RNA–Protein interactions for RNA: ENST00000536823.5

YBX3-206, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 840 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-206ENST00000536823 BAZ1AQ9NRL2 1556 aaPredicted RBP13.45□□□□□ -0.26
YBX3-206ENST00000536823 NCAPD3P42695 1498 aa13.44□□□□□ -0.26
YBX3-206ENST00000536823 ATAD2BQ9ULI0 1458 aa13.44□□□□□ -0.26
YBX3-206ENST00000536823 VASPP50552 380 aaPredicted RBP13.43□□□□□ -0.26
YBX3-206ENST00000536823 SMARCA2P51531 1590 aa13.43□□□□□ -0.26
YBX3-206ENST00000536823 HMGXB3Q12766 1538 aa13.4□□□□□ -0.26
YBX3-206ENST00000536823 RIMBP2O15034 1052 aa13.39□□□□□ -0.27
YBX3-206ENST00000536823 VARS2Q5ST30 1063 aaKnown RBP13.38□□□□□ -0.27
YBX3-206ENST00000536823 MYT1LQ9UL68 1186 aa13.38□□□□□ -0.27
YBX3-206ENST00000536823 PEG3Q9GZU2 1588 aa13.37□□□□□ -0.27
YBX3-206ENST00000536823 MROH2BQ7Z745 1585 aa13.35□□□□□ -0.27
YBX3-206ENST00000536823 BAZ1BQ9UIG0 1483 aaKnown RBP13.32□□□□□ -0.28
YBX3-206ENST00000536823 CIZ1Q9ULV3 898 aaPredicted RBP13.29□□□□□ -0.28
YBX3-206ENST00000536823 ZNF687Q8N1G0 1237 aa13.28□□□□□ -0.28
YBX3-206ENST00000536823 ZSWIM6Q9HCJ5 1215 aa13.26□□□□□ -0.29
YBX3-206ENST00000536823 PTGER2P43116 358 aa13.23□□□□□ -0.29
YBX3-206ENST00000536823 EFCAB3Q8N7B9 438 aa13.23□□□□□ -0.29
YBX3-206ENST00000536823 SPOCK2Q92563 424 aa13.22□□□□□ -0.29
YBX3-206ENST00000536823 TMEM92Q6UXU6 159 aa13.2□□□□□ -0.3
YBX3-206ENST00000536823 MICALL2Q8IY33 904 aa13.2□□□□□ -0.3
YBX3-206ENST00000536823 GPR153Q6NV75 609 aa13.19□□□□□ -0.3
YBX3-206ENST00000536823 WIZO95785 1651 aa13.18□□□□□ -0.3
YBX3-206ENST00000536823 NESP48681 1621 aa13.16□□□□□ -0.3
YBX3-206ENST00000536823 ERCC6Q03468 1493 aa13.16□□□□□ -0.3
YBX3-206ENST00000536823 RSF1Q96T23 1441 aaPredicted RBP13.14□□□□□ -0.31
YBX3-206ENST00000536823 ANKRD13DQ6ZTN6 518 aa13.14□□□□□ -0.31
YBX3-206ENST00000536823 IFNLR1Q8IU57 520 aaPredicted RBP13.13□□□□□ -0.31
YBX3-206ENST00000536823 LAMC3Q9Y6N6 1575 aa13.12□□□□□ -0.31
YBX3-206ENST00000536823 ARSIQ5FYB1 569 aa13.09□□□□□ -0.31
YBX3-206ENST00000536823 CUX2O14529 1486 aa13.09□□□□□ -0.31
YBX3-206ENST00000536823 TOP2AP11388 1531 aaKnown RBP13.07□□□□□ -0.32
YBX3-206ENST00000536823 ZNF316A6NFI3 1004 aaPredicted RBP13.06□□□□□ -0.32
YBX3-206ENST00000536823 LSM11P83369 360 aaKnown RBP eCLIP13.05□□□□□ -0.32
YBX3-206ENST00000536823 SOX12O15370 315 aa13.04□□□□□ -0.32
YBX3-206ENST00000536823 TRIM41Q8WV44 630 aa13.04□□□□□ -0.32
YBX3-206ENST00000536823 CADPSQ9ULU8 1353 aa13.04□□□□□ -0.32
YBX3-206ENST00000536823 MS4A4AQ96JQ5 239 aa13.03□□□□□ -0.32
YBX3-206ENST00000536823 PDS5BQ9NTI5 1447 aa13.03□□□□□ -0.32
YBX3-206ENST00000536823 KHSRPQ92945 711 aaKnown RBP eCLIP13.02□□□□□ -0.33
YBX3-206ENST00000536823 THOC2Q8NI27 1593 aaKnown RBP13.02□□□□□ -0.33
YBX3-206ENST00000536823 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
YBX3-206ENST00000536823 PHF8Q9UPP1 1060 aa12.99□□□□□ -0.33
YBX3-206ENST00000536823 PLA2G2EQ9NZK7 142 aa12.96□□□□□ -0.33
YBX3-206ENST00000536823 CFTRP13569 1480 aa12.94□□□□□ -0.34
YBX3-206ENST00000536823 PBX2P40425 430 aa12.93□□□□□ -0.34
YBX3-206ENST00000536823 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.92□□□□□ -0.34
YBX3-206ENST00000536823 ZFP91Q96JP5 570 aaPredicted RBP12.92□□□□□ -0.34
YBX3-206ENST00000536823 MRC2Q9UBG0 1479 aa12.91□□□□□ -0.34
YBX3-206ENST00000536823 RIOK3O14730 519 aaKnown RBP12.91□□□□□ -0.34
YBX3-206ENST00000536823 CEP164Q9UPV0 1460 aa12.91□□□□□ -0.34
YBX3-206ENST00000536823 FANCD2Q9BXW9 1451 aa12.9□□□□□ -0.34
YBX3-206ENST00000536823 CCDC88BA6NC98 1476 aa12.89□□□□□ -0.35
YBX3-206ENST00000536823 NUDT7P0C024 238 aa12.88□□□□□ -0.35
YBX3-206ENST00000536823 HCSTQ9UBK5 93 aa12.88□□□□□ -0.35
YBX3-206ENST00000536823 WDR62O43379 1518 aa12.88□□□□□ -0.35
YBX3-206ENST00000536823 AXIN2Q9Y2T1 843 aa12.87□□□□□ -0.35
YBX3-206ENST00000536823 VGFO15240 615 aaPredicted RBP12.86□□□□□ -0.35
YBX3-206ENST00000536823 RNF25Q96BH1 459 aaPredicted RBP12.86□□□□□ -0.35
YBX3-206ENST00000536823 PRDM2Q13029 1718 aa12.85□□□□□ -0.35
YBX3-206ENST00000536823 POTEEQ6S8J3 1075 aa12.85□□□□□ -0.35
YBX3-206ENST00000536823 NLRP6P59044 892 aa12.84□□□□□ -0.35
YBX3-206ENST00000536823 LHX6Q9UPM6 363 aa12.84□□□□□ -0.35
YBX3-206ENST00000536823 C2orf72A6NCS6 295 aa12.79□□□□□ -0.36
YBX3-206ENST00000536823 KIF3CO14782 793 aa12.79□□□□□ -0.36
YBX3-206ENST00000536823 DNAJC5Q9H3Z4 198 aa12.79□□□□□ -0.36
YBX3-206ENST00000536823 URB2Q14146 1524 aaKnown RBP12.78□□□□□ -0.36
YBX3-206ENST00000536823 FBXO22Q8NEZ5 403 aa12.78□□□□□ -0.36
YBX3-206ENST00000536823 ADGRD1Q6QNK2 874 aa12.77□□□□□ -0.37
YBX3-206ENST00000536823 PCDHGA4Q9Y5G9 962 aa12.77□□□□□ -0.37
YBX3-206ENST00000536823 ARHGAP33O14559 1287 aa12.73□□□□□ -0.37
YBX3-206ENST00000536823 SLC34A2O95436 690 aa12.73□□□□□ -0.37
YBX3-206ENST00000536823 BCL11BQ9C0K0 894 aaPredicted RBP12.71□□□□□ -0.37
YBX3-206ENST00000536823 MFRPQ9BY79 579 aa12.69□□□□□ -0.38
YBX3-206ENST00000536823 TOPBP1Q92547 1522 aa12.68□□□□□ -0.38
YBX3-206ENST00000536823 PSDA5PKW4 1024 aaPredicted RBP12.67□□□□□ -0.38
YBX3-206ENST00000536823 STK24Q9Y6E0 443 aa12.67□□□□□ -0.38
YBX3-206ENST00000536823 DNMBPQ6XZF7 1577 aa12.67□□□□□ -0.38
YBX3-206ENST00000536823 ABCC8Q09428 1581 aa12.66□□□□□ -0.38
YBX3-206ENST00000536823 TK2O00142 265 aa12.65□□□□□ -0.38
YBX3-206ENST00000536823 SUPT5HO00267 1087 aaKnown RBP12.65□□□□□ -0.38
YBX3-206ENST00000536823 TMC2Q8TDI7 906 aa12.65□□□□□ -0.38
YBX3-206ENST00000536823 TAOK2Q9UL54 1235 aa12.65□□□□□ -0.38
YBX3-206ENST00000536823 HRO43593 1189 aa12.64□□□□□ -0.39
YBX3-206ENST00000536823 IFT140Q96RY7 1462 aa12.64□□□□□ -0.39
YBX3-206ENST00000536823 KCTD12Q96CX2 325 aaKnown RBP12.63□□□□□ -0.39
YBX3-206ENST00000536823 DMRTA1Q5VZB9 504 aa12.62□□□□□ -0.39
YBX3-206ENST00000536823 PSEN2P49810 448 aa12.6□□□□□ -0.39
YBX3-206ENST00000536823 ZNF608Q9ULD9 1512 aaPredicted RBP12.58□□□□□ -0.4
YBX3-206ENST00000536823 STAC3Q96MF2 364 aa12.58□□□□□ -0.4
YBX3-206ENST00000536823 POLA1P09884 1462 aaPredicted RBP12.57□□□□□ -0.4
YBX3-206ENST00000536823 STK25O00506 426 aa12.56□□□□□ -0.4
YBX3-206ENST00000536823 TARBP1Q13395 1621 aaKnown RBP12.55□□□□□ -0.4
YBX3-206ENST00000536823 CUX1P39880 1505 aa12.55□□□□□ -0.4
YBX3-206ENST00000536823 EIF4G3O43432 1585 aaKnown RBP12.55□□□□□ -0.4
YBX3-206ENST00000536823 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
YBX3-206ENST00000536823 PPP4R3BQ5MIZ7 849 aa12.52□□□□□ -0.41
YBX3-206ENST00000536823 FGD5Q6ZNL6 1462 aa12.52□□□□□ -0.41
YBX3-206ENST00000536823 PTCD2Q8WV60 388 aaKnown RBP12.51□□□□□ -0.41
YBX3-206ENST00000536823 IRX2Q9BZI1 471 aaPredicted RBP12.5□□□□□ -0.41
YBX3-206ENST00000536823 RAD54L2Q9Y4B4 1467 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms