RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 PHF8Q9UPP1 1060 aa9.48□□□□□ -0.89
SKA3-207ENST00000536239 GPR153Q6NV75 609 aa9.46□□□□□ -0.9
SKA3-207ENST00000536239 ZNF687Q8N1G0 1237 aa9.44□□□□□ -0.9
SKA3-207ENST00000536239 NLRP6P59044 892 aa9.4□□□□□ -0.9
SKA3-207ENST00000536239 RNF166Q96A37 237 aaPredicted RBP9.4□□□□□ -0.9
SKA3-207ENST00000536239 ARSIQ5FYB1 569 aa9.39□□□□□ -0.91
SKA3-207ENST00000536239 FBXO22Q8NEZ5 403 aa9.38□□□□□ -0.91
SKA3-207ENST00000536239 MYT1LQ9UL68 1186 aa9.38□□□□□ -0.91
SKA3-207ENST00000536239 BCL11BQ9C0K0 894 aaPredicted RBP9.37□□□□□ -0.91
SKA3-207ENST00000536239 TAOK2Q9UL54 1235 aa9.37□□□□□ -0.91
SKA3-207ENST00000536239 KHSRPQ92945 711 aaKnown RBP eCLIP9.34□□□□□ -0.91
SKA3-207ENST00000536239 STK24Q9Y6E0 443 aa9.34□□□□□ -0.91
SKA3-207ENST00000536239 MFRPQ9BY79 579 aa9.33□□□□□ -0.92
SKA3-207ENST00000536239 ZNF316A6NFI3 1004 aaPredicted RBP9.32□□□□□ -0.92
SKA3-207ENST00000536239 PTGER2P43116 358 aa9.31□□□□□ -0.92
SKA3-207ENST00000536239 KIF3CO14782 793 aa9.3□□□□□ -0.92
SKA3-207ENST00000536239 STK25O00506 426 aa9.29□□□□□ -0.92
SKA3-207ENST00000536239 ANKRD13DQ6ZTN6 518 aa9.29□□□□□ -0.92
SKA3-207ENST00000536239 C2orf72A6NCS6 295 aa9.28□□□□□ -0.92
SKA3-207ENST00000536239 ECM2O94769 699 aaPredicted RBP9.25□□□□□ -0.93
SKA3-207ENST00000536239 LSM11P83369 360 aaKnown RBP eCLIP9.25□□□□□ -0.93
SKA3-207ENST00000536239 NUDT7P0C024 238 aa9.24□□□□□ -0.93
SKA3-207ENST00000536239 SLC34A2O95436 690 aa9.23□□□□□ -0.93
SKA3-207ENST00000536239 PCDHGA4Q9Y5G9 962 aa9.22□□□□□ -0.93
SKA3-207ENST00000536239 PBX2P40425 430 aa9.21□□□□□ -0.94
SKA3-207ENST00000536239 LHX6Q9UPM6 363 aa9.21□□□□□ -0.94
SKA3-207ENST00000536239 TMC2Q8TDI7 906 aa9.2□□□□□ -0.94
SKA3-207ENST00000536239 POTEEQ6S8J3 1075 aa9.19□□□□□ -0.94
SKA3-207ENST00000536239 RGL2O15211 777 aa9.18□□□□□ -0.94
SKA3-207ENST00000536239 PKD2Q13563 968 aa9.18□□□□□ -0.94
SKA3-207ENST00000536239 AXIN2Q9Y2T1 843 aa9.17□□□□□ -0.94
SKA3-207ENST00000536239 PPP1R37O75864 691 aa9.15□□□□□ -0.94
SKA3-207ENST00000536239 PSDA5PKW4 1024 aaPredicted RBP9.11□□□□□ -0.95
SKA3-207ENST00000536239 ARHGAP33O14559 1287 aa9.11□□□□□ -0.95
SKA3-207ENST00000536239 KDM4FA0A1W2PPD8 638 aa9.1□□□□□ -0.95
SKA3-207ENST00000536239 ADGRD1Q6QNK2 874 aa9.09□□□□□ -0.95
SKA3-207ENST00000536239 PTCD2Q8WV60 388 aaKnown RBP9.09□□□□□ -0.95
SKA3-207ENST00000536239 HCSTQ9UBK5 93 aa9.08□□□□□ -0.96
SKA3-207ENST00000536239 FOXK1P85037 733 aa9.07□□□□□ -0.96
SKA3-207ENST00000536239 TK2O00142 265 aa9.05□□□□□ -0.96
SKA3-207ENST00000536239 PLPP6Q8IY26 295 aa9.05□□□□□ -0.96
SKA3-207ENST00000536239 PLA2G2EQ9NZK7 142 aa9.05□□□□□ -0.96
SKA3-207ENST00000536239 GPHNQ9NQX3 736 aaPredicted RBP9.04□□□□□ -0.96
SKA3-207ENST00000536239 HRO43593 1189 aa9.03□□□□□ -0.96
SKA3-207ENST00000536239 PSEN2P49810 448 aa9.03□□□□□ -0.96
SKA3-207ENST00000536239 DMRTA1Q5VZB9 504 aa9.03□□□□□ -0.96
SKA3-207ENST00000536239 TBC1D12O60347 775 aa9.01□□□□□ -0.97
SKA3-207ENST00000536239 DSG2Q14126 1118 aa9.01□□□□□ -0.97
SKA3-207ENST00000536239 PPP4R3BQ5MIZ7 849 aa9.01□□□□□ -0.97
SKA3-207ENST00000536239 HS6ST3Q8IZP7 471 aa8.99□□□□□ -0.97
SKA3-207ENST00000536239 KCTD12Q96CX2 325 aaKnown RBP8.95□□□□□ -0.98
SKA3-207ENST00000536239 STAC3Q96MF2 364 aa8.95□□□□□ -0.98
SKA3-207ENST00000536239 KCNH8Q96L42 1107 aa8.94□□□□□ -0.98
SKA3-207ENST00000536239 KCNK17Q96T54 332 aa8.94□□□□□ -0.98
SKA3-207ENST00000536239 CHGAP10645 457 aaKnown RBP8.92□□□□□ -0.98
SKA3-207ENST00000536239 OXER1Q8TDS5 423 aa8.92□□□□□ -0.98
SKA3-207ENST00000536239 VPS9D1Q9Y2B5 631 aa8.91□□□□□ -0.98
SKA3-207ENST00000536239 UPF1Q92900 1129 aaKnown RBP eCLIP8.9□□□□□ -0.98
SKA3-207ENST00000536239 ZNF454Q8N9F8 522 aa8.89□□□□□ -0.99
SKA3-207ENST00000536239 DNAJC5Q9H3Z4 198 aa8.89□□□□□ -0.99
SKA3-207ENST00000536239 NKX1-1Q15270 411 aaPredicted RBP8.88□□□□□ -0.99
SKA3-207ENST00000536239 CRISPLD2Q9H0B8 497 aa8.88□□□□□ -0.99
SKA3-207ENST00000536239 BCL2L12Q9HB09 334 aa8.88□□□□□ -0.99
SKA3-207ENST00000536239 SLC4A5Q9BY07 1137 aa8.87□□□□□ -0.99
SKA3-207ENST00000536239 PTPN5P54829 565 aa8.86□□□□□ -0.99
SKA3-207ENST00000536239 RYDENQ9NUL5 291 aaKnown RBP8.86□□□□□ -0.99
SKA3-207ENST00000536239 PPP1R15BQ5SWA1 713 aa8.85□□□□□ -0.99
SKA3-207ENST00000536239 BHMG1C9JSJ3 638 aaPredicted RBP8.84□□□□□ -0.99
SKA3-207ENST00000536239 FOSBP53539 338 aa8.84□□□□□ -0.99
SKA3-207ENST00000536239 PTPREP23469 700 aa8.83□□□□□ -1
SKA3-207ENST00000536239 ANO8Q9HCE9 1232 aaPredicted RBP8.83□□□□□ -1
SKA3-207ENST00000536239 PDE4AP27815 886 aa8.82□□□□□ -1
SKA3-207ENST00000536239 NCKAP5LQ9HCH0 1330 aa8.81□□□□□ -1
SKA3-207ENST00000536239 ZBED2Q9BTP6 218 aa8.81□□□□□ -1
SKA3-207ENST00000536239 IFFO2Q5TF58 517 aa8.8□□□□□ -1
SKA3-207ENST00000536239 THSD4Q6ZMP0 1018 aa8.8□□□□□ -1
SKA3-207ENST00000536239 EVI5O60447 810 aa8.79□□□□□ -1
SKA3-207ENST00000536239 JPH4Q96JJ6 628 aa8.79□□□□□ -1
SKA3-207ENST00000536239 GOLGA8CPA6NN73 597 aa8.78□□□□□ -1
SKA3-207ENST00000536239 MRPL50Q8N5N7 158 aaKnown RBP8.78□□□□□ -1
SKA3-207ENST00000536239 WNT2BQ93097 391 aa8.78□□□□□ -1
SKA3-207ENST00000536239 ZDHHC16Q969W1 377 aa8.78□□□□□ -1
SKA3-207ENST00000536239 RGS20O76081 388 aa8.77□□□□□ -1.01
SKA3-207ENST00000536239 ADAM33Q9BZ11 813 aa8.77□□□□□ -1.01
SKA3-207ENST00000536239 LARP6Q9BRS8 491 aaKnown RBP8.75□□□□□ -1.01
SKA3-207ENST00000536239 MAP3K9P80192 1104 aa8.74□□□□□ -1.01
SKA3-207ENST00000536239 DDX27Q96GQ7 796 aaKnown RBP8.74□□□□□ -1.01
SKA3-207ENST00000536239 NBPF3Q9H094 633 aa8.74□□□□□ -1.01
SKA3-207ENST00000536239 GTPBP6O43824 516 aaPredicted RBP8.73□□□□□ -1.01
SKA3-207ENST00000536239 A0A0G2JS52 829 aa8.72□□□□□ -1.01
SKA3-207ENST00000536239 MFSD10Q14728 455 aa8.71□□□□□ -1.02
SKA3-207ENST00000536239 PPP1R3GB7ZBB8 358 aa8.7□□□□□ -1.02
SKA3-207ENST00000536239 IRX2Q9BZI1 471 aaPredicted RBP8.69□□□□□ -1.02
SKA3-207ENST00000536239 EMILIN3Q9NT22 766 aa8.69□□□□□ -1.02
SKA3-207ENST00000536239 RABGEF1Q9UJ41 708 aa8.69□□□□□ -1.02
SKA3-207ENST00000536239 PCDHGA10Q9Y5H3 936 aa8.69□□□□□ -1.02
SKA3-207ENST00000536239 PROX2Q3B8N5 592 aa8.67□□□□□ -1.02
SKA3-207ENST00000536239 COL9A1P20849 921 aa8.66□□□□□ -1.02
SKA3-207ENST00000536239 ANKK1Q8NFD2 765 aa8.65□□□□□ -1.02
SKA3-207ENST00000536239 FBXW7Q969H0 707 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms