40Q8TER5 1519 aa23.68■■□□□ 1.38
USP28-204ENST00000537642 CDC42BPAQ5VT25 1732 aa23.67■■□□□ 1.38
USP28-204ENST00000537642 MTUS2Q5JR59 1369 aa23.64■■□□□ 1.37
USP28-204ENST00000537642 MAGI2Q86UL8 1455 aa23.62■■□□□ 1.37
USP28-204ENST00000537642 YEATS2Q9ULM3 1422 aa23.62■■□□□ 1.37
USP28-204ENST00000537642 ZFYVE16Q7Z3T8 1539 aa23.62■■□□□ 1.37
USP28-204ENST00000537642 VPS8Q8N3P4 1428 aa23.6■■□□□ 1.37
USP28-204ENST00000537642 GPATCH8Q9UKJ3 1502 aaKnown RBP23.6■■□□□ 1.37
USP28-204ENST00000537642 ZNF518AQ6AHZ1 1483 aa23.59■■□□□ 1.37
USP28-204ENST00000537642 ABCC1P33527 1531 aa23.59■■□□□ 1.37
USP28-204ENST00000537642 EHBP1L1Q8N3D4 1523 aa23.59■■□□□ 1.37
USP28-204ENST00000537642 KDM5CP41229 1560 aa23.57■■□□□ 1.36
USP28-204ENST00000537642 AFAP1Q8N556 730 aa23.57■■□□□ 1.36
USP28-204ENST00000537642 ARHGEF12Q9NZN5 1544 aa23.57■■□□□ 1.36
USP28-204ENST00000537642 ADAMTSL3P82987 1691 aa23.57■■□□□ 1.36
USP28-204ENST00000537642 BCORL1Q5H9F3 1711 aa23.56■■□□□ 1.36
USP28-204ENST00000537642 ITSN2Q9NZM3 1697 aa23.56■■□□□ 1.36
USP28-204ENST00000537642 ARID4BQ4LE39 1312 aaPredicted RBP23.56■■□□□ 1.36
USP28-204ENST00000537642 SIGLEC1Q9BZZ2 1709 aa23.55■■□□□ 1.36
USP28-204ENST00000537642 CCNB3Q8WWL7 1395 aa23.54■■□□□ 1.36
USP28-204ENST00000537642 SAMD9LQ8IVG5 1584 aa23.54■■□□□ 1.36
USP28-204ENST00000537642 TRAPPC8Q9Y2L5 1435 aa23.54■■□□□ 1.36
USP28-204ENST00000537642 TIAM1Q13009 1591 aa23.53■■□□□ 1.36
USP28-204ENST00000537642 ZNF777Q9ULD5 760 aaPredicted RBP23.52■■□□□ 1.36
USP28-204ENST00000537642 HECW2Q9P2P5 1572 aa23.51■■□□□ 1.35
USP28-204ENST00000537642 ATP10AO60312 1499 aa23.5■■□□□ 1.35
USP28-204ENST00000537642 CFDP1Q9UEE9 299 aaPredicted RBP23.5■■□□□ 1.35
USP28-204ENST00000537642 C9orf84Q5VXU9 1444 aa23.48■■□□□ 1.35
USP28-204ENST00000537642 MLH3Q9UHC1 1453 aa23.48■■□□□ 1.35
USP28-204ENST00000537642 SYCP2Q9BX26 1530 aa23.48■■□□□ 1.35
USP28-204ENST00000537642 MADDQ8WXG6 1647 aa23.48■■□□□ 1.35
USP28-204ENST00000537642 SUPT6HQ7KZ85 1726 aaKnown RBP23.47■■□□□ 1.35
USP28-204ENST00000537642 DIP2CQ9Y2E4 1556 aa23.45■■□□□ 1.34
USP28-204ENST00000537642 NCOA2Q15596 1464 aa23.45■■□□□ 1.34
USP28-204ENST00000537642 MYT1LQ9UL68 1186 aa23.45■■□□□ 1.34
USP28-204ENST00000537642 ABCA6Q8N139 1617 aa23.44■■□□□ 1.34
USP28-204ENST00000537642 PTPRMP28827 1452 aa23.44■■□□□ 1.34
USP28-204ENST00000537642 HNRNPMP52272 730 aaKnown RBP eCLIP23.44■■□□□ 1.34
USP28-204ENST00000537642 MAP3K1Q13233 1512 aa23.43■■□□□ 1.34
USP28-204ENST00000537642 LRRC9Q6ZRR7 1453 aa23.43■■□□□ 1.34
USP28-204ENST00000537642 PLEKHH2Q8IVE3 1493 aa23.43■■□□□ 1.34
USP28-204ENST00000537642 KIAA1107Q9UPP5 1409 aa23.43■■□□□ 1.34
USP28-204ENST00000537642 KIDINS220Q9ULH0 1771 aa23.42■■□□□ 1.34
USP28-204ENST00000537642 RIMS1Q86UR5 1692 aaKnown RBP23.41■■□□□ 1.34
USP28-204ENST00000537642 ZNF644Q9H582 1327 aaPredicted RBP23.4■■□□□ 1.34
USP28-204ENST00000537642 REREQ9P2R6 1566 aa23.4■■□□□ 1.34
USP28-204ENST00000537642 MLECQ14165 292 aa23.39■■□□□ 1.33
USP28-204ENST00000537642 KANK4Q5T7N3 995 aaPredicted RBP23.38■■□□□ 1.33
USP28-204ENST00000537642 SPAG9O60271 1321 aaKnown RBP23.35■■□□□ 1.33
USP28-204ENST00000537642 FER1L4A9Z1Z3 1794 aa23.35■■□□□ 1.33
USP28-204ENST00000537642 MBD5Q9P267 1494 aa23.35■■□□□ 1.33
USP28-204ENST00000537642 INO80Q9ULG1 1556 aaPredicted RBP23.33■■□□□ 1.33
USP28-204ENST00000537642 ATP7AQ04656 1500 aa23.33■■□□□ 1.32
USP28-204ENST00000537642 CAMSAP2Q08AD1 1489 aa23.31■■□□□ 1.32
USP28-204ENST00000537642 AGLP35573 1532 aa23.31■■□□□ 1.32
USP28-204ENST00000537642 APLP2Q06481 763 aa23.27■■□□□ 1.32
USP28-204ENST00000537642 PLPPR3Q6T4P5 718 aa23.24■■□□□ 1.31
USP28-204ENST00000537642 CCDC141Q6ZP82 1450 aa23.24■■□□□ 1.31
USP28-204ENST00000537642 RTEL1-TNFRSF6BF6WH68 1400 aa23.23■■□□□ 1.31
USP28-204ENST00000537642 MYOM3Q5VTT5 1437 aa23.23■■□□□ 1.31
USP28-204ENST00000537642 A2MP01023 1474 aa23.23■■□□□ 1.31
USP28-204ENST00000537642 PLXNC1O60486 1568 aa23.23■■□□□ 1.31
USP28-204ENST00000537642 ARHGEF5Q12774 1597 aa23.22■■□□□ 1.31
USP28-204ENST00000537642 ADGBQ8N7X0 1667 aa23.21■■□□□ 1.31
USP28-204ENST00000537642 MIA2Q96PC5 1412 aa23.2■■□□□ 1.3
USP28-204ENST00000537642 RSPH4AQ5TD94 716 aa23.2■■□□□ 1.3
USP28-204ENST00000537642 LMTK3Q96Q04 1460 aa23.17■■□□□ 1.3
USP28-204ENST00000537642 CEBPAP49715 358 aaPredicted RBP23.17■■□□□ 1.3
USP28-204ENST00000537642 C3P01024 1663 aa23.13■■□□□ 1.29
USP28-204ENST00000537642 DHX29Q7Z478 1369 aaKnown RBP23.13■■□□□ 1.29
USP28-204ENST00000537642 ESF1Q9H501 851 aaKnown RBP23.12■■□□□ 1.29
USP28-204ENST00000537642 CNTLNQ9NXG0 1405 aa23.11■■□□□ 1.29
USP28-204ENST00000537642 TSPY4P0CV99 314 aa23.11■■□□□ 1.29
USP28-204ENST00000537642 TSPY10P0CW01 314 aa23.11■■□□□ 1.29
USP28-204ENST00000537642 PTPN23Q9H3S7 1636 aa23.1■■□□□ 1.29
USP28-204ENST00000537642 MAST1Q9Y2H9 1570 aa23.1■■□□□ 1.29
USP28-204ENST00000537642 GGT6Q6P531 493 aa23.08■■□□□ 1.29
USP28-204ENST00000537642 MROH2AA6NES4 1674 aa23.08■■□□□ 1.29
USP28-204ENST00000537642 SETD1BQ9UPS6 1966 aaKnown RBP23.08■■□□□ 1.29
USP28-204ENST00000537642 FGD6Q6ZV73 1430 aa23.08■■□□□ 1.28
USP28-204ENST00000537642 PREX1Q8TCU6 1659 aa23.07■■□□□ 1.28
USP28-204ENST00000537642 CLTCQ00610 1675 aaKnown RBP23.06■■□□□ 1.28
USP28-204ENST00000537642 HSPA2P54652 639 aa23.05■■□□□ 1.28
USP28-204ENST00000537642 TCOF1Q13428 1488 aaKnown RBP23.05■■□□□ 1.28
USP28-204ENST00000537642 ZMYM3Q14202 1370 aa23.02■■□□□ 1.28
USP28-204ENST00000537642 ABCC5O15440 1437 aa23.02■■□□□ 1.28
USP28-204ENST00000537642 KIF3BO15066 747 aa23.02■■□□□ 1.28
USP28-204ENST00000537642 PPP6R1Q9UPN7 881 aa23.02■■□□□ 1.28
USP28-204ENST00000537642 CROCC2H7BZ55 1655 aa23.02■■□□□ 1.28
USP28-204ENST00000537642 DNMT1P26358 1616 aaKnown RBP22.99■■□□□ 1.27
USP28-204ENST00000537642 UHRF1BP1Q6BDS2 1440 aa22.99■■□□□ 1.27
USP28-204ENST00000537642 SHANK2Q9UPX8 1470 aa22.98■■□□□ 1.27
USP28-204ENST00000537642 DAPK1P53355 1430 aa22.98■■□□□ 1.27
USP28-204ENST00000537642 NPATQ14207 1427 aa22.96■■□□□ 1.27
USP28-204ENST00000537642 RNF17Q9BXT8 1623 aaKnown RBP22.93■■□□□ 1.26
USP28-204ENST00000537642 EIF2AK4Q9P2K8 1649 aaKnown RBP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms